Wall clock time and date at job start Mon Mar 30 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 115.56257 * 2 1 4 4 C 1.53081 * 117.51301 * 214.29581 * 2 1 3 5 5 C 1.53000 * 59.98470 * 252.52461 * 4 2 1 6 6 C 1.52997 * 117.49518 * 252.50089 * 5 4 2 7 7 C 1.53000 * 117.50062 * 107.50097 * 5 4 2 8 8 H 1.09005 * 109.47913 * 351.22999 * 7 5 4 9 9 C 1.53087 * 109.48006 * 111.25371 * 7 5 4 10 10 C 1.53175 * 109.16483 * 177.59277 * 9 7 5 11 11 C 1.53181 * 109.03389 * 303.01712 * 10 9 7 12 12 C 1.53090 * 109.16121 * 56.98175 * 11 10 9 13 13 H 1.09005 * 109.48366 * 62.38670 * 12 11 10 14 14 C 1.50706 * 109.48160 * 182.40633 * 12 11 10 15 15 H 1.08000 * 119.99302 * 0.02562 * 14 12 11 16 16 C 1.37871 * 120.00436 * 179.72546 * 14 12 11 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47050 * 59.99579 * 18 16 14 20 20 H 1.48496 * 109.47289 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46492 * 299.99554 * 18 16 14 22 22 O 1.42900 * 109.47791 * 231.19675 * 7 5 4 23 23 H 1.09001 * 109.47220 * 274.31199 * 1 2 3 24 24 H 1.08997 * 109.46599 * 34.31311 * 1 2 3 25 25 H 1.08999 * 109.47068 * 154.30993 * 1 2 3 26 26 H 1.08995 * 117.49207 * 145.03260 * 4 2 1 27 27 H 1.09004 * 117.51200 * 0.02562 * 4 2 1 28 28 H 1.08999 * 109.47105 * 248.74304 * 6 5 4 29 29 H 1.08998 * 109.47520 * 8.74836 * 6 5 4 30 30 H 1.09005 * 109.46860 * 128.74814 * 6 5 4 31 31 H 1.08998 * 109.52467 * 57.68417 * 9 7 5 32 32 H 1.08999 * 109.57408 * 297.53204 * 9 7 5 33 33 H 1.08996 * 109.54579 * 183.15517 * 10 9 7 34 34 H 1.08995 * 109.54662 * 62.88362 * 10 9 7 35 35 H 1.08999 * 109.52150 * 297.07518 * 11 10 9 36 36 H 1.09002 * 109.56979 * 176.91462 * 11 10 9 37 37 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2372 -1.1216 -0.7650 5 6 2.2365 -1.1211 0.7650 6 6 3.5487 -0.7758 1.4718 7 6 1.3588 -2.1562 1.4715 8 1 0.7280 -2.6590 0.7383 9 6 2.2482 -3.1867 2.1721 10 6 1.3637 -4.1841 2.9264 11 6 0.4747 -3.4183 3.9111 12 6 -0.3461 -2.3789 3.1433 13 1 -0.9996 -2.8847 2.4324 14 6 -1.1799 -1.5811 4.1126 15 1 -1.1294 -1.7935 5.1703 16 6 -2.0025 -0.5761 3.6498 17 7 -2.0591 -0.3133 2.3624 18 14 -3.0355 0.4132 4.8513 19 1 -2.1450 1.0973 5.8231 20 1 -3.8262 1.4261 4.1071 21 1 -3.9559 -0.4971 5.5790 22 8 0.5362 -1.5022 2.4397 23 1 -0.3634 0.0773 1.0248 24 1 -0.3632 0.8488 -0.5793 25 1 -0.3633 -0.9261 -0.4455 26 1 3.1723 -0.8757 -1.2680 27 1 1.6124 -1.8593 -1.2686 28 1 3.9373 -1.6637 1.9706 29 1 4.2746 -0.4238 0.7389 30 1 3.3691 0.0061 2.2098 31 1 2.9079 -2.6797 2.8762 32 1 2.8456 -3.7175 1.4309 33 1 1.9918 -4.8874 3.4733 34 1 0.7389 -4.7266 2.2170 35 1 1.0986 -2.9161 4.6504 36 1 -0.1971 -4.1142 4.4137 37 1 -2.6376 0.3940 2.0367 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714734560.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:19 Heat of formation + Delta-G solvation = -39.027212 kcal Electronic energy + Delta-G solvation = -16723.883043 eV Core-core repulsion = 14273.358879 eV Total energy + Delta-G solvation = -2450.524164 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.99617 -36.63041 -32.88691 -32.21152 -30.34774 -28.75712 -26.25060 -25.55100 -23.57339 -21.88341 -20.32877 -19.33269 -17.96887 -16.41924 -14.96181 -14.68559 -14.49969 -14.22451 -14.04928 -13.44030 -12.89063 -12.54350 -12.14774 -12.05487 -11.63350 -11.43296 -11.34507 -11.11990 -10.88421 -10.74874 -10.62980 -10.45709 -10.33047 -10.13629 -9.79272 -9.43813 -9.30852 -8.96715 -8.68143 -8.28790 -7.72508 -5.96832 -4.09476 3.33987 3.38708 3.41527 4.24716 4.44806 5.03563 5.27044 5.30480 5.45106 5.54212 5.61033 5.76232 5.79850 6.02725 6.04448 6.12501 6.17905 6.25103 6.36083 6.38765 6.43148 6.51855 6.57598 6.65657 6.76364 6.84151 6.90498 6.92135 6.98547 7.01394 7.09235 7.56496 7.82031 8.05625 8.35867 8.83582 9.22017 9.60711 11.08497 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.026070 B = 0.011247 C = 0.008748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.785249 B = 2489.061967 C = 3200.081866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.124 4.124 3 H 0.089 0.911 4 C -0.184 4.184 5 C -0.113 4.113 6 C -0.114 4.114 7 C 0.127 3.873 8 H 0.037 0.963 9 C -0.146 4.146 10 C -0.121 4.121 11 C -0.144 4.144 12 C 0.218 3.782 13 H 0.011 0.989 14 C -0.523 4.523 15 H 0.061 0.939 16 C 0.080 3.920 17 N -0.857 5.857 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.278 1.278 22 O -0.344 6.344 23 H 0.133 0.867 24 H 0.031 0.969 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.396 -2.463 -3.511 8.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.142 4.142 3 H 0.107 0.893 4 C -0.221 4.221 5 C -0.113 4.113 6 C -0.170 4.170 7 C 0.068 3.932 8 H 0.055 0.945 9 C -0.183 4.183 10 C -0.159 4.159 11 C -0.182 4.182 12 C 0.163 3.837 13 H 0.029 0.971 14 C -0.560 4.560 15 H 0.079 0.921 16 C -0.126 4.126 17 N -0.493 5.493 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.203 1.203 22 O -0.263 6.263 23 H 0.151 0.849 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.312 -2.154 -3.612 8.435 hybrid contribution -0.433 0.227 0.409 0.638 sum 6.879 -1.927 -3.203 7.829 Atomic orbital electron populations 1.21701 0.90678 0.98998 1.07612 1.22345 0.96898 0.92781 1.02165 0.89274 1.23309 1.02117 1.03142 0.93556 1.21438 0.97381 1.00942 0.91548 1.21397 0.94291 1.01654 0.99707 1.21154 0.90433 0.90393 0.91270 0.94469 1.22272 0.98717 0.97774 0.99586 1.21625 0.98153 0.97488 0.98607 1.22256 0.98559 0.98998 0.98359 1.19669 0.86216 0.87840 0.89996 0.97116 1.20973 1.22410 1.19509 0.93112 0.92087 1.25013 0.96002 0.96514 0.95023 1.69865 1.36907 1.30155 1.12397 0.86708 0.80243 0.79935 0.81313 1.20227 1.21243 1.20312 1.88358 1.52139 1.34598 1.51188 0.84940 0.95034 0.94145 0.89801 0.89498 0.91888 0.93594 0.92177 0.91376 0.92852 0.93351 0.92915 0.92613 0.92724 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.05 37.16 0.34 -2.49 16 2 C -0.12 -2.31 6.11 -90.57 -0.55 -2.86 16 3 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 4 C -0.18 -3.00 9.47 -26.69 -0.25 -3.25 16 5 C -0.11 -2.07 2.15 -154.51 -0.33 -2.41 16 6 C -0.11 -1.82 9.49 37.16 0.35 -1.47 16 7 C 0.13 2.62 2.08 -26.69 -0.06 2.56 16 8 H 0.04 0.82 7.77 -51.93 -0.40 0.41 16 9 C -0.15 -2.62 4.53 -26.60 -0.12 -2.74 16 10 C -0.12 -2.20 6.03 -26.55 -0.16 -2.36 16 11 C -0.14 -3.08 5.36 -26.59 -0.14 -3.22 16 12 C 0.22 5.57 2.50 -27.83 -0.07 5.50 16 13 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 14 C -0.52 -14.44 8.80 -34.44 -0.30 -14.75 16 15 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 16 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 17 N -0.86 -23.84 10.56 55.43 0.59 -23.26 16 18 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 O -0.34 -8.59 7.59 -35.23 -0.27 -8.86 16 23 H 0.13 3.31 4.32 -51.93 -0.22 3.08 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.86 7.77 -51.93 -0.40 0.46 16 26 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 27 H 0.09 1.41 7.96 -51.93 -0.41 1.00 16 28 H 0.06 0.95 5.54 -51.93 -0.29 0.67 16 29 H 0.05 0.63 7.90 -51.93 -0.41 0.22 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.22 6.29 -51.93 -0.33 0.89 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 284.88 15.07 4.29 4.29 Total: -1.00 -27.77 284.88 -8.04 -35.81 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.23 Total: 1.33 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -1.40 Total: -25.40 kcal Atomic # 7 Polarization: -23.84 SS G_CDS: 0.59 Total: -23.26 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.27 Total: -8.86 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.77 -8.04 -35.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714734560.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.216 kcal (2) G-P(sol) polarization free energy of solvation -27.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds