Wall clock time and date at job start Mon Mar 30 2020 03:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00135 * 2 1 4 4 H 1.48499 * 109.47134 * 269.99634 * 3 2 1 5 5 H 1.48497 * 109.46613 * 29.99906 * 3 2 1 6 6 H 1.48505 * 109.46899 * 149.99794 * 3 2 1 7 7 C 1.37882 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99751 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99983 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.47061 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46869 * 180.02562 * 10 9 7 12 12 C 1.48043 * 110.99464 * 170.00331 * 11 10 9 13 13 C 1.53460 * 86.02083 * 222.72138 * 12 11 10 14 14 C 1.48039 * 111.00138 * 70.53804 * 11 10 9 15 15 C 1.52740 * 113.62610 * 269.01106 * 13 12 11 16 16 C 1.53304 * 108.87443 * 282.41056 * 15 13 12 17 17 C 1.53025 * 109.19562 * 304.57077 * 16 15 13 18 18 N 1.46836 * 109.75264 * 60.99542 * 17 16 15 19 19 C 1.47022 * 111.17146 * 296.48046 * 18 17 16 20 20 H 0.96998 * 119.99879 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46938 * 60.00481 * 9 7 2 22 22 H 1.08996 * 109.47574 * 299.99958 * 9 7 2 23 23 H 1.09001 * 109.46915 * 60.00389 * 10 9 7 24 24 H 1.08996 * 109.46829 * 300.00337 * 10 9 7 25 25 H 1.09001 * 113.78597 * 108.44399 * 12 11 10 26 26 H 1.08998 * 113.89202 * 337.00788 * 12 11 10 27 27 H 1.09007 * 113.78723 * 23.00153 * 14 11 10 28 28 H 1.09000 * 113.78843 * 251.55762 * 14 11 10 29 29 H 1.08996 * 109.56730 * 42.22711 * 15 13 12 30 30 H 1.08998 * 109.56855 * 162.59429 * 15 13 12 31 31 H 1.09000 * 109.51627 * 184.65230 * 16 15 13 32 32 H 1.08999 * 109.51621 * 64.48561 * 16 15 13 33 33 H 1.08999 * 109.42727 * 300.90923 * 17 16 15 34 34 H 1.09000 * 109.42704 * 181.07993 * 17 16 15 35 35 H 1.00900 * 110.99838 * 172.40205 * 18 17 16 36 36 H 1.08994 * 109.50473 * 179.25671 * 19 18 17 37 37 H 1.09012 * 109.50088 * 299.32796 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6366 0.0010 11 7 5.4906 -2.6365 0.0022 12 6 6.0209 -3.9978 0.2420 13 6 7.0319 -3.3230 1.1787 14 6 6.0200 -2.1765 1.3059 15 6 8.3321 -2.9185 0.4868 16 6 9.2042 -4.1656 0.3015 17 6 9.4159 -4.8378 1.6598 18 7 8.1212 -5.2486 2.2174 19 6 7.2632 -4.0843 2.4813 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8752 -0.6804 -0.8888 23 1 3.6586 -3.1502 -0.8893 24 1 3.6578 -3.1506 0.8907 25 1 6.4737 -4.4545 -0.6380 26 1 5.3221 -4.6600 0.7532 27 1 5.3198 -2.2980 2.1324 28 1 6.4722 -1.1853 1.2717 29 1 8.1072 -2.4823 -0.4865 30 1 8.8617 -2.1907 1.1015 31 1 10.1686 -3.8768 -0.1162 32 1 8.7068 -4.8605 -0.3751 33 1 9.8974 -4.1358 2.3406 34 1 10.0516 -5.7145 1.5353 35 1 8.2461 -5.8023 3.0516 36 1 6.3066 -4.4203 2.8813 37 1 7.7502 -3.4299 3.2045 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709971802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:37 Heat of formation + Delta-G solvation = 22.797714 kcal Electronic energy + Delta-G solvation = -15795.921348 eV Core-core repulsion = 13380.370865 eV Total energy + Delta-G solvation = -2415.550483 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.53296 -36.95562 -33.45449 -32.00162 -31.36646 -29.10034 -25.91096 -25.52130 -24.08005 -22.50998 -21.10803 -19.78538 -18.12302 -16.89064 -16.40466 -15.33758 -14.92070 -14.65388 -14.42217 -14.07457 -13.79089 -13.31687 -13.01815 -12.82272 -12.50235 -12.22407 -11.88161 -11.45557 -11.29682 -11.03962 -10.92589 -10.46506 -10.33741 -10.13409 -10.01712 -9.72339 -9.48269 -9.18408 -8.58666 -8.51471 -8.21232 -6.02490 -4.00435 3.34001 3.40504 3.45819 3.99216 4.36097 4.48072 4.62951 4.73849 4.92377 5.01296 5.18610 5.32285 5.39184 5.44693 5.55887 5.61306 5.67368 5.73788 5.82125 5.89009 5.97244 6.01727 6.10993 6.15241 6.30794 6.32496 6.50987 6.75457 6.85917 6.97737 7.21853 7.22497 7.44460 7.65645 7.86686 8.55518 9.01812 9.60282 11.10978 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.055529 B = 0.005680 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.123793 B = 4928.494740 C = 5088.380976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.006 4.006 10 C 0.038 3.962 11 N -0.483 5.483 12 C 0.024 3.976 13 C -0.085 4.085 14 C 0.015 3.985 15 C -0.091 4.091 16 C -0.116 4.116 17 C 0.059 3.941 18 N -0.687 5.687 19 C 0.071 3.929 20 H 0.263 0.737 21 H 0.013 0.987 22 H 0.019 0.981 23 H 0.067 0.933 24 H 0.032 0.968 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.026 0.974 34 H 0.070 0.930 35 H 0.339 0.661 36 H 0.075 0.925 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.048 -8.204 4.507 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.044 4.044 10 C -0.090 4.090 11 N -0.206 5.206 12 C -0.105 4.105 13 C -0.086 4.086 14 C -0.114 4.114 15 C -0.129 4.129 16 C -0.154 4.154 17 C -0.071 4.071 18 N -0.318 5.318 19 C -0.058 4.058 20 H 0.072 0.928 21 H 0.032 0.968 22 H 0.037 0.963 23 H 0.086 0.914 24 H 0.050 0.950 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.157 0.843 36 H 0.093 0.907 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 18.756 -7.861 3.279 20.600 hybrid contribution 0.284 0.871 1.548 1.798 sum 19.040 -6.991 4.827 20.849 Atomic orbital electron populations 1.69916 1.06309 1.26874 1.51270 1.24999 0.94705 0.99158 0.94502 0.86750 0.80288 0.83492 0.78598 1.20222 1.21485 1.19028 1.21105 0.89473 0.94486 1.50864 0.91143 1.19497 0.96530 0.91710 0.96635 1.22593 0.85900 1.00438 1.00080 1.68554 1.11388 1.11549 1.29061 1.23747 0.95915 0.92437 0.98409 1.22033 0.95366 0.96132 0.95093 1.23838 0.96081 0.98436 0.93093 1.21271 0.93643 0.96799 1.01150 1.21600 0.99534 0.97495 0.96789 1.21893 0.90279 0.98741 0.96153 1.60272 1.14825 1.21901 1.34792 1.21916 0.97189 0.90950 0.95760 0.92755 0.96825 0.96316 0.91413 0.95009 0.90108 0.91677 0.91266 0.90020 0.90399 0.92398 0.91793 0.91015 0.95557 0.91192 0.84306 0.90657 0.95156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.39 13.96 55.43 0.77 -27.62 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 22.35 27.47 -169.99 -4.67 17.68 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 7 C -0.52 -15.26 9.66 -34.44 -0.33 -15.59 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.15 4.10 -27.88 -0.11 -0.26 16 10 C 0.04 0.80 4.76 -3.82 -0.02 0.78 16 11 N -0.48 -8.69 6.11 -240.47 -1.47 -10.16 16 12 C 0.02 0.36 6.99 -2.96 -0.02 0.34 16 13 C -0.09 -1.12 0.86 -154.43 -0.13 -1.25 16 14 C 0.02 0.24 6.24 -2.97 -0.02 0.22 16 15 C -0.09 -1.08 5.12 -26.71 -0.14 -1.22 16 16 C -0.12 -1.17 6.04 -26.56 -0.16 -1.33 16 17 C 0.06 0.54 6.48 -3.85 -0.02 0.52 16 18 N -0.69 -6.96 6.86 -113.93 -0.78 -7.74 16 19 C 0.07 0.81 5.72 -3.94 -0.02 0.79 16 20 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 21 H 0.01 0.34 6.60 -51.93 -0.34 0.00 16 22 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 23 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 24 H 0.03 0.67 7.70 -51.93 -0.40 0.27 16 25 H 0.08 1.17 7.66 -51.93 -0.40 0.78 16 26 H 0.07 0.99 7.70 -51.93 -0.40 0.59 16 27 H 0.07 1.13 7.73 -51.93 -0.40 0.72 16 28 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 29 H 0.08 1.02 8.01 -51.93 -0.42 0.61 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.78 7.69 -51.93 -0.40 0.38 16 33 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.34 2.79 8.90 -39.29 -0.35 2.44 16 36 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 37 H 0.03 0.33 8.14 -51.92 -0.42 -0.09 16 LS Contribution 287.45 15.07 4.33 4.33 Total: -1.00 -31.11 287.45 -9.35 -40.46 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.46 Total: -1.86 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -1.08 Total: -15.09 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -1.48 Total: -45.52 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.11 -9.35 -40.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709971802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.256 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds