Wall clock time and date at job start Mon Mar 30 2020 02:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47011 * 2 1 4 4 H 1.08998 * 109.47750 * 304.99930 * 3 2 1 5 5 C 1.53006 * 109.47070 * 64.99935 * 3 2 1 6 6 C 1.53000 * 109.47070 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46880 * 299.99673 * 6 5 3 8 8 C 1.52995 * 109.47273 * 60.00468 * 7 6 5 9 9 H 1.09003 * 109.47414 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47200 * 59.99636 * 8 7 6 11 11 O 1.20754 * 120.00105 * 345.92560 * 10 8 7 12 12 C 1.50710 * 120.00057 * 165.92868 * 10 8 7 13 13 C 1.50696 * 109.46965 * 179.97438 * 12 10 8 14 14 H 1.07995 * 120.00376 * 0.02562 * 13 12 10 15 15 C 1.37884 * 119.99843 * 179.97438 * 13 12 10 16 16 N 1.31513 * 119.99911 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99842 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46996 * 269.99958 * 17 15 13 19 19 H 1.48494 * 109.47378 * 30.00172 * 17 15 13 20 20 H 1.48505 * 109.46673 * 150.00120 * 17 15 13 21 21 C 1.53004 * 109.47104 * 299.99458 * 8 7 6 22 22 H 1.08993 * 109.47586 * 299.99976 * 1 2 3 23 23 H 1.09000 * 109.47125 * 60.00259 * 1 2 3 24 24 H 1.09000 * 109.46874 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47586 * 240.00024 * 2 1 3 26 26 H 1.09000 * 109.47125 * 119.99741 * 2 1 3 27 27 H 1.09001 * 109.47403 * 59.99914 * 5 3 2 28 28 H 1.09003 * 109.47144 * 299.99890 * 5 3 2 29 29 H 1.09006 * 109.46851 * 180.02562 * 6 5 3 30 30 H 1.09001 * 109.47078 * 59.99715 * 6 5 3 31 31 H 1.08992 * 109.47451 * 299.99800 * 7 6 5 32 32 H 1.09002 * 109.46940 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.47008 * 59.99724 * 12 10 8 34 34 H 1.08999 * 109.46866 * 300.00104 * 12 10 8 35 35 H 0.97005 * 119.99665 * 359.97438 * 16 15 13 36 36 H 1.08996 * 109.47116 * 179.97438 * 21 8 7 37 37 H 1.08992 * 109.46864 * 300.00205 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 2.1446 3.5693 1.3071 7 6 3.6694 3.5716 1.1812 8 6 4.0742 2.8877 -0.1261 9 1 5.1605 2.8897 -0.2161 10 6 3.4728 3.6326 -1.2900 11 8 2.5970 4.4421 -1.1011 12 6 3.9645 3.3670 -2.6897 13 6 3.2056 4.2335 -3.6614 14 1 2.4439 4.9092 -3.3015 15 6 3.4845 4.1644 -5.0099 16 7 4.4125 3.3420 -5.4482 17 14 2.5444 5.2391 -6.2144 18 1 1.3334 4.5171 -6.6809 19 1 2.1407 6.5000 -5.5420 20 1 3.4118 5.5542 -7.3778 21 6 3.5648 1.4449 -0.1259 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0697 1.5876 2.1493 28 1 0.5488 2.1252 1.3969 29 1 1.8565 4.0564 2.2388 30 1 1.7096 4.1080 0.4653 31 1 4.1043 3.0329 2.0230 32 1 4.0323 4.5995 1.1805 33 1 3.8049 2.3177 -2.9378 34 1 5.0281 3.5972 -2.7509 35 1 4.9009 2.7842 -4.8226 36 1 3.8529 0.9578 -1.0574 37 1 3.9998 0.9062 0.7159 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394507739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:08 Heat of formation + Delta-G solvation = -80.896528 kcal Electronic energy + Delta-G solvation = -16184.323625 eV Core-core repulsion = 13731.983871 eV Total energy + Delta-G solvation = -2452.339754 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.92012 -37.01812 -33.60938 -33.27028 -31.10787 -28.84684 -28.36710 -24.30659 -23.29456 -22.39792 -20.89317 -20.05175 -18.02935 -16.70035 -15.51671 -15.20345 -14.64567 -14.17925 -13.97498 -13.69471 -13.46898 -13.02856 -12.80849 -12.49767 -12.19812 -11.85114 -11.57695 -11.43392 -11.25026 -11.16157 -10.87186 -10.69607 -10.63316 -10.49340 -10.25224 -10.06991 -9.76608 -9.68256 -8.77075 -8.37142 -8.05680 -6.37677 -4.06669 2.99074 3.46119 3.50001 3.66898 4.53622 4.74164 4.87972 4.95501 5.10978 5.26770 5.37503 5.39857 5.49313 5.58101 5.67162 5.69979 5.81176 5.85582 5.88881 5.99975 6.06577 6.14432 6.17416 6.21711 6.32054 6.44028 6.50502 6.54826 6.61768 6.63947 6.92423 7.00204 7.11092 8.04473 8.52484 8.70005 8.87836 9.63960 11.02667 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.029017 B = 0.007820 C = 0.007201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.736258 B = 3579.546243 C = 3887.649379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.095 4.095 4 H 0.076 0.924 5 C -0.107 4.107 6 C -0.144 4.144 7 C -0.099 4.099 8 C -0.146 4.146 9 H 0.089 0.911 10 C 0.370 3.630 11 O -0.453 6.453 12 C -0.041 4.041 13 C -0.595 4.595 14 H 0.066 0.934 15 C 0.015 3.985 16 N -0.915 5.915 17 Si 1.073 2.927 18 H -0.288 1.288 19 H -0.287 1.287 20 H -0.284 1.284 21 C -0.096 4.096 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.104 0.896 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.267 0.733 36 H 0.069 0.931 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.921 -5.471 12.691 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.113 4.113 4 H 0.094 0.906 5 C -0.145 4.145 6 C -0.181 4.181 7 C -0.137 4.137 8 C -0.165 4.165 9 H 0.107 0.893 10 C 0.246 3.754 11 O -0.327 6.327 12 C -0.077 4.077 13 C -0.633 4.633 14 H 0.084 0.916 15 C -0.188 4.188 16 N -0.552 5.552 17 Si 0.901 3.099 18 H -0.214 1.214 19 H -0.213 1.213 20 H -0.210 1.210 21 C -0.134 4.134 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.539 -4.654 11.190 12.625 hybrid contribution 0.412 -0.557 1.667 1.805 sum -3.127 -5.211 12.856 14.220 Atomic orbital electron populations 1.21812 0.96110 1.01056 1.02064 1.21537 0.95834 0.96503 1.01585 1.21257 0.95394 0.95762 0.98900 0.90608 1.21562 1.00136 0.96095 0.96693 1.21985 0.95845 0.96954 1.03298 1.21345 0.96778 0.99922 0.95655 1.21857 1.01502 0.96906 0.96238 0.89319 1.24839 0.79888 0.78490 0.92222 1.90083 1.26152 1.29537 1.86889 1.19715 0.98131 0.98965 0.90923 1.22025 1.22999 1.25164 0.93120 0.91609 1.25873 0.97038 0.98255 0.97683 1.70792 1.22404 1.23445 1.38538 0.83478 0.75546 0.75551 0.75289 1.21425 1.21346 1.21017 1.21434 0.95431 0.94347 1.02180 0.92675 0.92560 0.93199 0.91995 0.92404 0.92918 0.92310 0.93229 0.87787 0.92596 0.92290 0.94107 0.94339 0.92323 0.91251 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.67 37.16 0.36 -1.46 16 2 C -0.12 -1.49 5.40 -26.73 -0.14 -1.63 16 3 C -0.09 -1.42 1.97 -90.61 -0.18 -1.59 16 4 H 0.08 1.39 7.18 -51.93 -0.37 1.02 16 5 C -0.11 -1.49 4.96 -26.73 -0.13 -1.62 16 6 C -0.14 -2.23 5.63 -26.73 -0.15 -2.38 16 7 C -0.10 -1.51 5.21 -26.73 -0.14 -1.65 16 8 C -0.15 -2.43 2.94 -91.77 -0.27 -2.70 16 9 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 10 C 0.37 8.03 5.03 -29.03 -0.15 7.89 16 11 O -0.45 -10.87 12.33 6.00 0.07 -10.79 16 12 C -0.04 -1.02 4.68 -29.03 -0.14 -1.16 16 13 C -0.59 -17.35 8.92 -34.44 -0.31 -17.66 16 14 H 0.07 1.99 6.76 -52.49 -0.35 1.64 16 15 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 16 N -0.92 -27.77 13.65 55.43 0.76 -27.02 16 17 Si 1.07 26.03 29.90 -169.99 -5.08 20.95 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.10 -1.43 4.70 -26.73 -0.13 -1.55 16 22 H 0.05 0.62 6.56 -51.93 -0.34 0.28 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.10 1.96 5.06 -51.93 -0.26 1.70 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.04 1.03 7.71 -51.93 -0.40 0.63 16 34 H 0.04 0.98 8.01 -51.93 -0.42 0.57 16 35 H 0.27 7.92 7.22 -40.82 -0.29 7.63 16 36 H 0.07 1.06 7.84 -51.93 -0.41 0.66 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 286.13 15.07 4.31 4.31 Total: -1.00 -30.96 286.13 -7.62 -38.59 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.21 Total: -0.84 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: -1.47 Total: -25.19 kcal Atomic # 7 Polarization: -27.77 SS G_CDS: 0.76 Total: -27.02 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.07 Total: -10.79 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.08 Total: 20.95 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.96 -7.62 -38.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394507739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.311 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds