Wall clock time and date at job start Mon Mar 30 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 115.56257 * 2 1 4 4 C 1.53081 * 117.51301 * 214.29581 * 2 1 3 5 5 C 1.53000 * 59.98470 * 252.52461 * 4 2 1 6 6 C 1.52997 * 117.49518 * 252.50089 * 5 4 2 7 7 C 1.53000 * 117.50062 * 107.50097 * 5 4 2 8 8 H 1.09005 * 109.47913 * 351.22999 * 7 5 4 9 9 C 1.53087 * 109.48006 * 111.25371 * 7 5 4 10 10 C 1.53175 * 109.16483 * 177.59277 * 9 7 5 11 11 C 1.53181 * 109.03389 * 303.01712 * 10 9 7 12 12 C 1.53090 * 109.16121 * 56.98175 * 11 10 9 13 13 H 1.09005 * 109.48366 * 62.38670 * 12 11 10 14 14 C 1.50706 * 109.48160 * 182.40633 * 12 11 10 15 15 H 1.08000 * 119.99302 * 0.02562 * 14 12 11 16 16 C 1.37871 * 120.00436 * 179.72546 * 14 12 11 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47050 * 59.99579 * 18 16 14 20 20 H 1.48496 * 109.47289 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46492 * 299.99554 * 18 16 14 22 22 O 1.42900 * 109.47791 * 231.19675 * 7 5 4 23 23 H 1.09001 * 109.47220 * 274.31199 * 1 2 3 24 24 H 1.08997 * 109.46599 * 34.31311 * 1 2 3 25 25 H 1.08999 * 109.47068 * 154.30993 * 1 2 3 26 26 H 1.08995 * 117.49207 * 145.03260 * 4 2 1 27 27 H 1.09004 * 117.51200 * 0.02562 * 4 2 1 28 28 H 1.08999 * 109.47105 * 248.74304 * 6 5 4 29 29 H 1.08998 * 109.47520 * 8.74836 * 6 5 4 30 30 H 1.09005 * 109.46860 * 128.74814 * 6 5 4 31 31 H 1.08998 * 109.52467 * 57.68417 * 9 7 5 32 32 H 1.08999 * 109.57408 * 297.53204 * 9 7 5 33 33 H 1.08996 * 109.54579 * 183.15517 * 10 9 7 34 34 H 1.08995 * 109.54662 * 62.88362 * 10 9 7 35 35 H 1.08999 * 109.52150 * 297.07518 * 11 10 9 36 36 H 1.09002 * 109.56979 * 176.91462 * 11 10 9 37 37 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2372 -1.1216 -0.7650 5 6 2.2365 -1.1211 0.7650 6 6 3.5487 -0.7758 1.4718 7 6 1.3588 -2.1562 1.4715 8 1 0.7280 -2.6590 0.7383 9 6 2.2482 -3.1867 2.1721 10 6 1.3637 -4.1841 2.9264 11 6 0.4747 -3.4183 3.9111 12 6 -0.3461 -2.3789 3.1433 13 1 -0.9996 -2.8847 2.4324 14 6 -1.1799 -1.5811 4.1126 15 1 -1.1294 -1.7935 5.1703 16 6 -2.0025 -0.5761 3.6498 17 7 -2.0591 -0.3133 2.3624 18 14 -3.0355 0.4132 4.8513 19 1 -2.1450 1.0973 5.8231 20 1 -3.8262 1.4261 4.1071 21 1 -3.9559 -0.4971 5.5790 22 8 0.5362 -1.5022 2.4397 23 1 -0.3634 0.0773 1.0248 24 1 -0.3632 0.8488 -0.5793 25 1 -0.3633 -0.9261 -0.4455 26 1 3.1723 -0.8757 -1.2680 27 1 1.6124 -1.8593 -1.2686 28 1 3.9373 -1.6637 1.9706 29 1 4.2746 -0.4238 0.7389 30 1 3.3691 0.0061 2.2098 31 1 2.9079 -2.6797 2.8762 32 1 2.8456 -3.7175 1.4309 33 1 1.9918 -4.8874 3.4733 34 1 0.7389 -4.7266 2.2170 35 1 1.0986 -2.9161 4.6504 36 1 -0.1971 -4.1142 4.4137 37 1 -2.6376 0.3940 2.0367 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714734560.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:19 Heat of formation + Delta-G solvation = -53.358781 kcal Electronic energy + Delta-G solvation = -16724.504507 eV Core-core repulsion = 14273.358879 eV Total energy + Delta-G solvation = -2451.145628 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.57427 -38.23782 -34.80752 -33.99331 -32.04136 -30.35070 -27.71497 -27.42338 -25.23102 -23.64922 -21.77672 -20.99539 -19.54446 -18.44101 -16.67690 -16.48676 -16.20794 -15.80831 -15.57710 -15.03871 -14.63116 -14.07724 -13.89543 -13.57731 -13.14031 -12.92583 -12.89287 -12.83423 -12.72614 -12.48925 -12.34000 -12.09781 -12.01600 -11.67145 -11.60926 -11.10065 -10.92900 -10.67502 -10.49124 -10.10460 -9.50467 -8.04339 -6.25511 1.43153 1.45129 1.52080 2.44178 2.76807 3.20720 3.64190 3.86730 3.97787 4.11472 4.12982 4.28503 4.30205 4.45221 4.59471 4.60790 4.66394 4.87069 4.91298 4.94753 5.04295 5.08515 5.12561 5.14932 5.18102 5.21324 5.24720 5.34467 5.38244 5.45398 5.53360 5.66643 5.81022 6.14166 6.34523 6.74552 7.33261 7.49575 8.98988 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.026070 B = 0.011247 C = 0.008748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.785249 B = 2489.061967 C = 3200.081866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 H 0.103 0.897 4 C -0.152 4.152 5 C -0.127 4.127 6 C -0.108 4.108 7 C 0.118 3.882 8 H 0.014 0.986 9 C -0.139 4.139 10 C -0.117 4.117 11 C -0.138 4.138 12 C 0.218 3.782 13 H -0.028 1.028 14 C -0.553 4.553 15 H 0.058 0.942 16 C 0.032 3.968 17 N -0.876 5.876 18 Si 0.954 3.046 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.270 1.270 22 O -0.367 6.367 23 H 0.096 0.904 24 H 0.040 0.960 25 H 0.023 0.977 26 H 0.119 0.881 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.342 -2.688 -3.713 10.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 H 0.121 0.879 4 C -0.189 4.189 5 C -0.127 4.127 6 C -0.165 4.165 7 C 0.060 3.940 8 H 0.032 0.968 9 C -0.176 4.176 10 C -0.154 4.154 11 C -0.176 4.176 12 C 0.162 3.838 13 H -0.010 1.010 14 C -0.590 4.590 15 H 0.076 0.924 16 C -0.171 4.171 17 N -0.512 5.512 18 Si 0.779 3.221 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.195 1.195 22 O -0.286 6.286 23 H 0.115 0.885 24 H 0.059 0.941 25 H 0.043 0.957 26 H 0.137 0.863 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.264 -2.390 -3.815 10.300 hybrid contribution -1.070 0.286 0.415 1.182 sum 8.194 -2.105 -3.401 9.118 Atomic orbital electron populations 1.21500 0.93168 0.98507 1.05217 1.22330 0.95136 0.94253 1.04613 0.87928 1.23346 1.02729 1.00803 0.92038 1.21560 0.97924 1.00144 0.93078 1.21380 0.93471 1.01698 0.99932 1.21370 0.90439 0.91842 0.90361 0.96824 1.22221 0.98273 0.97041 1.00101 1.21614 0.98055 0.97701 0.98079 1.22117 0.98624 0.98248 0.98577 1.19474 0.86644 0.88372 0.89300 1.01005 1.21327 1.23826 1.20374 0.93462 0.92365 1.25775 0.97133 0.97485 0.96699 1.70030 1.37157 1.30303 1.13753 0.85711 0.78700 0.78496 0.79192 1.20027 1.20792 1.19522 1.88273 1.52620 1.35523 1.52229 0.88548 0.94122 0.95743 0.86296 0.89800 0.90814 0.90740 0.93809 0.90877 0.89834 0.89976 0.93086 0.92966 0.92453 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 9.05 71.98 0.65 -4.86 16 2 C -0.15 -5.28 6.11 -10.76 -0.07 -5.34 16 3 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 4 C -0.15 -4.54 9.47 30.62 0.29 -4.25 16 5 C -0.13 -4.44 2.15 -52.18 -0.11 -4.56 16 6 C -0.11 -3.15 9.49 71.98 0.68 -2.47 16 7 C 0.12 4.87 2.08 30.62 0.06 4.93 16 8 H 0.01 0.62 7.77 -2.38 -0.02 0.60 16 9 C -0.14 -4.68 4.53 30.68 0.14 -4.54 16 10 C -0.12 -4.05 6.03 30.71 0.19 -3.86 16 11 C -0.14 -5.90 5.36 30.68 0.16 -5.73 16 12 C 0.22 11.52 2.50 29.88 0.07 11.59 16 13 H -0.03 -1.62 8.14 -2.38 -0.02 -1.63 16 14 C -0.55 -31.50 8.80 25.60 0.23 -31.28 16 15 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 16 C 0.03 1.83 5.40 84.65 0.46 2.28 16 17 N -0.88 -50.59 10.56 21.45 0.23 -50.36 16 18 Si 0.95 44.13 29.54 68.60 2.03 46.16 16 19 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 O -0.37 -18.84 7.59 -148.98 -1.13 -19.97 16 23 H 0.10 5.01 4.32 -2.39 -0.01 5.00 16 24 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.02 1.07 7.77 -2.39 -0.02 1.05 16 26 H 0.12 2.76 8.05 -2.39 -0.02 2.74 16 27 H 0.08 2.56 7.96 -2.38 -0.02 2.54 16 28 H 0.07 1.97 5.54 -2.39 -0.01 1.96 16 29 H 0.07 1.74 7.90 -2.39 -0.02 1.72 16 30 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.07 2.41 6.29 -2.39 -0.02 2.40 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -62.00 284.88 4.90 -57.11 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.02 Total: 15.16 kcal Atomic # 6 Polarization: -50.85 SS G_CDS: 2.76 Total: -48.09 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.23 Total: -50.36 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -1.13 Total: -19.97 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -62.00 4.90 -57.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714734560.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.748 kcal (2) G-P(sol) polarization free energy of solvation -62.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds