Wall clock time and date at job start Mon Mar 30 2020 02:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47671 * 2 1 4 4 H 1.09003 * 109.46903 * 305.00389 * 3 2 1 5 5 C 1.53003 * 109.47078 * 64.99739 * 3 2 1 6 6 C 1.53001 * 109.47473 * 180.02562 * 5 3 2 7 7 C 1.53007 * 109.46425 * 300.00032 * 6 5 3 8 8 C 1.53002 * 109.47329 * 60.00270 * 7 6 5 9 9 C 1.52995 * 109.47452 * 184.99741 * 3 2 1 10 10 H 1.08998 * 109.47122 * 300.00307 * 9 3 2 11 11 C 1.50699 * 109.46945 * 60.00028 * 9 3 2 12 12 O 1.20765 * 120.00007 * 30.00338 * 11 9 3 13 13 C 1.50698 * 119.99996 * 209.99670 * 11 9 3 14 14 C 1.50706 * 109.47294 * 179.97438 * 13 11 9 15 15 H 1.07999 * 119.99515 * 0.02562 * 14 13 11 16 16 C 1.37870 * 120.00176 * 180.02562 * 14 13 11 17 17 N 1.31520 * 119.99883 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00043 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47293 * 89.99746 * 18 16 14 20 20 H 1.48504 * 109.47104 * 209.99992 * 18 16 14 21 21 H 1.48495 * 109.47249 * 329.99739 * 18 16 14 22 22 H 1.08997 * 109.47412 * 300.00176 * 1 2 3 23 23 H 1.09009 * 109.46611 * 59.99853 * 1 2 3 24 24 H 1.08997 * 109.47493 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46777 * 239.99882 * 2 1 3 26 26 H 1.09004 * 109.46767 * 120.00584 * 2 1 3 27 27 H 1.09007 * 109.47229 * 300.00303 * 5 3 2 28 28 H 1.08998 * 109.46891 * 60.00063 * 5 3 2 29 29 H 1.08996 * 109.46778 * 59.99475 * 6 5 3 30 30 H 1.08994 * 109.47101 * 180.02562 * 6 5 3 31 31 H 1.09006 * 109.46614 * 180.02562 * 7 6 5 32 32 H 1.08991 * 109.47375 * 299.99636 * 7 6 5 33 33 H 1.08996 * 109.46813 * 179.97438 * 8 7 6 34 34 H 1.09003 * 109.47042 * 59.99198 * 8 7 6 35 35 H 1.09001 * 109.46665 * 60.00352 * 13 11 9 36 36 H 1.09000 * 109.47722 * 300.00684 * 13 11 9 37 37 H 0.97004 * 119.99507 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 2.1449 3.5692 1.3072 7 6 3.6698 3.5713 1.1812 8 6 4.0745 2.8873 -0.1262 9 6 3.5649 1.4442 -0.1257 10 1 3.9994 0.9051 0.7161 11 6 3.9635 0.7704 -1.4133 12 8 3.2297 0.8165 -2.3713 13 6 5.2780 0.0392 -1.5056 14 6 5.4344 -0.5406 -2.8878 15 1 4.6596 -0.3939 -3.6257 16 6 6.5666 -1.2583 -3.2103 17 7 7.5099 -1.4374 -2.3115 18 14 6.7607 -1.9764 -4.9238 19 1 7.4387 -0.9882 -5.8008 20 1 7.5758 -3.2156 -4.8518 21 1 5.4220 -2.2962 -5.4811 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.5489 2.1252 1.3969 28 1 2.0699 1.5874 2.1491 29 1 1.7100 4.1079 0.4653 30 1 1.8569 4.0563 2.2387 31 1 4.0329 4.5991 1.1815 32 1 4.1046 3.0325 2.0230 33 1 5.1608 2.8892 -0.2160 34 1 3.6396 3.4261 -0.9679 35 1 5.2988 -0.7650 -0.7702 36 1 6.0947 0.7335 -1.3078 37 1 8.3066 -1.9420 -2.5385 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401607219.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:59 Heat of formation + Delta-G solvation = -85.010319 kcal Electronic energy + Delta-G solvation = -15964.877531 eV Core-core repulsion = 13512.359389 eV Total energy + Delta-G solvation = -2452.518141 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.65030 -37.08571 -33.74100 -32.90387 -31.06082 -28.94985 -28.65408 -24.39360 -23.62699 -22.32233 -20.44932 -19.66149 -18.39725 -16.35547 -15.32951 -15.02873 -14.59723 -14.27193 -14.14114 -13.94443 -13.28587 -13.04316 -12.87498 -12.61073 -12.18122 -11.91681 -11.39625 -11.32154 -11.16033 -10.93397 -10.92798 -10.76316 -10.62402 -10.55255 -10.19075 -10.04645 -9.98986 -9.71787 -9.25608 -8.42006 -8.13888 -6.03834 -4.04449 3.11542 3.34228 3.39687 3.46403 4.45476 4.76787 4.82763 4.91593 5.21131 5.28690 5.33488 5.37090 5.49956 5.53756 5.63892 5.69998 5.76920 5.84402 5.87207 5.94479 6.14913 6.20153 6.21236 6.26788 6.29175 6.35918 6.46168 6.47916 6.62042 6.75938 6.85375 7.28672 7.39893 7.95231 8.26299 8.78783 9.05253 9.60571 11.08141 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.034784 B = 0.007083 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.768593 B = 3952.112514 C = 4428.743368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.072 4.072 4 H 0.075 0.925 5 C -0.114 4.114 6 C -0.119 4.119 7 C -0.116 4.116 8 C -0.105 4.105 9 C -0.138 4.138 10 H 0.088 0.912 11 C 0.362 3.638 12 O -0.465 6.465 13 C -0.027 4.027 14 C -0.515 4.515 15 H 0.071 0.929 16 C 0.056 3.944 17 N -0.900 5.900 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.272 1.272 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.544 7.343 8.920 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.091 4.091 4 H 0.093 0.907 5 C -0.151 4.151 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.143 4.143 9 C -0.157 4.157 10 H 0.106 0.894 11 C 0.238 3.762 12 O -0.339 6.339 13 C -0.064 4.064 14 C -0.553 4.553 15 H 0.089 0.911 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.769 7.278 8.431 14.815 hybrid contribution 0.396 -0.477 -0.744 0.968 sum -9.373 6.801 7.687 13.900 Atomic orbital electron populations 1.21766 0.96251 1.01117 1.01347 1.21624 0.95635 0.96568 1.02492 1.21026 0.94118 0.96165 0.97779 0.90661 1.21637 1.00271 0.95492 0.97700 1.21546 0.96004 0.96953 1.01194 1.21524 0.95769 1.00169 0.97902 1.21396 1.01203 0.93862 0.97797 1.21918 0.96365 0.97485 0.99923 0.89415 1.25137 0.88699 0.75839 0.86478 1.90212 1.52696 1.51707 1.39241 1.19616 0.90742 0.96497 0.99544 1.21209 1.04287 1.32720 0.97112 0.91058 1.25004 0.95774 0.96250 0.97452 1.69967 1.08624 1.41431 1.33915 0.86501 0.78170 0.78468 0.84392 1.20614 1.21236 1.19725 0.92996 0.92891 0.93174 0.91089 0.92326 0.92017 0.92108 0.92170 0.92454 0.92158 0.91892 0.91174 0.91850 0.93201 0.93160 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.67 37.16 0.36 -1.52 16 2 C -0.13 -1.91 5.21 -26.74 -0.14 -2.05 16 3 C -0.07 -1.08 1.37 -90.62 -0.12 -1.21 16 4 H 0.07 1.24 7.86 -51.93 -0.41 0.83 16 5 C -0.11 -1.35 4.96 -26.73 -0.13 -1.49 16 6 C -0.12 -1.33 5.92 -26.73 -0.16 -1.48 16 7 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 8 C -0.10 -1.56 5.19 -26.71 -0.14 -1.70 16 9 C -0.14 -2.30 2.00 -91.75 -0.18 -2.49 16 10 H 0.09 1.40 8.12 -51.93 -0.42 0.98 16 11 C 0.36 7.94 5.21 -29.04 -0.15 7.79 16 12 O -0.46 -11.39 14.51 5.99 0.09 -11.30 16 13 C -0.03 -0.70 5.38 -29.03 -0.16 -0.85 16 14 C -0.52 -14.99 8.92 -34.44 -0.31 -15.30 16 15 H 0.07 2.14 6.76 -52.49 -0.35 1.79 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 18 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 H 0.05 0.57 6.56 -51.93 -0.34 0.23 16 23 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.31 6.52 -51.93 -0.34 0.97 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.67 6.57 -51.92 -0.34 0.33 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 292.26 15.07 4.40 4.40 Total: -1.00 -30.58 292.26 -7.59 -38.17 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -6.41 Total: -2.22 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -1.39 Total: -20.31 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.58 -7.59 -38.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401607219.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.841 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds