Wall clock time and date at job start Mon Mar 30 2020 03:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99910 * 2 1 4 4 H 1.48496 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46995 * 300.00015 * 3 2 1 6 6 H 1.48508 * 109.47079 * 60.00037 * 3 2 1 7 7 C 1.37876 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00463 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99771 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47243 * 185.21004 * 9 7 2 11 11 C 1.48599 * 110.99835 * 175.71024 * 10 9 7 12 12 C 1.54500 * 104.60478 * 201.18727 * 11 10 9 13 13 C 1.53826 * 104.88400 * 23.80387 * 12 11 10 14 14 C 1.48668 * 110.99474 * 60.20104 * 10 9 7 15 15 C 1.52532 * 110.16358 * 118.65631 * 13 12 11 16 16 C 1.53221 * 109.18485 * 65.65529 * 15 13 12 17 17 C 1.53048 * 109.21627 * 56.85094 * 16 15 13 18 18 N 1.46845 * 109.59599 * 300.38598 * 17 16 15 19 19 C 1.46937 * 111.16259 * 62.14854 * 18 17 16 20 20 H 0.96995 * 120.00155 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47168 * 65.21054 * 9 7 2 22 22 H 1.09004 * 109.47328 * 305.21222 * 9 7 2 23 23 H 1.08995 * 110.40840 * 82.40805 * 11 10 9 24 24 H 1.08997 * 110.41297 * 319.96325 * 11 10 9 25 25 H 1.08999 * 110.35846 * 264.95669 * 12 11 10 26 26 H 1.08991 * 110.44914 * 142.70191 * 12 11 10 27 27 H 1.08998 * 110.43273 * 39.90441 * 14 10 9 28 28 H 1.09005 * 110.42929 * 277.40422 * 14 10 9 29 29 H 1.08993 * 109.52465 * 305.74239 * 15 13 12 30 30 H 1.09006 * 109.51980 * 185.56375 * 15 13 12 31 31 H 1.08999 * 109.51734 * 296.92859 * 16 15 13 32 32 H 1.09001 * 109.56040 * 176.79663 * 16 15 13 33 33 H 1.09000 * 109.44990 * 180.34815 * 17 16 15 34 34 H 1.08994 * 109.44824 * 60.42256 * 17 16 15 35 35 H 1.00902 * 110.99826 * 186.22055 * 18 17 16 36 36 H 1.08997 * 109.45251 * 59.18422 * 19 18 17 37 37 H 1.09003 * 109.45422 * 179.13332 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2008 -3.6128 0.1269 11 6 1.4869 -4.9117 0.2340 12 6 2.5102 -5.8657 0.8898 13 6 3.4793 -4.9438 1.6495 14 6 2.9733 -3.5129 1.3932 15 6 3.4389 -5.2543 3.1423 16 6 3.9845 -6.6666 3.3778 17 6 5.3995 -6.7624 2.8026 18 7 5.3666 -6.4741 1.3631 19 6 4.8951 -5.1062 1.1067 20 1 -0.4850 0.8400 0.0004 21 1 0.6967 -2.5986 -0.9326 22 1 0.5559 -2.5174 0.8399 23 1 1.2084 -5.2750 -0.7552 24 1 0.6041 -4.8095 0.8650 25 1 3.0447 -6.4312 0.1265 26 1 2.0101 -6.5430 1.5819 27 1 2.3276 -3.1860 2.2081 28 1 3.8130 -2.8282 1.2736 29 1 2.4105 -5.1971 3.4986 30 1 4.0526 -4.5324 3.6812 31 1 3.3402 -7.3931 2.8825 32 1 4.0116 -6.8737 4.4476 33 1 5.7890 -7.7678 2.9626 34 1 6.0443 -6.0399 3.3028 35 1 6.2704 -6.6299 0.9424 36 1 5.5572 -4.3954 1.6012 37 1 4.8963 -4.9171 0.0333 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709970366.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:30 Heat of formation + Delta-G solvation = -5.444195 kcal Electronic energy + Delta-G solvation = -16182.052193 eV Core-core repulsion = 13765.277049 eV Total energy + Delta-G solvation = -2416.775144 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.71136 -36.45480 -33.08891 -31.90471 -30.95679 -29.11600 -26.49304 -24.81329 -23.66940 -22.14000 -21.37064 -19.89422 -18.02960 -16.41276 -16.13562 -15.02488 -15.01427 -14.48902 -14.02974 -13.84765 -13.37205 -13.01283 -12.75033 -12.62956 -12.22317 -11.73007 -11.65203 -11.14145 -11.02878 -10.86876 -10.68803 -10.55194 -10.43797 -10.18241 -9.89669 -9.85434 -9.73830 -9.08338 -8.43876 -8.34447 -7.29225 -6.01920 -4.03219 3.30875 3.38156 3.43003 4.28756 4.43929 4.86614 4.94805 5.03803 5.21614 5.33452 5.34047 5.39464 5.52801 5.65961 5.78642 5.84675 5.87627 5.98685 6.02648 6.10520 6.21262 6.29531 6.42101 6.48216 6.51493 6.68854 6.77042 6.84142 7.12910 7.26855 7.39904 7.46298 7.79350 8.02641 8.22984 8.55198 9.05682 9.61376 11.09427 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.041938 B = 0.006825 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.499387 B = 4101.760067 C = 4366.049526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.181 3.819 10 N -0.509 5.509 11 C 0.026 3.974 12 C -0.099 4.099 13 C -0.062 4.062 14 C 0.061 3.939 15 C -0.109 4.109 16 C -0.117 4.117 17 C 0.059 3.941 18 N -0.689 5.689 19 C 0.077 3.923 20 H 0.260 0.740 21 H 0.028 0.972 22 H -0.004 1.004 23 H 0.068 0.932 24 H 0.031 0.969 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.025 0.975 35 H 0.338 0.662 36 H 0.025 0.975 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.515 -12.353 5.663 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.055 3.945 10 N -0.233 5.233 11 C -0.102 4.102 12 C -0.137 4.137 13 C -0.063 4.063 14 C -0.068 4.068 15 C -0.147 4.147 16 C -0.154 4.154 17 C -0.070 4.070 18 N -0.320 5.320 19 C -0.051 4.051 20 H 0.070 0.930 21 H 0.046 0.954 22 H 0.013 0.987 23 H 0.086 0.914 24 H 0.049 0.951 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.155 0.845 36 H 0.044 0.956 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.078 -12.470 5.088 15.705 hybrid contribution 0.513 1.585 1.008 1.947 sum 8.591 -10.885 6.095 15.147 Atomic orbital electron populations 1.69970 1.06063 1.26610 1.51165 1.24998 0.94853 0.99321 0.95453 0.86467 0.80081 0.83523 0.77520 1.19689 1.20965 1.21122 1.21200 0.93464 0.90037 1.49926 0.91941 1.19881 0.90425 0.87912 0.96299 1.65464 1.23836 1.01917 1.32068 1.23131 0.95540 0.92122 0.99441 1.22229 0.95939 0.96686 0.98815 1.21016 0.94877 0.96381 0.94059 1.22843 0.98225 0.93556 0.92197 1.21586 1.01024 0.96198 0.95858 1.21620 0.96340 0.97914 0.99569 1.21874 0.96844 0.99799 0.88515 1.60286 1.32327 1.27060 1.12293 1.21871 0.94617 0.87317 1.01334 0.93002 0.95385 0.98662 0.91392 0.95112 0.90798 0.92510 0.94261 0.90819 0.91872 0.92411 0.91092 0.92159 0.91424 0.95667 0.84471 0.95628 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.52 8.57 -34.44 -0.30 -14.82 16 8 H 0.06 1.77 7.16 -52.49 -0.38 1.39 16 9 C 0.18 4.86 4.67 -4.97 -0.02 4.83 16 10 N -0.51 -11.38 5.44 -231.50 -1.26 -12.64 16 11 C 0.03 0.50 6.51 -2.10 -0.01 0.49 16 12 C -0.10 -1.57 5.58 -25.51 -0.14 -1.71 16 13 C -0.06 -0.98 0.68 -154.10 -0.10 -1.09 16 14 C 0.06 1.21 4.78 -2.37 -0.01 1.20 16 15 C -0.11 -1.50 4.47 -26.86 -0.12 -1.62 16 16 C -0.12 -1.35 5.87 -26.59 -0.16 -1.50 16 17 C 0.06 0.65 6.53 -3.83 -0.03 0.62 16 18 N -0.69 -8.35 6.45 -114.05 -0.74 -9.08 16 19 C 0.08 1.12 4.93 -4.06 -0.02 1.10 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.00 -0.13 7.98 -51.93 -0.41 -0.54 16 23 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.03 0.60 7.90 -51.93 -0.41 0.19 16 25 H 0.07 1.17 7.55 -51.93 -0.39 0.78 16 26 H 0.06 0.83 6.73 -51.93 -0.35 0.48 16 27 H 0.04 0.84 7.66 -51.93 -0.40 0.44 16 28 H 0.07 1.54 7.25 -51.93 -0.38 1.16 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.85 6.91 -51.93 -0.36 0.49 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.34 3.45 8.90 -39.29 -0.35 3.10 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 283.73 15.07 4.28 4.28 Total: -1.00 -29.98 283.73 -9.38 -39.36 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.36 Total: -1.37 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -1.01 Total: -11.01 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -1.26 Total: -48.11 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.98 -9.38 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709970366.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.913 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds