Wall clock time and date at job start Mon Mar 30 2020 02:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47175 * 2 1 4 4 H 1.08992 * 109.47136 * 55.00307 * 3 2 1 5 5 C 1.53001 * 109.47000 * 294.99998 * 3 2 1 6 6 C 1.53001 * 109.47000 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46991 * 60.00108 * 6 5 3 8 8 C 1.52998 * 109.47337 * 300.00119 * 7 6 5 9 9 C 1.52998 * 109.47349 * 59.99669 * 8 7 6 10 10 H 1.08997 * 109.47704 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46990 * 60.00268 * 9 8 7 12 12 O 1.20762 * 119.99779 * 258.35500 * 11 9 8 13 13 C 1.50699 * 120.00119 * 78.35335 * 11 9 8 14 14 C 1.50696 * 109.47176 * 180.02562 * 13 11 9 15 15 H 1.07997 * 120.00388 * 359.97438 * 14 13 11 16 16 C 1.37877 * 119.99969 * 179.97438 * 14 13 11 17 17 N 1.31520 * 119.99911 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00001 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47357 * 89.99985 * 18 16 14 20 20 H 1.48506 * 109.46976 * 210.00005 * 18 16 14 21 21 H 1.48499 * 109.47074 * 329.99778 * 18 16 14 22 22 H 1.08993 * 109.47476 * 59.99581 * 1 2 3 23 23 H 1.08999 * 109.47557 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46891 * 299.99680 * 1 2 3 25 25 H 1.09000 * 109.46931 * 239.99765 * 2 1 3 26 26 H 1.09004 * 109.47071 * 120.00201 * 2 1 3 27 27 H 1.08998 * 109.47125 * 60.00331 * 5 3 2 28 28 H 1.09002 * 109.47421 * 300.00130 * 5 3 2 29 29 H 1.09002 * 109.47140 * 300.00302 * 6 5 3 30 30 H 1.09000 * 109.47283 * 179.97438 * 6 5 3 31 31 H 1.09002 * 109.47020 * 60.00120 * 7 6 5 32 32 H 1.08999 * 109.47374 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47303 * 179.97438 * 8 7 6 34 34 H 1.09002 * 109.47066 * 299.99973 * 8 7 6 35 35 H 1.09005 * 109.46733 * 299.99909 * 13 11 9 36 36 H 1.08999 * 109.47221 * 59.99733 * 13 11 9 37 37 H 0.96996 * 119.99729 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 2.1458 3.5688 -1.3076 7 6 3.6707 3.5700 -1.1822 8 6 4.0755 2.8860 0.1250 9 6 3.5649 1.4437 0.1254 10 1 3.8529 0.9565 1.0569 11 6 4.1652 0.6980 -1.0386 12 8 3.5102 0.5051 -2.0346 13 6 5.5829 0.1932 -0.9596 14 6 5.9375 -0.5115 -2.2435 15 1 5.2090 -0.5867 -3.0373 16 6 7.1920 -1.0602 -2.4050 17 7 8.0791 -0.9691 -1.4383 18 14 7.6313 -1.9344 -3.9963 19 1 8.2073 -0.9575 -4.9551 20 1 8.6273 -3.0000 -3.7171 21 1 6.4087 -2.5407 -4.5818 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 0.5490 2.1253 -1.3969 28 1 2.0698 1.5875 -2.1492 29 1 1.7116 4.1081 -0.4658 30 1 1.8579 4.0560 -2.2392 31 1 4.1049 3.0307 -2.0241 32 1 4.0345 4.5975 -1.1829 33 1 5.1618 2.8864 0.2141 34 1 3.6413 3.4253 0.9669 35 1 6.2600 1.0339 -0.8080 36 1 5.6750 -0.5024 -0.1255 37 1 8.9615 -1.3555 -1.5518 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401607217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:57 Heat of formation + Delta-G solvation = -74.391266 kcal Electronic energy + Delta-G solvation = -16295.231127 eV Core-core repulsion = 13843.173462 eV Total energy + Delta-G solvation = -2452.057665 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.01915 -36.48297 -33.71346 -32.91924 -31.10728 -28.71214 -28.66000 -24.34160 -23.51499 -22.18388 -20.49379 -20.13085 -17.81776 -16.26167 -15.52510 -15.02464 -14.61407 -14.37910 -13.85184 -13.70429 -13.10217 -13.00865 -12.83240 -12.37985 -12.10645 -11.74279 -11.65351 -11.20986 -11.18233 -10.99770 -10.80738 -10.68383 -10.65094 -10.41383 -10.25040 -9.90103 -9.67203 -9.57085 -9.24025 -8.42392 -7.93220 -6.04367 -4.04892 3.11069 3.33604 3.39279 3.45641 4.45168 4.87478 4.93687 5.06918 5.33154 5.36372 5.38867 5.44419 5.51220 5.64736 5.77775 5.82010 5.88760 5.95193 5.98626 6.10749 6.17148 6.24653 6.26938 6.40121 6.51380 6.54974 6.58934 6.65241 6.69751 6.73715 7.15038 7.28686 7.39502 7.95016 8.26099 8.81971 9.04803 9.60096 11.07635 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.031940 B = 0.007868 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.424251 B = 3557.643347 C = 3855.642841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C -0.066 4.066 4 H 0.060 0.940 5 C -0.142 4.142 6 C -0.113 4.113 7 C -0.125 4.125 8 C -0.102 4.102 9 C -0.142 4.142 10 H 0.088 0.912 11 C 0.368 3.632 12 O -0.456 6.456 13 C -0.028 4.028 14 C -0.514 4.514 15 H 0.072 0.928 16 C 0.056 3.944 17 N -0.900 5.900 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.109 0.891 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.754 6.685 4.485 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.084 4.084 4 H 0.079 0.921 5 C -0.178 4.178 6 C -0.150 4.150 7 C -0.163 4.163 8 C -0.139 4.139 9 C -0.162 4.162 10 H 0.106 0.894 11 C 0.244 3.756 12 O -0.331 6.331 13 C -0.064 4.064 14 C -0.552 4.552 15 H 0.090 0.910 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.724 3.276 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.197 1.197 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.127 0.873 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.925 6.528 4.002 13.341 hybrid contribution 0.482 -0.434 -0.512 0.826 sum -10.443 6.094 3.490 12.585 Atomic orbital electron populations 1.21766 0.96419 1.00968 1.01289 1.21681 0.95421 0.96817 1.02713 1.20967 0.93643 0.95853 0.97978 0.92118 1.22137 0.99685 0.95626 1.00378 1.21469 0.95673 0.97357 1.00530 1.21589 0.96173 1.00083 0.98445 1.21370 1.01163 0.93602 0.97790 1.21915 0.96085 0.97468 1.00683 0.89400 1.25047 0.90972 0.74088 0.85451 1.90042 1.62297 1.47884 1.32828 1.19607 0.89221 0.97944 0.99648 1.21194 0.98417 1.34829 1.00744 0.91017 1.25006 0.96389 0.96316 0.96793 1.69964 1.05603 1.46015 1.32347 0.86511 0.78204 0.79321 0.83545 1.20645 1.21266 1.19730 0.92626 0.93285 0.93432 0.90489 0.92607 0.93165 0.87299 0.93081 0.92725 0.91301 0.92433 0.91116 0.91860 0.93171 0.93312 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.67 37.16 0.36 -1.50 16 2 C -0.13 -1.96 5.03 -26.73 -0.13 -2.09 16 3 C -0.07 -0.99 1.93 -90.62 -0.18 -1.17 16 4 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 5 C -0.14 -2.17 4.67 -26.73 -0.12 -2.29 16 6 C -0.11 -1.57 5.92 -26.73 -0.16 -1.73 16 7 C -0.13 -1.89 5.70 -26.73 -0.15 -2.04 16 8 C -0.10 -1.51 5.44 -26.73 -0.15 -1.66 16 9 C -0.14 -2.36 2.47 -91.77 -0.23 -2.58 16 10 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 11 C 0.37 7.78 4.50 -29.03 -0.13 7.65 16 12 O -0.46 -10.47 10.65 6.00 0.06 -10.40 16 13 C -0.03 -0.69 5.40 -29.04 -0.16 -0.85 16 14 C -0.51 -14.68 8.92 -34.44 -0.31 -14.98 16 15 H 0.07 2.11 6.76 -52.49 -0.35 1.75 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 18 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H 0.05 0.70 6.56 -51.93 -0.34 0.36 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.08 1.39 6.34 -51.93 -0.33 1.06 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.70 6.57 -51.93 -0.34 0.36 16 28 H 0.11 2.01 4.97 -51.95 -0.26 1.76 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.23 7.06 -51.93 -0.37 0.87 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 1.29 8.08 -51.93 -0.42 0.87 16 36 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 284.06 15.07 4.28 4.28 Total: -1.00 -29.53 284.06 -7.58 -37.11 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.19 Total: -0.51 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -1.45 Total: -21.75 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.06 Total: -10.40 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.53 -7.58 -37.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401607217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.281 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds