Wall clock time and date at job start Mon Mar 30 2020 02:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 115.55082 * 2 1 4 4 C 1.53001 * 117.50183 * 214.29846 * 2 1 3 5 5 C 1.52997 * 117.50425 * 145.67397 * 2 1 3 6 6 C 1.52993 * 117.50382 * 215.00409 * 5 2 1 7 7 C 1.53004 * 117.49343 * 359.97438 * 5 2 1 8 8 H 1.09003 * 109.47591 * 172.51690 * 7 5 2 9 9 C 1.53091 * 109.48352 * 292.53870 * 7 5 2 10 10 C 1.53171 * 109.16602 * 177.59164 * 9 7 5 11 11 C 1.53177 * 109.03759 * 303.02541 * 10 9 7 12 12 C 1.53087 * 109.16770 * 56.97448 * 11 10 9 13 13 H 1.08998 * 109.48296 * 182.40620 * 12 11 10 14 14 C 1.50708 * 109.47895 * 62.37709 * 12 11 10 15 15 H 1.08000 * 119.99785 * 354.69691 * 14 12 11 16 16 C 1.37871 * 120.00140 * 174.69705 * 14 12 11 17 17 N 1.31518 * 119.99868 * 174.41326 * 16 14 12 18 18 Si 1.86799 * 120.00306 * 354.41631 * 16 14 12 19 19 H 1.48503 * 109.47143 * 94.27985 * 18 16 14 20 20 H 1.48498 * 109.47687 * 214.28364 * 18 16 14 21 21 H 1.48507 * 109.46710 * 334.28700 * 18 16 14 22 22 O 1.42901 * 109.41652 * 302.39911 * 12 11 10 23 23 H 1.08992 * 109.47163 * 286.43263 * 1 2 3 24 24 H 1.09003 * 109.47352 * 46.43557 * 1 2 3 25 25 H 1.09005 * 109.47036 * 166.43599 * 1 2 3 26 26 H 1.08996 * 117.50043 * 145.01764 * 4 2 1 27 27 H 1.09003 * 117.49767 * 359.97438 * 4 2 1 28 28 H 1.08997 * 109.47470 * 180.08230 * 6 5 2 29 29 H 1.08999 * 109.47286 * 300.08780 * 6 5 2 30 30 H 1.09000 * 109.46879 * 60.08324 * 6 5 2 31 31 H 1.08999 * 109.52062 * 57.68705 * 9 7 5 32 32 H 1.08994 * 109.52390 * 297.50218 * 9 7 5 33 33 H 1.08998 * 109.54666 * 183.15459 * 10 9 7 34 34 H 1.09004 * 109.61685 * 62.92817 * 10 9 7 35 35 H 1.09002 * 109.52189 * 297.07162 * 11 10 9 36 36 H 1.09007 * 109.52580 * 176.88656 * 11 10 9 37 37 H 0.96999 * 119.99750 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1211 -0.7647 5 6 2.2365 -1.1207 0.7652 6 6 3.5487 -0.7754 1.4720 7 6 1.3589 -2.1554 1.4725 8 1 1.9850 -2.9594 1.8594 9 6 0.6134 -1.4867 2.6304 10 6 -0.3080 -2.5138 3.2953 11 6 -1.2623 -3.0848 2.2418 12 6 -0.4444 -3.6918 1.0990 13 1 -1.1183 -4.0615 0.3261 14 6 0.3884 -4.8314 1.6271 15 1 0.4055 -5.0422 2.6862 16 6 1.1283 -5.6050 0.7582 17 7 1.9394 -6.5279 1.2273 18 14 0.9789 -5.3422 -1.0851 19 1 2.0445 -4.4136 -1.5407 20 1 1.1247 -6.6442 -1.7843 21 1 -0.3513 -4.7597 -1.3958 22 8 0.4131 -2.6917 0.5452 23 1 -0.3633 0.2907 0.9856 24 1 -0.3634 0.7082 -0.7447 25 1 -0.3633 -0.9991 -0.2410 26 1 3.1715 -0.8754 -1.2681 27 1 1.6113 -1.8590 -1.2675 28 1 3.9373 -1.6631 1.9710 29 1 4.2746 -0.4235 0.7390 30 1 3.3691 0.0067 2.2097 31 1 0.0185 -0.6565 2.2495 32 1 1.3324 -1.1157 3.3607 33 1 -0.8834 -2.0305 4.0848 34 1 0.2896 -3.3200 3.7209 35 1 -1.8951 -2.2869 1.8531 36 1 -1.8848 -3.8568 2.6944 37 1 2.4598 -7.0724 0.6160 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714734559.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:17 Heat of formation + Delta-G solvation = -35.979839 kcal Electronic energy + Delta-G solvation = -17048.629770 eV Core-core repulsion = 14598.237749 eV Total energy + Delta-G solvation = -2450.392020 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.36460 -36.73690 -32.60400 -32.36640 -30.34137 -29.46054 -26.63650 -25.77718 -23.52224 -21.94413 -20.51487 -18.89410 -18.43058 -16.67738 -15.33392 -15.03521 -14.57503 -13.85086 -13.64361 -13.52455 -12.89230 -12.85033 -12.48751 -12.35223 -11.95484 -11.82900 -11.60691 -11.45678 -11.04248 -10.84923 -10.67922 -10.42417 -10.16143 -9.99752 -9.82426 -9.63216 -9.30036 -8.93304 -8.70093 -8.57079 -7.89384 -6.10120 -4.17300 3.41974 3.46629 3.53680 4.20892 4.49847 4.80052 5.17945 5.29465 5.34607 5.37449 5.67151 5.77537 5.81001 5.82423 5.99425 6.05497 6.14804 6.19654 6.30017 6.30691 6.33722 6.42181 6.49138 6.55305 6.58084 6.69428 6.80641 6.87671 6.88970 6.98478 7.07206 7.19519 7.42595 7.69368 8.29239 8.73685 8.93777 9.54731 11.00634 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.024282 B = 0.013711 C = 0.011656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.829520 B = 2041.679397 C = 2401.532552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 H 0.089 0.911 4 C -0.162 4.162 5 C -0.120 4.120 6 C -0.109 4.109 7 C 0.142 3.858 8 H 0.074 0.926 9 C -0.142 4.142 10 C -0.111 4.111 11 C -0.130 4.130 12 C 0.170 3.830 13 H 0.064 0.936 14 C -0.543 4.543 15 H 0.075 0.925 16 C 0.085 3.915 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.301 1.301 21 H -0.265 1.265 22 O -0.392 6.392 23 H 0.054 0.946 24 H 0.040 0.960 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.918 11.433 -0.560 11.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.163 4.163 3 H 0.107 0.893 4 C -0.199 4.199 5 C -0.120 4.120 6 C -0.166 4.166 7 C 0.084 3.916 8 H 0.092 0.908 9 C -0.180 4.180 10 C -0.149 4.149 11 C -0.167 4.167 12 C 0.114 3.886 13 H 0.081 0.919 14 C -0.580 4.580 15 H 0.093 0.907 16 C -0.119 4.119 17 N -0.531 5.531 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.228 1.228 21 H -0.190 1.190 22 O -0.312 6.312 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.815 11.360 -0.787 11.416 hybrid contribution 0.119 -0.097 -0.647 0.665 sum -0.696 11.263 -1.434 11.375 Atomic orbital electron populations 1.21642 0.93008 1.03757 1.00274 1.22267 0.95567 0.93065 1.05408 0.89312 1.23113 1.01589 1.01292 0.93908 1.21653 0.97229 0.99307 0.93793 1.21251 0.94377 1.01347 0.99638 1.20943 0.89824 0.92663 0.88163 0.90824 1.22219 0.98929 0.98675 0.98159 1.21468 0.97755 0.98521 0.97129 1.21957 0.97803 0.98987 0.98002 1.20256 0.89511 0.86591 0.92220 0.91853 1.21449 1.27617 1.12957 0.96019 0.90739 1.24995 0.93755 0.93890 0.99271 1.69962 1.25658 1.21993 1.35437 0.86553 0.79748 0.76304 0.85370 1.19836 1.22810 1.19022 1.87726 1.48603 1.56725 1.38183 0.92711 0.94051 0.89310 0.90163 0.87904 0.91862 0.92897 0.92674 0.91606 0.92862 0.94048 0.91077 0.93967 0.92303 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.66 37.16 0.32 -1.74 16 2 C -0.14 -2.30 6.05 -90.62 -0.55 -2.85 16 3 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.16 -2.87 9.24 -26.73 -0.25 -3.12 16 5 C -0.12 -2.11 2.07 -154.51 -0.32 -2.43 16 6 C -0.11 -1.64 9.82 37.15 0.36 -1.28 16 7 C 0.14 2.89 2.17 -26.68 -0.06 2.84 16 8 H 0.07 1.77 6.99 -51.93 -0.36 1.41 16 9 C -0.14 -2.55 5.24 -26.60 -0.14 -2.69 16 10 C -0.11 -2.09 5.77 -26.55 -0.15 -2.24 16 11 C -0.13 -2.59 5.60 -26.59 -0.15 -2.74 16 12 C 0.17 3.96 2.63 -27.83 -0.07 3.89 16 13 H 0.06 1.53 6.58 -51.93 -0.34 1.19 16 14 C -0.54 -14.73 7.21 -34.44 -0.25 -14.98 16 15 H 0.07 2.18 6.93 -52.49 -0.36 1.82 16 16 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 17 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 18 Si 0.89 22.50 26.71 -169.99 -4.54 17.96 16 19 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 21 H -0.27 -6.50 6.25 56.52 0.35 -6.14 16 22 O -0.39 -8.72 4.61 -35.23 -0.16 -8.88 16 23 H 0.05 0.83 5.90 -51.93 -0.31 0.52 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.09 1.62 5.53 -51.93 -0.29 1.34 16 26 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 27 H 0.10 2.08 7.17 -51.93 -0.37 1.71 16 28 H 0.06 0.99 8.01 -51.93 -0.42 0.58 16 29 H 0.05 0.72 7.90 -51.93 -0.41 0.31 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.12 4.88 -51.93 -0.25 0.86 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.49 6.75 -51.93 -0.35 1.14 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 275.67 15.07 4.15 4.15 Total: -1.00 -28.60 275.67 -7.15 -35.75 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.03 Total: 2.15 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -1.35 Total: -25.04 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.77 Total: -26.09 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.16 Total: -8.88 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.54 Total: 17.96 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.60 -7.15 -35.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714734559.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.229 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds