Wall clock time and date at job start Mon Mar 30 2020 03:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99910 * 2 1 4 4 H 1.48496 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46995 * 300.00015 * 3 2 1 6 6 H 1.48508 * 109.47079 * 60.00037 * 3 2 1 7 7 C 1.37876 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00463 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99771 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47243 * 185.21004 * 9 7 2 11 11 C 1.48599 * 110.99835 * 175.71024 * 10 9 7 12 12 C 1.54500 * 104.60478 * 201.18727 * 11 10 9 13 13 C 1.53826 * 104.88400 * 23.80387 * 12 11 10 14 14 C 1.48668 * 110.99474 * 60.20104 * 10 9 7 15 15 C 1.52532 * 110.16358 * 118.65631 * 13 12 11 16 16 C 1.53221 * 109.18485 * 65.65529 * 15 13 12 17 17 C 1.53048 * 109.21627 * 56.85094 * 16 15 13 18 18 N 1.46845 * 109.59599 * 300.38598 * 17 16 15 19 19 C 1.46937 * 111.16259 * 62.14854 * 18 17 16 20 20 H 0.96995 * 120.00155 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47168 * 65.21054 * 9 7 2 22 22 H 1.09004 * 109.47328 * 305.21222 * 9 7 2 23 23 H 1.08995 * 110.40840 * 82.40805 * 11 10 9 24 24 H 1.08997 * 110.41297 * 319.96325 * 11 10 9 25 25 H 1.08999 * 110.35846 * 264.95669 * 12 11 10 26 26 H 1.08991 * 110.44914 * 142.70191 * 12 11 10 27 27 H 1.08998 * 110.43273 * 39.90441 * 14 10 9 28 28 H 1.09005 * 110.42929 * 277.40422 * 14 10 9 29 29 H 1.08993 * 109.52465 * 305.74239 * 15 13 12 30 30 H 1.09006 * 109.51980 * 185.56375 * 15 13 12 31 31 H 1.08999 * 109.51734 * 296.92859 * 16 15 13 32 32 H 1.09001 * 109.56040 * 176.79663 * 16 15 13 33 33 H 1.09000 * 109.44990 * 180.34815 * 17 16 15 34 34 H 1.08994 * 109.44824 * 60.42256 * 17 16 15 35 35 H 1.00902 * 110.99826 * 186.22055 * 18 17 16 36 36 H 1.08997 * 109.45251 * 59.18422 * 19 18 17 37 37 H 1.09003 * 109.45422 * 179.13332 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2008 -3.6128 0.1269 11 6 1.4869 -4.9117 0.2340 12 6 2.5102 -5.8657 0.8898 13 6 3.4793 -4.9438 1.6495 14 6 2.9733 -3.5129 1.3932 15 6 3.4389 -5.2543 3.1423 16 6 3.9845 -6.6666 3.3778 17 6 5.3995 -6.7624 2.8026 18 7 5.3666 -6.4741 1.3631 19 6 4.8951 -5.1062 1.1067 20 1 -0.4850 0.8400 0.0004 21 1 0.6967 -2.5986 -0.9326 22 1 0.5559 -2.5174 0.8399 23 1 1.2084 -5.2750 -0.7552 24 1 0.6041 -4.8095 0.8650 25 1 3.0447 -6.4312 0.1265 26 1 2.0101 -6.5430 1.5819 27 1 2.3276 -3.1860 2.2081 28 1 3.8130 -2.8282 1.2736 29 1 2.4105 -5.1971 3.4986 30 1 4.0526 -4.5324 3.6812 31 1 3.3402 -7.3931 2.8825 32 1 4.0116 -6.8737 4.4476 33 1 5.7890 -7.7678 2.9626 34 1 6.0443 -6.0399 3.3028 35 1 6.2704 -6.6299 0.9424 36 1 5.5572 -4.3954 1.6012 37 1 4.8963 -4.9171 0.0333 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709970366.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:29 Heat of formation + Delta-G solvation = -27.370496 kcal Electronic energy + Delta-G solvation = -16183.002988 eV Core-core repulsion = 13765.277049 eV Total energy + Delta-G solvation = -2417.725940 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.03773 -37.87663 -35.08452 -33.27066 -32.26716 -30.66194 -28.42224 -26.36114 -24.74516 -23.97562 -22.55321 -21.57844 -19.31374 -18.35640 -17.46880 -16.75981 -16.53324 -15.92034 -15.27106 -15.12811 -14.96356 -14.55130 -14.13575 -13.99601 -13.66751 -13.45434 -13.29452 -12.91692 -12.54964 -12.42474 -12.32582 -12.06153 -11.84931 -11.76723 -11.42560 -11.23260 -11.07959 -11.06003 -10.66422 -9.31477 -9.16988 -8.24790 -6.35453 1.37836 1.38740 1.52474 2.37442 3.08189 3.28457 3.40070 3.78249 3.82485 3.91281 4.20544 4.22340 4.35293 4.45427 4.58203 4.67375 4.73669 4.80341 4.82564 4.88518 4.93827 4.99421 5.07431 5.08209 5.15348 5.22185 5.24498 5.34659 5.50757 5.53107 5.61893 5.95645 6.12346 6.22427 6.51319 6.59678 6.81545 7.34973 8.87496 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.041938 B = 0.006825 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.499387 B = 4101.760067 C = 4366.049526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.196 3.804 10 N -0.518 5.518 11 C 0.022 3.978 12 C -0.084 4.084 13 C -0.055 4.055 14 C 0.062 3.938 15 C -0.108 4.108 16 C -0.112 4.112 17 C 0.058 3.942 18 N -0.689 5.689 19 C 0.085 3.915 20 H 0.265 0.735 21 H 0.000 1.000 22 H -0.036 1.036 23 H 0.073 0.927 24 H 0.021 0.979 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.018 0.982 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.028 0.972 35 H 0.352 0.648 36 H 0.025 0.975 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.362 -13.311 6.451 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.242 5.242 11 C -0.106 4.106 12 C -0.122 4.122 13 C -0.057 4.057 14 C -0.066 4.066 15 C -0.146 4.146 16 C -0.149 4.149 17 C -0.071 4.071 18 N -0.321 5.321 19 C -0.045 4.045 20 H 0.074 0.926 21 H 0.018 0.982 22 H -0.018 1.018 23 H 0.092 0.908 24 H 0.039 0.961 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.036 0.964 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.046 0.954 35 H 0.171 0.829 36 H 0.043 0.957 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.945 -13.457 5.876 17.735 hybrid contribution -0.098 1.846 0.757 1.997 sum 9.847 -11.612 6.634 16.607 Atomic orbital electron populations 1.70097 1.07809 1.27933 1.51683 1.25959 0.95778 1.03353 0.94620 0.85310 0.78921 0.78366 0.77891 1.18705 1.20147 1.20228 1.21464 0.93515 0.91096 1.50319 0.92043 1.19531 0.90412 0.89588 0.93526 1.65361 1.23148 1.01919 1.33732 1.23240 0.96050 0.91231 1.00089 1.22156 0.94964 0.96020 0.99061 1.20951 0.95702 0.93098 0.95902 1.22829 0.96990 0.96511 0.90307 1.21575 1.00955 0.98177 0.93906 1.21612 0.96543 0.95685 1.01096 1.21965 0.96496 1.01221 0.87444 1.60236 1.33393 1.24959 1.13494 1.21656 0.93623 0.88984 1.00208 0.92594 0.98174 1.01787 0.90839 0.96077 0.90051 0.90575 0.96354 0.92087 0.92589 0.92401 0.91171 0.90022 0.89047 0.95391 0.82945 0.95720 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.53 -30.92 8.57 25.60 0.22 -30.70 16 8 H 0.06 3.55 7.16 -2.91 -0.02 3.53 16 9 C 0.20 11.08 4.67 85.56 0.40 11.48 16 10 N -0.52 -23.91 5.44 -886.33 -4.82 -28.73 16 11 C 0.02 0.85 6.51 86.48 0.56 1.42 16 12 C -0.08 -2.56 5.58 31.38 0.18 -2.38 16 13 C -0.06 -1.70 0.68 -51.91 -0.04 -1.74 16 14 C 0.06 2.56 4.78 86.27 0.41 2.97 16 15 C -0.11 -2.81 4.47 30.51 0.14 -2.67 16 16 C -0.11 -2.20 5.87 30.68 0.18 -2.02 16 17 C 0.06 1.05 6.53 86.33 0.56 1.61 16 18 N -0.69 -14.66 6.45 -514.75 -3.32 -17.98 16 19 C 0.08 2.32 4.93 86.13 0.42 2.74 16 20 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 21 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 22 H -0.04 -2.18 7.98 -2.38 -0.02 -2.20 16 23 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 24 H 0.02 0.85 7.90 -2.39 -0.02 0.83 16 25 H 0.08 2.39 7.55 -2.39 -0.02 2.38 16 26 H 0.08 2.05 6.73 -2.39 -0.02 2.03 16 27 H 0.02 0.81 7.66 -2.39 -0.02 0.79 16 28 H 0.06 2.61 7.25 -2.38 -0.02 2.59 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.07 1.43 6.91 -2.39 -0.02 1.41 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.35 6.09 8.90 -89.69 -0.80 5.29 16 36 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -65.59 283.73 -2.10 -67.69 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.23 Total: 8.08 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 3.50 Total: -18.78 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -7.86 Total: -104.16 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -65.59 -2.10 -67.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709970366.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.319 kcal (2) G-P(sol) polarization free energy of solvation -65.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds