Wall clock time and date at job start Mon Mar 30 2020 02:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.53817 * 2 1 4 4 C 1.54891 * 110.48596 * 237.39132 * 2 1 3 5 5 C 1.54890 * 102.74783 * 203.37948 * 4 2 1 6 6 C 1.54264 * 104.19404 * 37.94153 * 5 4 2 7 7 C 1.53004 * 110.07309 * 95.70036 * 6 5 4 8 8 C 1.50701 * 110.02922 * 217.10216 * 6 5 4 9 9 O 1.21442 * 120.00381 * 229.35409 * 8 6 5 10 10 C 1.41021 * 120.00003 * 49.36329 * 8 6 5 11 11 H 1.08008 * 119.99792 * 4.38054 * 10 8 6 12 12 C 1.40465 * 120.00158 * 184.38523 * 10 8 6 13 13 N 1.30514 * 120.00170 * 354.45708 * 12 10 8 14 14 Si 1.86799 * 119.99716 * 174.73362 * 12 10 8 15 15 H 1.48502 * 109.47079 * 95.00113 * 14 12 10 16 16 H 1.48505 * 109.47088 * 214.99721 * 14 12 10 17 17 H 1.48499 * 109.47568 * 334.99774 * 14 12 10 18 18 C 1.53865 * 106.60106 * 336.38832 * 6 5 4 19 19 C 1.53008 * 110.03191 * 119.28680 * 18 6 5 20 20 C 1.52996 * 110.03753 * 240.71416 * 18 6 5 21 21 H 1.08997 * 109.47327 * 297.38231 * 1 2 3 22 22 H 1.09002 * 109.47296 * 57.39044 * 1 2 3 23 23 H 1.09002 * 109.47108 * 177.38743 * 1 2 3 24 24 H 1.09002 * 110.75412 * 321.68970 * 4 2 1 25 25 H 1.08998 * 110.76278 * 85.06036 * 4 2 1 26 26 H 1.08998 * 110.48605 * 279.26391 * 5 4 2 27 27 H 1.09003 * 110.48660 * 156.61517 * 5 4 2 28 28 H 1.09006 * 109.46765 * 182.11554 * 7 6 5 29 29 H 1.09000 * 109.46705 * 302.11249 * 7 6 5 30 30 H 1.08993 * 109.47184 * 62.11489 * 7 6 5 31 31 H 0.96996 * 120.00318 * 179.97438 * 13 12 10 32 32 H 1.08997 * 109.47339 * 60.00152 * 19 18 6 33 33 H 1.09003 * 109.46726 * 180.02562 * 19 18 6 34 34 H 1.08999 * 109.46818 * 300.00203 * 19 18 6 35 35 H 1.09011 * 109.46900 * 67.69874 * 20 18 6 36 36 H 1.09000 * 109.47578 * 187.69794 * 20 18 6 37 37 H 1.09004 * 109.47318 * 307.70487 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0721 -0.7819 -1.2222 5 6 3.4907 -1.1979 -0.7601 6 6 3.3165 -1.5405 0.7339 7 6 3.1102 -3.0467 0.9067 8 6 4.5280 -1.0934 1.5107 9 8 5.0744 -1.8600 2.2779 10 6 5.0272 0.2152 1.3468 11 1 4.5009 0.9193 0.7192 12 6 6.2090 0.6030 1.9995 13 7 6.7862 -0.2099 2.8418 14 14 6.9501 2.2854 1.6680 15 1 6.4842 3.2440 2.7020 16 1 8.4315 2.1911 1.7121 17 1 6.5240 2.7584 0.3264 18 6 2.0700 -0.7789 1.2172 19 6 1.0139 -1.7663 1.7180 20 6 2.4506 0.1939 2.3350 21 1 -0.3634 0.4726 0.9125 22 1 -0.3634 0.5538 -0.8657 23 1 -0.3633 -1.0266 -0.0468 24 1 1.4580 -1.6600 -1.4223 25 1 2.1251 -0.1382 -2.1002 26 1 4.1897 -0.3707 -0.8827 27 1 3.8315 -2.0722 -1.3147 28 1 2.9509 -3.2730 1.9610 29 1 2.2397 -3.3625 0.3317 30 1 3.9930 -3.5776 0.5505 31 1 7.6025 0.0578 3.2923 32 1 1.4223 -2.3465 2.5454 33 1 0.1354 -1.2175 2.0574 34 1 0.7315 -2.4383 0.9076 35 1 3.0767 0.9880 1.9280 36 1 1.5467 0.6272 2.7632 37 1 2.9999 -0.3404 3.1103 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606267082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:24 Heat of formation + Delta-G solvation = -80.876475 kcal Electronic energy + Delta-G solvation = -17021.932205 eV Core-core repulsion = 14569.593321 eV Total energy + Delta-G solvation = -2452.338884 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.39533 -37.99779 -34.73842 -33.25671 -32.92937 -30.40189 -28.46812 -27.17846 -25.12336 -24.37039 -22.41173 -20.54360 -18.83896 -17.95769 -17.00565 -16.54707 -15.80623 -15.32688 -14.89249 -14.68845 -14.39585 -13.87610 -13.78521 -13.60353 -13.42907 -12.94557 -12.77530 -12.73393 -12.56965 -12.46629 -12.25708 -12.04224 -11.97525 -11.57383 -11.41429 -11.18429 -11.06284 -10.96508 -10.85798 -10.82806 -9.30262 -8.17405 -6.87654 1.33637 1.36612 1.51586 2.22552 2.29717 3.43063 3.77921 3.93118 3.97429 4.44927 4.49897 4.52466 4.59476 4.64014 4.67384 4.73207 4.85926 4.94400 4.96885 5.03300 5.05840 5.10512 5.17312 5.22668 5.27671 5.29564 5.34380 5.47833 5.51053 5.52121 5.69260 5.72386 5.76760 5.87843 6.10633 6.84563 6.99554 8.41472 8.65506 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.031355 B = 0.010975 C = 0.009907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.782170 B = 2550.711052 C = 2825.553004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 H 0.064 0.936 4 C -0.105 4.105 5 C -0.108 4.108 6 C -0.105 4.105 7 C -0.109 4.109 8 C 0.368 3.632 9 O -0.605 6.605 10 C -0.539 4.539 11 H 0.084 0.916 12 C 0.027 3.973 13 N -0.797 5.797 14 Si 0.975 3.025 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.246 1.246 18 C -0.039 4.039 19 C -0.131 4.131 20 C -0.131 4.131 21 H 0.054 0.946 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.022 0.978 31 H 0.275 0.725 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.068 3.093 -7.332 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 H 0.083 0.917 4 C -0.142 4.142 5 C -0.146 4.146 6 C -0.106 4.106 7 C -0.166 4.166 8 C 0.266 3.734 9 O -0.498 6.498 10 C -0.570 4.570 11 H 0.102 0.898 12 C -0.191 4.191 13 N -0.427 5.427 14 Si 0.795 3.205 15 H -0.187 1.187 16 H -0.199 1.199 17 H -0.169 1.169 18 C -0.040 4.040 19 C -0.188 4.188 20 C -0.188 4.188 21 H 0.073 0.927 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -10.717 2.647 -6.853 12.993 hybrid contribution 1.075 0.433 0.439 1.239 sum -9.642 3.080 -6.414 11.983 Atomic orbital electron populations 1.21829 0.93297 1.02410 1.01740 1.22008 0.96499 0.98323 0.93353 0.91718 1.22503 0.94497 0.99944 0.97272 1.22387 0.98512 1.00487 0.93210 1.21791 0.96568 0.95342 0.96886 1.21610 0.99791 0.95043 1.00147 1.20108 0.83728 0.88419 0.81138 1.90348 1.61515 1.58041 1.39862 1.21101 1.08332 0.99841 1.27776 0.89775 1.27119 0.97129 1.02273 0.92557 1.70117 1.15636 1.37483 1.19494 0.85329 0.77617 0.77127 0.80411 1.18695 1.19879 1.16924 1.20949 0.92954 0.94777 0.95286 1.22016 0.97788 0.98635 1.00374 1.22045 0.99487 0.99619 0.97632 0.92736 0.91722 0.91599 0.90466 0.90460 0.92265 0.92687 0.94787 0.90544 0.95887 0.91500 0.95096 0.91232 0.91042 0.91627 0.92742 0.97107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 7.99 71.98 0.58 -2.41 16 2 C -0.08 -2.44 2.91 -9.72 -0.03 -2.46 16 3 H 0.06 2.01 7.71 -2.39 -0.02 1.99 16 4 C -0.10 -2.93 6.33 31.89 0.20 -2.72 16 5 C -0.11 -4.04 5.79 31.67 0.18 -3.86 16 6 C -0.10 -4.54 0.79 -52.21 -0.04 -4.58 16 7 C -0.11 -4.51 6.53 71.98 0.47 -4.04 16 8 C 0.37 20.71 4.12 26.37 0.11 20.82 16 9 O -0.60 -40.26 14.58 -3.53 -0.05 -40.31 16 10 C -0.54 -29.41 5.82 23.50 0.14 -29.27 16 11 H 0.08 4.22 6.41 -2.91 -0.02 4.20 16 12 C 0.03 1.47 5.50 85.43 0.47 1.94 16 13 N -0.80 -48.16 11.74 21.91 0.26 -47.90 16 14 Si 0.98 40.31 29.57 68.60 2.03 42.34 16 15 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 16 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 17 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 18 C -0.04 -1.44 0.85 -51.46 -0.04 -1.48 16 19 C -0.13 -4.08 6.02 71.98 0.43 -3.65 16 20 C -0.13 -5.45 7.09 71.98 0.51 -4.94 16 21 H 0.05 1.17 7.68 -2.39 -0.02 1.16 16 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.07 1.33 6.57 -2.39 -0.02 1.31 16 24 H 0.08 1.88 8.04 -2.39 -0.02 1.87 16 25 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.06 2.43 6.42 -2.39 -0.02 2.41 16 27 H 0.05 1.97 7.84 -2.39 -0.02 1.95 16 28 H 0.03 1.51 6.68 -2.38 -0.02 1.49 16 29 H 0.08 2.51 6.70 -2.39 -0.02 2.50 16 30 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.27 15.06 8.29 -92.71 -0.77 14.29 16 32 H 0.03 1.08 6.76 -2.39 -0.02 1.07 16 33 H 0.07 1.83 6.83 -2.39 -0.02 1.81 16 34 H 0.07 1.93 6.08 -2.39 -0.01 1.91 16 35 H 0.06 2.90 5.24 -2.38 -0.01 2.88 16 36 H 0.05 1.90 8.13 -2.39 -0.02 1.88 16 37 H 0.01 0.50 7.07 -2.39 -0.02 0.49 16 Total: -1.00 -70.35 273.84 6.25 -64.10 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 1.04 Total: 18.42 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 2.98 Total: -36.65 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.26 Total: -47.90 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -0.05 Total: -40.31 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -70.35 6.25 -64.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606267082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.780 kcal (2) G-P(sol) polarization free energy of solvation -70.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds