Wall clock time and date at job start Mon Mar 30 2020 02:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 115.55765 * 2 1 4 4 C 1.53067 * 117.51316 * 214.29451 * 2 1 3 5 5 C 1.52994 * 117.49828 * 145.68359 * 2 1 3 6 6 C 1.53004 * 117.49966 * 215.00234 * 5 2 1 7 7 C 1.52998 * 117.49979 * 0.02562 * 5 2 1 8 8 H 1.08997 * 110.55102 * 302.78568 * 7 5 2 9 9 C 1.54997 * 110.61826 * 179.90888 * 7 5 2 10 10 C 1.54806 * 102.09416 * 204.31357 * 9 7 5 11 11 C 1.54102 * 104.18560 * 20.88200 * 10 9 7 12 12 C 1.52995 * 109.87830 * 242.60288 * 11 10 9 13 13 C 1.50702 * 110.00376 * 121.52185 * 11 10 9 14 14 H 1.08000 * 119.99966 * 0.63827 * 13 11 10 15 15 C 1.37875 * 120.00034 * 180.63630 * 13 11 10 16 16 N 1.31514 * 119.99999 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99905 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47168 * 90.00330 * 17 15 13 19 19 H 1.48508 * 109.47140 * 210.00430 * 17 15 13 20 20 H 1.48501 * 109.47199 * 330.00082 * 17 15 13 21 21 O 1.43741 * 107.29201 * 2.03047 * 11 10 9 22 22 H 1.09002 * 109.47182 * 274.31279 * 1 2 3 23 23 H 1.08997 * 109.47023 * 34.31453 * 1 2 3 24 24 H 1.09003 * 109.46966 * 154.31214 * 1 2 3 25 25 H 1.09007 * 117.49369 * 145.03746 * 4 2 1 26 26 H 1.08999 * 117.53617 * 359.97438 * 4 2 1 27 27 H 1.09000 * 109.46942 * 180.09211 * 6 5 2 28 28 H 1.09000 * 109.47118 * 300.09379 * 6 5 2 29 29 H 1.08996 * 109.47012 * 60.09005 * 6 5 2 30 30 H 1.09001 * 110.90754 * 322.51968 * 9 7 5 31 31 H 1.09008 * 110.90669 * 86.11843 * 9 7 5 32 32 H 1.09002 * 110.48626 * 139.55745 * 10 9 7 33 33 H 1.09002 * 110.48892 * 262.20435 * 10 9 7 34 34 H 1.09000 * 109.47353 * 179.28782 * 12 11 10 35 35 H 1.08996 * 109.47221 * 299.28496 * 12 11 10 36 36 H 1.09000 * 109.47171 * 59.28998 * 12 11 10 37 37 H 0.97000 * 119.99616 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2371 -1.1215 -0.7649 5 6 2.2364 -1.1209 0.7651 6 6 3.5487 -0.7756 1.4720 7 6 1.3588 -2.1563 1.4711 8 1 0.6863 -1.6699 2.1776 9 6 2.2341 -3.2141 2.1904 10 6 1.2782 -4.4295 2.2651 11 6 0.2347 -4.1575 1.1642 12 6 -1.1537 -4.0071 1.7892 13 6 0.2286 -5.2889 0.1688 14 1 0.8917 -6.1306 0.3039 15 6 -0.6237 -5.2496 -0.9143 16 7 -1.4308 -4.2245 -1.0791 17 14 -0.6318 -6.6525 -2.1477 18 1 -1.6182 -7.6784 -1.7240 19 1 -1.0041 -6.1314 -3.4876 20 1 0.7205 -7.2627 -2.2123 21 8 0.6119 -2.9339 0.5110 22 1 -0.3634 0.0773 1.0248 23 1 -0.3633 0.8488 -0.5793 24 1 -0.3633 -0.9261 -0.4455 25 1 3.1724 -0.8756 -1.2679 26 1 1.6127 -1.8599 -1.2679 27 1 3.9373 -1.6636 1.9707 28 1 4.2746 -0.4236 0.7390 29 1 3.3692 0.0062 2.2098 30 1 3.1200 -3.4515 1.6015 31 1 2.5115 -2.8756 3.1888 32 1 1.8187 -5.3533 2.0585 33 1 0.7980 -4.4778 3.2424 34 1 -1.8842 -3.8025 1.0066 35 1 -1.4220 -4.9294 2.3044 36 1 -1.1440 -3.1824 2.5018 37 1 -2.0301 -4.1967 -1.8413 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714736049.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:29 Heat of formation + Delta-G solvation = -32.245023 kcal Electronic energy + Delta-G solvation = -16761.130665 eV Core-core repulsion = 14310.900599 eV Total energy + Delta-G solvation = -2450.230066 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.10310 -36.75481 -32.72795 -31.13090 -30.06055 -28.67109 -26.48348 -25.45861 -24.52551 -21.42880 -20.24122 -19.25979 -17.92198 -16.55496 -15.08966 -14.73589 -14.43630 -14.23052 -13.29987 -13.07798 -12.67737 -12.56139 -12.27902 -11.89890 -11.72402 -11.49341 -11.22218 -11.06835 -10.84408 -10.73441 -10.63837 -10.43091 -10.34444 -10.02495 -9.76600 -9.51720 -9.12553 -9.04615 -8.81706 -8.45324 -7.85027 -5.91810 -4.06215 3.32215 3.39586 3.42746 4.28799 4.45628 4.94256 5.23182 5.33766 5.44306 5.47756 5.73919 5.81725 5.87600 5.90108 6.05789 6.12637 6.26748 6.31531 6.41706 6.44100 6.47997 6.55166 6.61815 6.70347 6.77311 6.86992 6.95193 6.95923 7.04483 7.19721 7.23235 7.37027 7.82386 8.16674 8.42588 8.66625 9.08870 9.63421 11.10479 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.028995 B = 0.010362 C = 0.009380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.456455 B = 2701.598818 C = 2984.205135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.149 4.149 3 H 0.088 0.912 4 C -0.155 4.155 5 C -0.123 4.123 6 C -0.112 4.112 7 C 0.106 3.894 8 H 0.048 0.952 9 C -0.143 4.143 10 C -0.143 4.143 11 C 0.226 3.774 12 C -0.148 4.148 13 C -0.520 4.520 14 H 0.059 0.941 15 C 0.081 3.919 16 N -0.860 5.860 17 Si 0.886 3.114 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 O -0.333 6.333 22 H 0.048 0.952 23 H 0.043 0.957 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.115 0.885 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.032 0.968 36 H 0.008 0.992 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.497 5.911 4.056 9.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.167 4.167 3 H 0.107 0.893 4 C -0.192 4.192 5 C -0.123 4.123 6 C -0.169 4.169 7 C 0.047 3.953 8 H 0.065 0.935 9 C -0.181 4.181 10 C -0.181 4.181 11 C 0.188 3.812 12 C -0.206 4.206 13 C -0.557 4.557 14 H 0.077 0.923 15 C -0.124 4.124 16 N -0.496 5.496 17 Si 0.714 3.286 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 O -0.252 6.252 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.104 0.896 25 H 0.096 0.904 26 H 0.133 0.867 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.051 0.949 36 H 0.027 0.973 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.294 6.040 3.719 8.851 hybrid contribution 0.077 -0.754 -0.411 0.862 sum 5.371 5.286 3.309 8.230 Atomic orbital electron populations 1.21334 0.92551 1.02901 1.01006 1.22341 0.95742 0.93037 1.05556 0.89346 1.23171 1.01534 1.01147 0.93305 1.21539 0.97121 0.99270 0.94416 1.21356 0.94667 1.01237 0.99664 1.22130 0.91174 0.91143 0.90861 0.93460 1.23074 0.99126 0.96768 0.99124 1.23074 0.97906 0.97674 0.99447 1.19608 0.88988 0.83526 0.89029 1.22164 1.01918 0.96981 0.99512 1.21062 1.21890 1.03407 1.09380 0.92301 1.24988 0.94831 0.95242 0.97381 1.69956 1.22263 1.28721 1.28677 0.86707 0.78317 0.82589 0.80972 1.20748 1.21201 1.19936 1.89235 1.71401 1.30550 1.34028 0.93332 0.93785 0.89630 0.90427 0.86683 0.91739 0.92986 0.92945 0.91440 0.92682 0.91846 0.93212 0.89242 0.94857 0.97295 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 9.13 37.16 0.34 -1.84 16 2 C -0.15 -2.53 6.13 -90.59 -0.56 -3.08 16 3 H 0.09 1.32 8.14 -51.92 -0.42 0.90 16 4 C -0.15 -2.85 9.19 -26.70 -0.25 -3.09 16 5 C -0.12 -2.18 2.45 -154.51 -0.38 -2.56 16 6 C -0.11 -1.61 9.63 37.16 0.36 -1.25 16 7 C 0.11 2.14 2.74 -25.68 -0.07 2.07 16 8 H 0.05 0.98 7.91 -51.93 -0.41 0.56 16 9 C -0.14 -2.70 5.06 -24.73 -0.13 -2.82 16 10 C -0.14 -3.05 6.27 -25.20 -0.16 -3.20 16 11 C 0.23 5.64 0.74 -91.20 -0.07 5.57 16 12 C -0.15 -3.62 8.38 37.15 0.31 -3.31 16 13 C -0.52 -14.28 8.26 -34.44 -0.28 -14.57 16 14 H 0.06 1.61 7.34 -52.49 -0.39 1.22 16 15 C 0.08 2.22 5.26 -17.82 -0.09 2.12 16 16 N -0.86 -24.28 10.94 55.43 0.61 -23.68 16 17 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 O -0.33 -8.20 7.27 -35.23 -0.26 -8.46 16 22 H 0.05 0.85 7.94 -51.93 -0.41 0.44 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.08 1.86 6.84 -51.93 -0.36 1.51 16 25 H 0.08 1.25 8.05 -51.93 -0.42 0.84 16 26 H 0.11 2.55 6.99 -51.93 -0.36 2.19 16 27 H 0.06 0.90 5.95 -51.93 -0.31 0.59 16 28 H 0.05 0.68 7.90 -51.93 -0.41 0.27 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.27 7.39 -51.93 -0.38 0.88 16 31 H 0.05 0.89 8.09 -51.92 -0.42 0.47 16 32 H 0.06 1.35 7.41 -51.93 -0.38 0.97 16 33 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 34 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 286.87 15.07 4.32 4.32 Total: -1.00 -28.06 286.87 -7.53 -35.59 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.21 Total: 1.95 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -0.97 Total: -25.95 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.61 Total: -23.68 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.26 Total: -8.46 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.06 -7.53 -35.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714736049.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.347 kcal (2) G-P(sol) polarization free energy of solvation -28.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds