Wall clock time and date at job start Mon Mar 30 2020 02:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47671 * 2 1 4 4 H 1.09003 * 109.46903 * 305.00389 * 3 2 1 5 5 C 1.53003 * 109.47078 * 64.99739 * 3 2 1 6 6 C 1.53001 * 109.47473 * 180.02562 * 5 3 2 7 7 C 1.53007 * 109.46425 * 300.00032 * 6 5 3 8 8 C 1.53002 * 109.47329 * 60.00270 * 7 6 5 9 9 C 1.52995 * 109.47452 * 184.99741 * 3 2 1 10 10 H 1.08998 * 109.47122 * 300.00307 * 9 3 2 11 11 C 1.50699 * 109.46945 * 60.00028 * 9 3 2 12 12 O 1.20765 * 120.00007 * 30.00338 * 11 9 3 13 13 C 1.50698 * 119.99996 * 209.99670 * 11 9 3 14 14 C 1.50706 * 109.47294 * 179.97438 * 13 11 9 15 15 H 1.07999 * 119.99515 * 0.02562 * 14 13 11 16 16 C 1.37870 * 120.00176 * 180.02562 * 14 13 11 17 17 N 1.31520 * 119.99883 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00043 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47293 * 89.99746 * 18 16 14 20 20 H 1.48504 * 109.47104 * 209.99992 * 18 16 14 21 21 H 1.48495 * 109.47249 * 329.99739 * 18 16 14 22 22 H 1.08997 * 109.47412 * 300.00176 * 1 2 3 23 23 H 1.09009 * 109.46611 * 59.99853 * 1 2 3 24 24 H 1.08997 * 109.47493 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46777 * 239.99882 * 2 1 3 26 26 H 1.09004 * 109.46767 * 120.00584 * 2 1 3 27 27 H 1.09007 * 109.47229 * 300.00303 * 5 3 2 28 28 H 1.08998 * 109.46891 * 60.00063 * 5 3 2 29 29 H 1.08996 * 109.46778 * 59.99475 * 6 5 3 30 30 H 1.08994 * 109.47101 * 180.02562 * 6 5 3 31 31 H 1.09006 * 109.46614 * 180.02562 * 7 6 5 32 32 H 1.08991 * 109.47375 * 299.99636 * 7 6 5 33 33 H 1.08996 * 109.46813 * 179.97438 * 8 7 6 34 34 H 1.09003 * 109.47042 * 59.99198 * 8 7 6 35 35 H 1.09001 * 109.46665 * 60.00352 * 13 11 9 36 36 H 1.09000 * 109.47722 * 300.00684 * 13 11 9 37 37 H 0.97004 * 119.99507 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 2.1449 3.5692 1.3072 7 6 3.6698 3.5713 1.1812 8 6 4.0745 2.8873 -0.1262 9 6 3.5649 1.4442 -0.1257 10 1 3.9994 0.9051 0.7161 11 6 3.9635 0.7704 -1.4133 12 8 3.2297 0.8165 -2.3713 13 6 5.2780 0.0392 -1.5056 14 6 5.4344 -0.5406 -2.8878 15 1 4.6596 -0.3939 -3.6257 16 6 6.5666 -1.2583 -3.2103 17 7 7.5099 -1.4374 -2.3115 18 14 6.7607 -1.9764 -4.9238 19 1 7.4387 -0.9882 -5.8008 20 1 7.5758 -3.2156 -4.8518 21 1 5.4220 -2.2962 -5.4811 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.5489 2.1252 1.3969 28 1 2.0699 1.5874 2.1491 29 1 1.7100 4.1079 0.4653 30 1 1.8569 4.0563 2.2387 31 1 4.0329 4.5991 1.1815 32 1 4.1046 3.0325 2.0230 33 1 5.1608 2.8892 -0.2160 34 1 3.6396 3.4261 -0.9679 35 1 5.2988 -0.7650 -0.7702 36 1 6.0947 0.7335 -1.3078 37 1 8.3066 -1.9420 -2.5385 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401607219.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:59 Heat of formation + Delta-G solvation = -101.530934 kcal Electronic energy + Delta-G solvation = -15965.593918 eV Core-core repulsion = 13512.359389 eV Total energy + Delta-G solvation = -2453.234529 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.12846 -38.58738 -35.16255 -34.80276 -32.43240 -30.74713 -29.89226 -26.27954 -24.73537 -23.82165 -21.56660 -20.83398 -20.05144 -18.54815 -17.00739 -16.66409 -15.98560 -15.84543 -15.61687 -15.12848 -14.75100 -14.34766 -14.16199 -14.11110 -13.65717 -13.41456 -13.07877 -12.83792 -12.59993 -12.47736 -12.33909 -12.17586 -12.03221 -11.92638 -11.65794 -11.48018 -11.31606 -11.20779 -10.84075 -10.65780 -9.90472 -8.27642 -6.36716 1.32092 1.35722 1.36767 1.49060 2.36919 3.06246 3.35630 3.66741 3.81832 4.05279 4.17960 4.31687 4.36787 4.48103 4.52359 4.56513 4.63657 4.72781 4.82606 4.88571 4.99293 5.03747 5.11406 5.15719 5.18982 5.25077 5.25310 5.31998 5.35446 5.38107 5.43037 5.55362 5.63495 5.67956 6.10086 6.75226 6.97052 7.32612 8.84077 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.034784 B = 0.007083 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.768593 B = 3952.112514 C = 4428.743368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C -0.068 4.068 4 H 0.056 0.944 5 C -0.107 4.107 6 C -0.118 4.118 7 C -0.110 4.110 8 C -0.105 4.105 9 C -0.128 4.128 10 H 0.099 0.901 11 C 0.367 3.633 12 O -0.495 6.495 13 C -0.030 4.030 14 C -0.545 4.545 15 H 0.053 0.947 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.961 3.039 19 H -0.270 1.270 20 H -0.273 1.273 21 H -0.274 1.274 22 H 0.077 0.923 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.027 0.973 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.039 0.961 36 H 0.041 0.959 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.357 8.102 10.254 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C -0.087 4.087 4 H 0.075 0.925 5 C -0.144 4.144 6 C -0.155 4.155 7 C -0.148 4.148 8 C -0.143 4.143 9 C -0.147 4.147 10 H 0.117 0.883 11 C 0.245 3.755 12 O -0.371 6.371 13 C -0.067 4.067 14 C -0.583 4.583 15 H 0.071 0.929 16 C -0.189 4.189 17 N -0.565 5.565 18 Si 0.786 3.214 19 H -0.196 1.196 20 H -0.197 1.197 21 H -0.199 1.199 22 H 0.096 0.904 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.577 8.045 9.781 16.500 hybrid contribution 0.687 -0.740 -1.172 1.547 sum -9.890 7.305 8.609 15.009 Atomic orbital electron populations 1.21729 0.94119 1.01869 1.02212 1.21632 0.97605 0.96468 1.00870 1.21010 0.92163 0.96179 0.99316 0.92519 1.21615 1.01493 0.95773 0.95560 1.21563 0.95075 0.96420 1.02475 1.21513 0.96659 1.00776 0.95810 1.21435 1.00551 0.92540 0.99749 1.21849 0.98212 0.98184 0.96437 0.88322 1.25270 0.86802 0.75060 0.88338 1.90192 1.53069 1.52856 1.41025 1.19563 0.92988 0.96382 0.97731 1.21455 1.04397 1.33973 0.98469 0.92857 1.25817 0.95256 0.96317 1.01530 1.70047 1.09007 1.41697 1.35713 0.85505 0.78137 0.78251 0.79539 1.19553 1.19743 1.19869 0.90411 0.93656 0.92570 0.95369 0.91252 0.90258 0.91014 0.92518 0.89756 0.90443 0.90902 0.92063 0.92913 0.94271 0.94092 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.67 71.98 0.70 -2.71 16 2 C -0.13 -3.85 5.21 30.59 0.16 -3.69 16 3 C -0.07 -1.97 1.37 -10.80 -0.01 -1.99 16 4 H 0.06 1.86 7.86 -2.39 -0.02 1.84 16 5 C -0.11 -2.20 4.96 30.60 0.15 -2.05 16 6 C -0.12 -2.19 5.92 30.60 0.18 -2.01 16 7 C -0.11 -2.28 5.92 30.60 0.18 -2.10 16 8 C -0.10 -3.05 5.19 30.61 0.16 -2.89 16 9 C -0.13 -4.26 2.00 -11.53 -0.02 -4.28 16 10 H 0.10 3.07 8.12 -2.39 -0.02 3.05 16 11 C 0.37 16.73 5.21 29.10 0.15 16.89 16 12 O -0.50 -25.45 14.51 -1.47 -0.02 -25.47 16 13 C -0.03 -1.58 5.38 29.10 0.16 -1.43 16 14 C -0.55 -32.88 8.92 25.60 0.23 -32.65 16 15 H 0.05 3.34 6.76 -2.91 -0.02 3.32 16 16 C 0.01 0.55 5.46 84.65 0.46 1.01 16 17 N -0.92 -55.53 13.29 21.45 0.28 -55.25 16 18 Si 0.96 46.07 29.54 68.60 2.03 48.10 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 22 H 0.08 1.46 6.56 -2.39 -0.02 1.45 16 23 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.03 1.07 6.52 -2.39 -0.02 1.05 16 26 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.08 1.39 6.57 -2.38 -0.02 1.38 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -67.46 292.26 5.79 -61.67 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.01 Total: 8.84 kcal Atomic # 6 Polarization: -40.39 SS G_CDS: 2.49 Total: -37.90 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.28 Total: -55.25 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.02 Total: -25.47 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -67.46 5.79 -61.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401607219.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.858 kcal (2) G-P(sol) polarization free energy of solvation -67.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds