Wall clock time and date at job start Mon Mar 30 2020 02:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47011 * 2 1 4 4 H 1.08998 * 109.47750 * 304.99930 * 3 2 1 5 5 C 1.53006 * 109.47070 * 64.99935 * 3 2 1 6 6 C 1.53000 * 109.47070 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46880 * 299.99673 * 6 5 3 8 8 C 1.52995 * 109.47273 * 60.00468 * 7 6 5 9 9 H 1.09003 * 109.47414 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47200 * 59.99636 * 8 7 6 11 11 O 1.20754 * 120.00105 * 345.92560 * 10 8 7 12 12 C 1.50710 * 120.00057 * 165.92868 * 10 8 7 13 13 C 1.50696 * 109.46965 * 179.97438 * 12 10 8 14 14 H 1.07995 * 120.00376 * 0.02562 * 13 12 10 15 15 C 1.37884 * 119.99843 * 179.97438 * 13 12 10 16 16 N 1.31513 * 119.99911 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99842 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46996 * 269.99958 * 17 15 13 19 19 H 1.48494 * 109.47378 * 30.00172 * 17 15 13 20 20 H 1.48505 * 109.46673 * 150.00120 * 17 15 13 21 21 C 1.53004 * 109.47104 * 299.99458 * 8 7 6 22 22 H 1.08993 * 109.47586 * 299.99976 * 1 2 3 23 23 H 1.09000 * 109.47125 * 60.00259 * 1 2 3 24 24 H 1.09000 * 109.46874 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47586 * 240.00024 * 2 1 3 26 26 H 1.09000 * 109.47125 * 119.99741 * 2 1 3 27 27 H 1.09001 * 109.47403 * 59.99914 * 5 3 2 28 28 H 1.09003 * 109.47144 * 299.99890 * 5 3 2 29 29 H 1.09006 * 109.46851 * 180.02562 * 6 5 3 30 30 H 1.09001 * 109.47078 * 59.99715 * 6 5 3 31 31 H 1.08992 * 109.47451 * 299.99800 * 7 6 5 32 32 H 1.09002 * 109.46940 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.47008 * 59.99724 * 12 10 8 34 34 H 1.08999 * 109.46866 * 300.00104 * 12 10 8 35 35 H 0.97005 * 119.99665 * 359.97438 * 16 15 13 36 36 H 1.08996 * 109.47116 * 179.97438 * 21 8 7 37 37 H 1.08992 * 109.46864 * 300.00205 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 2.1446 3.5693 1.3071 7 6 3.6694 3.5716 1.1812 8 6 4.0742 2.8877 -0.1261 9 1 5.1605 2.8897 -0.2161 10 6 3.4728 3.6326 -1.2900 11 8 2.5970 4.4421 -1.1011 12 6 3.9645 3.3670 -2.6897 13 6 3.2056 4.2335 -3.6614 14 1 2.4439 4.9092 -3.3015 15 6 3.4845 4.1644 -5.0099 16 7 4.4125 3.3420 -5.4482 17 14 2.5444 5.2391 -6.2144 18 1 1.3334 4.5171 -6.6809 19 1 2.1407 6.5000 -5.5420 20 1 3.4118 5.5542 -7.3778 21 6 3.5648 1.4449 -0.1259 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0697 1.5876 2.1493 28 1 0.5488 2.1252 1.3969 29 1 1.8565 4.0564 2.2388 30 1 1.7096 4.1080 0.4653 31 1 4.1043 3.0329 2.0230 32 1 4.0323 4.5995 1.1805 33 1 3.8049 2.3177 -2.9378 34 1 5.0281 3.5972 -2.7509 35 1 4.9009 2.7842 -4.8226 36 1 3.8529 0.9578 -1.0574 37 1 3.9998 0.9062 0.7159 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394507739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:08 Heat of formation + Delta-G solvation = -97.814826 kcal Electronic energy + Delta-G solvation = -16185.057258 eV Core-core repulsion = 13731.983871 eV Total energy + Delta-G solvation = -2453.073386 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.40786 -38.49107 -35.52817 -34.72670 -32.50778 -30.31553 -29.93448 -26.12925 -24.63905 -23.81725 -22.27768 -21.24269 -19.64809 -18.87735 -16.96393 -16.61461 -16.02516 -15.78455 -15.52909 -15.39689 -14.86748 -14.35648 -14.14695 -14.06055 -13.48483 -13.37555 -13.02885 -12.91699 -12.89231 -12.52788 -12.43668 -12.26416 -11.98229 -11.92320 -11.73339 -11.48947 -10.95719 -10.88895 -10.84111 -10.61557 -9.78615 -8.73926 -6.43310 1.24904 1.47645 1.56306 1.76280 2.50579 3.10156 3.28594 3.70310 3.77714 3.88602 4.11057 4.26346 4.39390 4.44640 4.49736 4.56412 4.60565 4.74586 4.76015 4.76460 4.89004 4.93184 5.00342 5.02035 5.07927 5.12232 5.14126 5.28206 5.31601 5.34838 5.47320 5.53325 5.69829 5.86912 6.15909 6.54752 6.93294 7.34747 8.68270 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.029017 B = 0.007820 C = 0.007201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.736258 B = 3579.546243 C = 3887.649379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.096 4.096 4 H 0.027 0.973 5 C -0.101 4.101 6 C -0.146 4.146 7 C -0.096 4.096 8 C -0.137 4.137 9 H 0.106 0.894 10 C 0.370 3.630 11 O -0.480 6.480 12 C -0.046 4.046 13 C -0.617 4.617 14 H 0.046 0.954 15 C -0.031 4.031 16 N -0.932 5.932 17 Si 1.116 2.884 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.274 1.274 21 C -0.094 4.094 22 H 0.063 0.937 23 H 0.033 0.967 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.036 0.964 34 H 0.033 0.967 35 H 0.259 0.741 36 H 0.057 0.943 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.842 -6.497 14.552 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.114 4.114 4 H 0.046 0.954 5 C -0.138 4.138 6 C -0.183 4.183 7 C -0.134 4.134 8 C -0.156 4.156 9 H 0.125 0.875 10 C 0.248 3.752 11 O -0.356 6.356 12 C -0.083 4.083 13 C -0.655 4.655 14 H 0.064 0.936 15 C -0.229 4.229 16 N -0.569 5.569 17 Si 0.937 3.063 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.199 1.199 21 C -0.132 4.132 22 H 0.082 0.918 23 H 0.052 0.948 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.450 -5.697 13.066 14.665 hybrid contribution 0.383 -0.235 1.090 1.179 sum -3.067 -5.932 14.156 15.652 Atomic orbital electron populations 1.21814 0.95761 1.02025 1.01425 1.21520 0.96172 0.94905 1.02479 1.21238 0.95422 0.96886 0.97902 0.95421 1.21533 1.00557 0.94978 0.96773 1.21927 0.96098 0.97912 1.02390 1.21374 0.96585 0.99723 0.95693 1.21825 1.02051 0.97376 0.94333 0.87549 1.25036 0.79351 0.78422 0.92424 1.90102 1.27319 1.30940 1.87239 1.19704 0.97416 0.97872 0.93331 1.22316 1.23109 1.25595 0.94477 0.93602 1.27285 0.97164 0.98750 0.99744 1.70899 1.23310 1.24296 1.38427 0.82943 0.75121 0.74502 0.73717 1.19706 1.20438 1.19925 1.21491 0.95385 0.93010 1.03265 0.91811 0.94755 0.91405 0.92781 0.89717 0.89908 0.92022 0.91416 0.91912 0.88793 0.93332 0.94665 0.94876 0.93117 0.92417 0.87796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.67 71.98 0.70 -2.72 16 2 C -0.11 -2.64 5.40 30.59 0.17 -2.47 16 3 C -0.10 -2.75 1.97 -10.79 -0.02 -2.77 16 4 H 0.03 1.05 7.18 -2.39 -0.02 1.03 16 5 C -0.10 -2.53 4.96 30.60 0.15 -2.38 16 6 C -0.15 -4.30 5.63 30.59 0.17 -4.13 16 7 C -0.10 -2.68 5.21 30.59 0.16 -2.53 16 8 C -0.14 -4.36 2.94 -11.54 -0.03 -4.39 16 9 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 10 C 0.37 16.49 5.03 29.10 0.15 16.63 16 11 O -0.48 -24.01 12.33 -1.43 -0.02 -24.03 16 12 C -0.05 -2.42 4.68 29.10 0.14 -2.28 16 13 C -0.62 -37.28 8.92 25.60 0.23 -37.05 16 14 H 0.05 2.90 6.76 -2.91 -0.02 2.88 16 15 C -0.03 -1.87 5.46 84.66 0.46 -1.41 16 16 N -0.93 -57.50 13.65 21.45 0.29 -57.20 16 17 Si 1.12 52.78 29.90 68.60 2.05 54.83 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 C -0.09 -2.58 4.70 30.60 0.14 -2.44 16 22 H 0.06 1.30 6.56 -2.39 -0.02 1.28 16 23 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 1.50 6.57 -2.39 -0.02 1.49 16 29 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.06 2.41 5.06 -2.39 -0.01 2.40 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 1.87 7.71 -2.39 -0.02 1.85 16 34 H 0.03 1.75 8.01 -2.39 -0.02 1.74 16 35 H 0.26 15.83 7.22 -92.70 -0.67 15.16 16 36 H 0.06 1.71 7.84 -2.39 -0.02 1.69 16 37 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -69.06 286.13 5.85 -63.21 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.12 Total: 11.13 kcal Atomic # 6 Polarization: -50.35 SS G_CDS: 2.41 Total: -47.94 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.29 Total: -57.20 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.02 Total: -24.03 kcal Atomic # 14 Polarization: 52.78 SS G_CDS: 2.05 Total: 54.83 kcal Total: -69.06 5.85 -63.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394507739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.604 kcal (2) G-P(sol) polarization free energy of solvation -69.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds