Wall clock time and date at job start Mon Mar 30 2020 03:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00230 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00341 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99962 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47429 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47378 * 179.97438 * 10 9 7 12 12 C 1.47477 * 110.99870 * 74.03007 * 11 10 9 13 13 C 1.53509 * 87.93103 * 138.70236 * 12 11 10 14 14 N 1.46904 * 114.17121 * 220.32644 * 13 12 11 15 15 C 1.48540 * 110.99980 * 151.44657 * 14 13 12 16 16 C 1.54930 * 103.22511 * 159.72047 * 15 14 13 17 17 C 1.54596 * 102.92789 * 322.58792 * 16 15 14 18 18 C 1.47904 * 111.00005 * 268.84209 * 14 13 12 19 19 C 1.47480 * 111.00036 * 170.00204 * 11 10 9 20 20 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 22 22 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 23 23 H 1.09004 * 109.46862 * 60.00067 * 10 9 7 24 24 H 1.09000 * 109.47250 * 300.00090 * 10 9 7 25 25 H 1.09001 * 113.47815 * 253.47104 * 12 11 10 26 26 H 1.09007 * 113.47621 * 23.93868 * 12 11 10 27 27 H 1.09005 * 114.34469 * 87.63663 * 13 12 11 28 28 H 1.08998 * 110.66387 * 278.15954 * 15 14 13 29 29 H 1.08994 * 110.66183 * 41.28695 * 15 14 13 30 30 H 1.09000 * 110.72246 * 204.22617 * 16 15 14 31 31 H 1.09009 * 110.72467 * 80.94629 * 16 15 14 32 32 H 1.08995 * 110.30874 * 263.04476 * 17 16 15 33 33 H 1.08992 * 110.31131 * 140.86964 * 17 16 15 34 34 H 1.08990 * 109.91990 * 333.51002 * 18 14 13 35 35 H 1.09002 * 109.91329 * 94.60916 * 18 14 13 36 36 H 1.08997 * 113.47604 * 336.06347 * 19 11 10 37 37 H 1.08991 * 113.47748 * 106.47035 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 7 1.5106 -4.9343 -0.0033 12 6 0.9179 -5.2018 -1.3269 13 6 1.3436 -6.6671 -1.1597 14 7 1.8704 -7.2840 -2.3844 15 6 2.8470 -8.3561 -2.0629 16 6 2.8786 -9.2066 -3.3575 17 6 1.4043 -9.1843 -3.8221 18 6 0.7910 -7.9395 -3.1544 19 6 2.4206 -6.0698 -0.2433 20 1 -0.4851 0.8400 0.0004 21 1 0.6247 -2.5563 -0.8920 22 1 0.6240 -2.5576 0.8880 23 1 2.8718 -3.6051 0.8873 24 1 2.8718 -3.6035 -0.8927 25 1 -0.1630 -5.0640 -1.3545 26 1 1.4295 -4.6914 -2.1430 27 1 0.6140 -7.2909 -0.6432 28 1 3.8298 -7.9321 -1.8569 29 1 2.4996 -8.9523 -1.2192 30 1 3.1996 -10.2257 -3.1417 31 1 3.5256 -8.7474 -4.1050 32 1 0.8889 -10.0850 -3.4886 33 1 1.3508 -9.0966 -4.9071 34 1 -0.0153 -8.2368 -2.4841 35 1 0.4097 -7.2570 -3.9140 36 1 3.3332 -5.7911 -0.7701 37 1 2.6140 -6.6671 0.6476 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697793601.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:20 Heat of formation + Delta-G solvation = 33.146833 kcal Electronic energy + Delta-G solvation = -15422.582261 eV Core-core repulsion = 13007.480549 eV Total energy + Delta-G solvation = -2415.101712 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.11120 -37.86206 -33.49196 -31.82593 -29.98082 -29.02651 -26.49094 -25.46263 -23.46062 -21.63265 -20.83873 -20.08705 -19.40264 -16.54053 -16.23917 -15.95624 -15.15314 -14.54603 -14.34763 -13.82120 -13.60098 -13.13832 -12.89163 -12.43407 -12.16461 -11.95851 -11.75545 -11.47695 -11.27388 -11.07830 -10.95477 -10.72812 -10.63910 -10.43869 -10.18838 -9.77057 -9.29144 -9.10157 -8.45360 -8.36077 -8.25376 -5.96694 -3.99362 3.34236 3.40119 3.43692 3.89598 4.38913 4.46319 4.53048 4.72219 4.81810 4.84740 5.16546 5.27628 5.38960 5.39191 5.53372 5.61090 5.66450 5.67795 5.78028 5.87716 5.88391 5.92646 6.03929 6.08321 6.19940 6.27206 6.41548 6.82423 6.86309 7.10880 7.14623 7.50606 7.76116 7.90770 8.09389 8.45591 9.07731 9.64234 11.14788 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.057088 B = 0.004709 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.353245 B = 5944.048872 C = 6002.794240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.029 3.971 10 C 0.031 3.969 11 N -0.473 5.473 12 C 0.023 3.977 13 C 0.034 3.966 14 N -0.507 5.507 15 C 0.036 3.964 16 C -0.124 4.124 17 C -0.131 4.131 18 C 0.035 3.965 19 C 0.006 3.994 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.023 0.977 23 H 0.062 0.938 24 H 0.030 0.970 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.670 -18.194 -5.855 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.097 4.097 11 N -0.196 5.196 12 C -0.106 4.106 13 C -0.075 4.075 14 N -0.232 5.232 15 C -0.092 4.092 16 C -0.162 4.162 17 C -0.169 4.169 18 C -0.093 4.093 19 C -0.124 4.124 20 H 0.070 0.930 21 H 0.034 0.966 22 H 0.042 0.958 23 H 0.081 0.919 24 H 0.048 0.952 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.346 -17.576 -5.517 18.723 hybrid contribution 0.552 0.469 -0.183 0.748 sum 3.899 -17.107 -5.700 18.448 Atomic orbital electron populations 1.69976 1.06049 1.26558 1.50707 1.24997 0.94826 0.99187 0.95296 0.86588 0.79842 0.83466 0.78071 1.20680 1.21195 1.19877 1.21196 0.92976 0.91060 1.50834 0.92774 1.19014 0.93871 0.90179 0.97749 1.22827 0.97382 0.90015 0.99486 1.68941 1.20228 1.03218 1.27173 1.23700 1.01377 0.92712 0.92825 1.23575 0.97716 0.95964 0.90201 1.64965 1.12328 1.27474 1.18387 1.23164 0.97372 0.92127 0.96550 1.22482 0.96707 0.99522 0.97493 1.22406 0.95996 0.97598 1.00927 1.22864 0.93612 0.95081 0.97709 1.23831 0.95857 0.94859 0.97839 0.93008 0.96609 0.95834 0.91946 0.95178 0.90377 0.90509 0.90550 0.90068 0.93799 0.91275 0.90770 0.91727 0.91101 0.93736 0.90251 0.91096 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.48 13.29 55.43 0.74 -26.75 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.79 5.08 -27.89 -0.14 0.65 16 10 C 0.03 0.68 4.76 -3.82 -0.02 0.67 16 11 N -0.47 -9.16 6.41 -244.66 -1.57 -10.73 16 12 C 0.02 0.41 6.82 -7.55 -0.05 0.36 16 13 C 0.03 0.50 3.42 -67.50 -0.23 0.26 16 14 N -0.51 -6.51 5.27 -222.18 -1.17 -7.68 16 15 C 0.04 0.38 5.90 -1.90 -0.01 0.37 16 16 C -0.12 -1.09 7.06 -24.87 -0.18 -1.26 16 17 C -0.13 -1.15 6.93 -25.37 -0.18 -1.33 16 18 C 0.04 0.39 6.70 -2.75 -0.02 0.37 16 19 C 0.01 0.09 6.74 -7.55 -0.05 0.04 16 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 21 H 0.02 0.45 7.67 -51.93 -0.40 0.05 16 22 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 24 H 0.03 0.66 7.56 -51.93 -0.39 0.27 16 25 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.08 1.44 7.70 -51.93 -0.40 1.04 16 27 H 0.08 1.07 7.77 -51.93 -0.40 0.67 16 28 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 29 H 0.04 0.45 8.02 -51.93 -0.42 0.03 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.04 0.48 7.54 -51.93 -0.39 0.09 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.11 7.77 -51.93 -0.40 0.70 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 295.29 15.07 4.45 4.45 Total: -1.00 -30.82 295.29 -10.43 -41.26 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -6.57 Total: -3.77 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -1.29 Total: -13.79 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -2.00 Total: -45.16 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.82 -10.43 -41.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697793601.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.404 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds