Wall clock time and date at job start Mon Mar 30 2020 03:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00135 * 2 1 4 4 H 1.48499 * 109.47134 * 269.99634 * 3 2 1 5 5 H 1.48497 * 109.46613 * 29.99906 * 3 2 1 6 6 H 1.48505 * 109.46899 * 149.99794 * 3 2 1 7 7 C 1.37882 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99751 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99983 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.47061 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46869 * 180.02562 * 10 9 7 12 12 C 1.48043 * 110.99464 * 170.00331 * 11 10 9 13 13 C 1.53460 * 86.02083 * 222.72138 * 12 11 10 14 14 C 1.48039 * 111.00138 * 70.53804 * 11 10 9 15 15 C 1.52740 * 113.62610 * 269.01106 * 13 12 11 16 16 C 1.53304 * 108.87443 * 282.41056 * 15 13 12 17 17 C 1.53025 * 109.19562 * 304.57077 * 16 15 13 18 18 N 1.46836 * 109.75264 * 60.99542 * 17 16 15 19 19 C 1.47022 * 111.17146 * 296.48046 * 18 17 16 20 20 H 0.96998 * 119.99879 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46938 * 60.00481 * 9 7 2 22 22 H 1.08996 * 109.47574 * 299.99958 * 9 7 2 23 23 H 1.09001 * 109.46915 * 60.00389 * 10 9 7 24 24 H 1.08996 * 109.46829 * 300.00337 * 10 9 7 25 25 H 1.09001 * 113.78597 * 108.44399 * 12 11 10 26 26 H 1.08998 * 113.89202 * 337.00788 * 12 11 10 27 27 H 1.09007 * 113.78723 * 23.00153 * 14 11 10 28 28 H 1.09000 * 113.78843 * 251.55762 * 14 11 10 29 29 H 1.08996 * 109.56730 * 42.22711 * 15 13 12 30 30 H 1.08998 * 109.56855 * 162.59429 * 15 13 12 31 31 H 1.09000 * 109.51627 * 184.65230 * 16 15 13 32 32 H 1.08999 * 109.51621 * 64.48561 * 16 15 13 33 33 H 1.08999 * 109.42727 * 300.90923 * 17 16 15 34 34 H 1.09000 * 109.42704 * 181.07993 * 17 16 15 35 35 H 1.00900 * 110.99838 * 172.40205 * 18 17 16 36 36 H 1.08994 * 109.50473 * 179.25671 * 19 18 17 37 37 H 1.09012 * 109.50088 * 299.32796 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6366 0.0010 11 7 5.4906 -2.6365 0.0022 12 6 6.0209 -3.9978 0.2420 13 6 7.0319 -3.3230 1.1787 14 6 6.0200 -2.1765 1.3059 15 6 8.3321 -2.9185 0.4868 16 6 9.2042 -4.1656 0.3015 17 6 9.4159 -4.8378 1.6598 18 7 8.1212 -5.2486 2.2174 19 6 7.2632 -4.0843 2.4813 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8752 -0.6804 -0.8888 23 1 3.6586 -3.1502 -0.8893 24 1 3.6578 -3.1506 0.8907 25 1 6.4737 -4.4545 -0.6380 26 1 5.3221 -4.6600 0.7532 27 1 5.3198 -2.2980 2.1324 28 1 6.4722 -1.1853 1.2717 29 1 8.1072 -2.4823 -0.4865 30 1 8.8617 -2.1907 1.1015 31 1 10.1686 -3.8768 -0.1162 32 1 8.7068 -4.8605 -0.3751 33 1 9.8974 -4.1358 2.3406 34 1 10.0516 -5.7145 1.5353 35 1 8.2461 -5.8023 3.0516 36 1 6.3066 -4.4203 2.8813 37 1 7.7502 -3.4299 3.2045 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709971802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:37 Heat of formation + Delta-G solvation = -0.982185 kcal Electronic energy + Delta-G solvation = -15796.952521 eV Core-core repulsion = 13380.370865 eV Total energy + Delta-G solvation = -2416.581657 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.71005 -37.99006 -35.45944 -33.47653 -32.58206 -30.56573 -27.19739 -27.13070 -24.99455 -24.01301 -22.32309 -21.36992 -19.13900 -19.00676 -17.42571 -16.64254 -16.42820 -16.11399 -15.60747 -15.32138 -14.98947 -14.78343 -14.48671 -14.14751 -13.74502 -13.58521 -13.30583 -12.98115 -12.78526 -12.50557 -11.99523 -11.94984 -11.77925 -11.62260 -11.45945 -11.32149 -11.19408 -10.93399 -10.79709 -9.68645 -9.30886 -8.32844 -6.37538 1.34212 1.35196 1.48141 2.33905 3.02312 3.06703 3.12804 3.63823 3.74761 4.02015 4.14563 4.20438 4.26620 4.39100 4.49316 4.56645 4.61774 4.63902 4.69916 4.78276 4.80271 4.90385 4.91092 5.00503 5.09073 5.21312 5.27304 5.34386 5.45517 5.48653 5.58404 5.61291 6.08151 6.15876 6.26355 6.55319 6.69569 7.27471 8.83975 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.055529 B = 0.005680 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.123793 B = 4928.494740 C = 5088.380976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.250 1.250 7 C -0.536 4.536 8 H 0.031 0.969 9 C 0.003 3.997 10 C 0.050 3.950 11 N -0.495 5.495 12 C 0.025 3.975 13 C -0.069 4.069 14 C 0.008 3.992 15 C -0.090 4.090 16 C -0.113 4.113 17 C 0.059 3.941 18 N -0.694 5.694 19 C 0.076 3.924 20 H 0.268 0.732 21 H 0.018 0.982 22 H 0.016 0.984 23 H 0.056 0.944 24 H 0.027 0.973 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.033 0.967 34 H 0.086 0.914 35 H 0.352 0.648 36 H 0.070 0.930 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.810 -7.844 5.097 23.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.173 1.173 7 C -0.574 4.574 8 H 0.050 0.950 9 C -0.035 4.035 10 C -0.078 4.078 11 N -0.217 5.217 12 C -0.103 4.103 13 C -0.070 4.070 14 C -0.122 4.122 15 C -0.128 4.128 16 C -0.151 4.151 17 C -0.070 4.070 18 N -0.327 5.327 19 C -0.054 4.054 20 H 0.077 0.923 21 H 0.036 0.964 22 H 0.034 0.966 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.105 0.895 35 H 0.171 0.829 36 H 0.088 0.912 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 21.537 -7.527 3.876 23.141 hybrid contribution -0.618 0.671 1.351 1.630 sum 20.919 -6.856 5.227 22.626 Atomic orbital electron populations 1.70059 1.08240 1.28283 1.52402 1.25973 0.95605 1.03439 0.93872 0.85625 0.79359 0.78202 0.79250 1.19225 1.20551 1.17342 1.21413 0.91864 0.93256 1.50873 0.95014 1.19351 0.93555 0.94183 0.96404 1.22308 0.88367 0.97801 0.99365 1.68528 1.08622 1.13871 1.30716 1.23782 0.96254 0.91063 0.99232 1.21930 0.95062 0.94378 0.95641 1.23925 0.96810 0.99696 0.91725 1.21274 0.93275 0.97954 1.00288 1.21592 0.99852 0.96325 0.97342 1.21940 0.89967 0.99591 0.95536 1.60236 1.15335 1.21417 1.35687 1.21791 0.97544 0.91458 0.94607 0.92340 0.96407 0.96579 0.92525 0.95504 0.89589 0.91950 0.91837 0.89813 0.91920 0.91393 0.89996 0.92057 0.94856 0.89521 0.82878 0.91195 0.94215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 2 C 0.01 0.49 5.47 84.66 0.46 0.96 16 3 Si 0.95 45.75 27.47 68.60 1.88 47.64 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 6 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 7 C -0.54 -32.16 9.66 25.60 0.25 -31.91 16 8 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 9 C 0.00 0.14 4.10 29.85 0.12 0.26 16 10 C 0.05 2.14 4.76 86.31 0.41 2.55 16 11 N -0.50 -17.48 6.11 -914.70 -5.58 -23.07 16 12 C 0.03 0.73 6.99 86.23 0.60 1.33 16 13 C -0.07 -1.69 0.86 -52.06 -0.04 -1.74 16 14 C 0.01 0.24 6.24 86.23 0.54 0.78 16 15 C -0.09 -1.93 5.12 30.61 0.16 -1.77 16 16 C -0.11 -1.95 6.04 30.70 0.19 -1.77 16 17 C 0.06 0.88 6.48 86.32 0.56 1.44 16 18 N -0.69 -12.15 6.86 -514.35 -3.53 -15.68 16 19 C 0.08 1.55 5.72 86.16 0.49 2.05 16 20 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 21 H 0.02 0.87 6.60 -2.39 -0.02 0.85 16 22 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 23 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.03 1.15 7.70 -2.39 -0.02 1.13 16 25 H 0.09 2.40 7.66 -2.39 -0.02 2.38 16 26 H 0.06 1.85 7.70 -2.39 -0.02 1.83 16 27 H 0.06 2.01 7.73 -2.38 -0.02 2.00 16 28 H 0.08 2.51 8.09 -2.39 -0.02 2.49 16 29 H 0.06 1.54 8.01 -2.39 -0.02 1.52 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.20 7.69 -2.39 -0.02 1.18 16 33 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.35 4.78 8.90 -89.69 -0.80 3.99 16 36 H 0.07 1.51 8.07 -2.39 -0.02 1.49 16 37 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 Total: -1.00 -67.00 287.45 -3.02 -70.02 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.17 Total: 9.36 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 3.73 Total: -27.82 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -8.81 Total: -99.20 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.88 Total: 47.64 kcal Total: -67.00 -3.02 -70.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709971802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.038 kcal (2) G-P(sol) polarization free energy of solvation -67.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds