Wall clock time and date at job start Mon Mar 30 2020 02:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 115.56003 * 2 1 4 4 C 1.52997 * 117.50147 * 214.30884 * 2 1 3 5 5 C 1.53003 * 60.00260 * 252.51205 * 4 2 1 6 6 C 1.52995 * 117.49874 * 252.49238 * 5 4 2 7 7 C 1.52997 * 117.49984 * 107.48864 * 5 4 2 8 8 H 1.09002 * 109.48352 * 231.37117 * 7 5 4 9 9 C 1.53095 * 109.48718 * 111.34126 * 7 5 4 10 10 C 1.53183 * 109.15859 * 182.40100 * 9 7 5 11 11 C 1.53181 * 109.03389 * 56.98355 * 10 9 7 12 12 C 1.53092 * 109.16368 * 303.01668 * 11 10 9 13 13 H 1.09001 * 109.48772 * 177.60323 * 12 11 10 14 14 C 1.50706 * 109.47790 * 297.62686 * 12 11 10 15 15 H 1.08005 * 120.00138 * 359.94462 * 14 12 11 16 16 C 1.37871 * 119.99722 * 179.97438 * 14 12 11 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00073 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46845 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47399 * 119.99815 * 18 16 14 21 21 H 1.48498 * 109.47295 * 240.00422 * 18 16 14 22 22 O 1.42903 * 109.41691 * 57.60973 * 12 11 10 23 23 H 1.08998 * 109.46945 * 274.30980 * 1 2 3 24 24 H 1.08995 * 109.46898 * 34.31646 * 1 2 3 25 25 H 1.09006 * 109.46349 * 154.31290 * 1 2 3 26 26 H 1.08996 * 117.49791 * 145.01789 * 4 2 1 27 27 H 1.09004 * 117.49893 * 0.02562 * 4 2 1 28 28 H 1.09000 * 109.46993 * 248.74369 * 6 5 4 29 29 H 1.09002 * 109.47117 * 8.73709 * 6 5 4 30 30 H 1.08998 * 109.47535 * 128.74682 * 6 5 4 31 31 H 1.09000 * 109.52313 * 302.30477 * 9 7 5 32 32 H 1.08999 * 109.52303 * 62.49877 * 9 7 5 33 33 H 1.09001 * 109.53744 * 176.84477 * 10 9 7 34 34 H 1.08993 * 109.54792 * 297.11275 * 10 9 7 35 35 H 1.09006 * 109.51993 * 183.11144 * 11 10 9 36 36 H 1.08998 * 109.52495 * 62.92464 * 11 10 9 37 37 H 0.97000 * 119.99651 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2366 -1.1210 -0.7649 5 6 2.2365 -1.1210 0.7651 6 6 3.5491 -0.7763 1.4716 7 6 1.3589 -2.1562 1.4715 8 1 0.7296 -1.6571 2.2084 9 6 2.2482 -3.1860 2.1732 10 6 1.3633 -4.2518 2.8272 11 6 0.4720 -4.8873 1.7556 12 6 -0.3486 -3.7917 1.0700 13 1 -0.9534 -4.2325 0.2776 14 6 -1.2495 -3.1313 2.0816 15 1 -1.2390 -3.4602 3.1103 16 6 -2.0876 -2.1075 1.6937 17 7 -2.1012 -1.7077 0.4409 18 14 -3.2049 -1.2893 2.9473 19 1 -3.0012 -1.9185 4.2770 20 1 -2.8804 0.1575 3.0300 21 1 -4.6208 -1.4561 2.5319 22 8 0.5341 -2.8173 0.5100 23 1 -0.3633 0.0772 1.0247 24 1 -0.3633 0.8488 -0.5793 25 1 -0.3632 -0.9262 -0.4455 26 1 3.1716 -0.8751 -1.2682 27 1 1.6113 -1.8583 -1.2686 28 1 3.9377 -1.6645 1.9698 29 1 4.2748 -0.4244 0.7384 30 1 3.3701 0.0053 2.2099 31 1 2.9062 -3.6569 1.4430 32 1 2.8464 -2.6902 2.9377 33 1 1.9912 -5.0186 3.2809 34 1 0.7402 -3.7891 3.5924 35 1 -0.2000 -5.6081 2.2215 36 1 1.0942 -5.3925 1.0170 37 1 -1.5218 -2.1333 -0.2103 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714734561.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:21 Heat of formation + Delta-G solvation = -51.080920 kcal Electronic energy + Delta-G solvation = -17169.999064 eV Core-core repulsion = 14718.952211 eV Total energy + Delta-G solvation = -2451.046852 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.79659 -38.27310 -34.87695 -34.06062 -31.88866 -30.27564 -27.72788 -27.04820 -25.12486 -23.98591 -21.85138 -21.12193 -19.51807 -18.54745 -16.78805 -16.51223 -15.93149 -15.76517 -15.35239 -15.26122 -14.70285 -14.26511 -13.67451 -13.50392 -13.26095 -13.22965 -12.96334 -12.71582 -12.66001 -12.50882 -12.10680 -12.03691 -11.88287 -11.79000 -11.46329 -11.29105 -10.60745 -10.45010 -10.29288 -10.19085 -9.55521 -8.42032 -6.19957 1.52241 1.59079 1.74190 2.59032 2.89142 3.22204 3.49057 3.85318 3.95276 4.12130 4.16182 4.22615 4.33146 4.53934 4.56773 4.66270 4.76693 4.87428 4.91494 4.93640 4.98823 5.04766 5.15416 5.19774 5.21964 5.25130 5.29946 5.37004 5.46351 5.51481 5.57100 5.64455 5.97518 6.06281 6.33295 6.76014 7.04238 7.64039 8.92501 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.023748 B = 0.014154 C = 0.010864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.784123 B = 1977.733980 C = 2576.782719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.152 4.152 3 H 0.111 0.889 4 C -0.154 4.154 5 C -0.129 4.129 6 C -0.108 4.108 7 C 0.144 3.856 8 H 0.026 0.974 9 C -0.133 4.133 10 C -0.106 4.106 11 C -0.129 4.129 12 C 0.190 3.810 13 H 0.018 0.982 14 C -0.634 4.634 15 H 0.039 0.961 16 C -0.006 4.006 17 N -0.899 5.899 18 Si 1.100 2.900 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.283 1.283 22 O -0.396 6.396 23 H 0.025 0.975 24 H 0.036 0.964 25 H 0.072 0.928 26 H 0.109 0.891 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.125 0.956 2.247 10.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.170 4.170 3 H 0.128 0.872 4 C -0.191 4.191 5 C -0.129 4.129 6 C -0.165 4.165 7 C 0.086 3.914 8 H 0.044 0.956 9 C -0.170 4.170 10 C -0.143 4.143 11 C -0.167 4.167 12 C 0.134 3.866 13 H 0.036 0.964 14 C -0.672 4.672 15 H 0.057 0.943 16 C -0.210 4.210 17 N -0.536 5.536 18 Si 0.925 3.075 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.209 1.209 22 O -0.316 6.316 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.127 0.873 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.001 2.139 2.222 9.515 hybrid contribution 0.460 -1.389 -0.057 1.465 sum 9.461 0.750 2.165 9.735 Atomic orbital electron populations 1.21379 0.92527 1.01999 0.99891 1.22503 0.95195 0.94056 1.05289 0.87152 1.23034 1.01968 1.00698 0.93389 1.21774 0.98188 0.98848 0.94075 1.21406 0.92740 1.02097 1.00236 1.20853 0.89363 0.91095 0.90091 0.95562 1.22127 0.97890 0.97108 0.99882 1.21434 0.97408 0.98018 0.97488 1.21940 0.98362 0.98078 0.98331 1.19713 0.87652 0.86832 0.92418 0.96427 1.22469 1.25947 1.22617 0.96129 0.94302 1.26633 0.98327 0.95791 1.00296 1.70803 1.38560 1.41384 1.02883 0.83146 0.75102 0.75610 0.73627 1.20520 1.21119 1.20882 1.87763 1.53552 1.55344 1.34908 0.95627 0.94470 0.90905 0.87296 0.90731 0.90698 0.90800 0.92056 0.91691 0.89843 0.90907 0.93353 0.92823 0.93038 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.59 7.78 71.98 0.56 -4.03 16 2 C -0.15 -5.66 6.13 -10.79 -0.07 -5.72 16 3 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 4 C -0.15 -5.40 9.18 30.59 0.28 -5.12 16 5 C -0.13 -4.58 2.47 -52.18 -0.13 -4.71 16 6 C -0.11 -2.86 9.50 71.98 0.68 -2.17 16 7 C 0.14 6.09 1.97 30.63 0.06 6.15 16 8 H 0.03 1.33 6.96 -2.39 -0.02 1.31 16 9 C -0.13 -4.67 4.31 30.69 0.13 -4.54 16 10 C -0.11 -3.94 5.78 30.72 0.18 -3.77 16 11 C -0.13 -5.42 5.59 30.69 0.17 -5.25 16 12 C 0.19 9.63 2.76 29.88 0.08 9.71 16 13 H 0.02 1.00 8.01 -2.39 -0.02 0.98 16 14 C -0.63 -34.59 6.59 25.60 0.17 -34.42 16 15 H 0.04 2.15 6.87 -2.91 -0.02 2.13 16 16 C -0.01 -0.34 5.28 84.65 0.45 0.11 16 17 N -0.90 -52.07 10.89 21.45 0.23 -51.83 16 18 Si 1.10 50.59 29.90 68.60 2.05 52.64 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 O -0.40 -19.26 5.78 -148.98 -0.86 -20.12 16 23 H 0.02 1.27 7.66 -2.39 -0.02 1.26 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.07 3.75 3.73 -2.38 -0.01 3.74 16 26 H 0.11 3.07 8.05 -2.39 -0.02 3.05 16 27 H 0.07 3.06 6.97 -2.39 -0.02 3.04 16 28 H 0.07 1.82 5.65 -2.39 -0.01 1.81 16 29 H 0.07 1.64 7.90 -2.39 -0.02 1.62 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.08 2.51 6.63 -2.39 -0.02 2.49 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.05 1.99 6.85 -2.39 -0.02 1.97 16 35 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.27 16.22 4.97 -92.71 -0.46 15.76 16 Total: -1.00 -59.84 272.47 5.33 -54.50 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 1.34 Total: 18.58 kcal Atomic # 6 Polarization: -56.33 SS G_CDS: 2.57 Total: -53.76 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.23 Total: -51.83 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.86 Total: -20.12 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 2.05 Total: 52.64 kcal Total: -59.84 5.33 -54.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714734561.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.420 kcal (2) G-P(sol) polarization free energy of solvation -59.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds