Wall clock time and date at job start Mon Mar 30 2020 02:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 115.55765 * 2 1 4 4 C 1.53067 * 117.51316 * 214.29451 * 2 1 3 5 5 C 1.52994 * 117.49828 * 145.68359 * 2 1 3 6 6 C 1.53004 * 117.49966 * 215.00234 * 5 2 1 7 7 C 1.52998 * 117.49979 * 0.02562 * 5 2 1 8 8 H 1.08997 * 110.55102 * 302.78568 * 7 5 2 9 9 C 1.54997 * 110.61826 * 179.90888 * 7 5 2 10 10 C 1.54806 * 102.09416 * 204.31357 * 9 7 5 11 11 C 1.54102 * 104.18560 * 20.88200 * 10 9 7 12 12 C 1.52995 * 109.87830 * 242.60288 * 11 10 9 13 13 C 1.50702 * 110.00376 * 121.52185 * 11 10 9 14 14 H 1.08000 * 119.99966 * 0.63827 * 13 11 10 15 15 C 1.37875 * 120.00034 * 180.63630 * 13 11 10 16 16 N 1.31514 * 119.99999 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99905 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47168 * 90.00330 * 17 15 13 19 19 H 1.48508 * 109.47140 * 210.00430 * 17 15 13 20 20 H 1.48501 * 109.47199 * 330.00082 * 17 15 13 21 21 O 1.43741 * 107.29201 * 2.03047 * 11 10 9 22 22 H 1.09002 * 109.47182 * 274.31279 * 1 2 3 23 23 H 1.08997 * 109.47023 * 34.31453 * 1 2 3 24 24 H 1.09003 * 109.46966 * 154.31214 * 1 2 3 25 25 H 1.09007 * 117.49369 * 145.03746 * 4 2 1 26 26 H 1.08999 * 117.53617 * 359.97438 * 4 2 1 27 27 H 1.09000 * 109.46942 * 180.09211 * 6 5 2 28 28 H 1.09000 * 109.47118 * 300.09379 * 6 5 2 29 29 H 1.08996 * 109.47012 * 60.09005 * 6 5 2 30 30 H 1.09001 * 110.90754 * 322.51968 * 9 7 5 31 31 H 1.09008 * 110.90669 * 86.11843 * 9 7 5 32 32 H 1.09002 * 110.48626 * 139.55745 * 10 9 7 33 33 H 1.09002 * 110.48892 * 262.20435 * 10 9 7 34 34 H 1.09000 * 109.47353 * 179.28782 * 12 11 10 35 35 H 1.08996 * 109.47221 * 299.28496 * 12 11 10 36 36 H 1.09000 * 109.47171 * 59.28998 * 12 11 10 37 37 H 0.97000 * 119.99616 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2371 -1.1215 -0.7649 5 6 2.2364 -1.1209 0.7651 6 6 3.5487 -0.7756 1.4720 7 6 1.3588 -2.1563 1.4711 8 1 0.6863 -1.6699 2.1776 9 6 2.2341 -3.2141 2.1904 10 6 1.2782 -4.4295 2.2651 11 6 0.2347 -4.1575 1.1642 12 6 -1.1537 -4.0071 1.7892 13 6 0.2286 -5.2889 0.1688 14 1 0.8917 -6.1306 0.3039 15 6 -0.6237 -5.2496 -0.9143 16 7 -1.4308 -4.2245 -1.0791 17 14 -0.6318 -6.6525 -2.1477 18 1 -1.6182 -7.6784 -1.7240 19 1 -1.0041 -6.1314 -3.4876 20 1 0.7205 -7.2627 -2.2123 21 8 0.6119 -2.9339 0.5110 22 1 -0.3634 0.0773 1.0248 23 1 -0.3633 0.8488 -0.5793 24 1 -0.3633 -0.9261 -0.4455 25 1 3.1724 -0.8756 -1.2679 26 1 1.6127 -1.8599 -1.2679 27 1 3.9373 -1.6636 1.9707 28 1 4.2746 -0.4236 0.7390 29 1 3.3692 0.0062 2.2098 30 1 3.1200 -3.4515 1.6015 31 1 2.5115 -2.8756 3.1888 32 1 1.8187 -5.3533 2.0585 33 1 0.7980 -4.4778 3.2424 34 1 -1.8842 -3.8025 1.0066 35 1 -1.4220 -4.9294 2.3044 36 1 -1.1440 -3.1824 2.5018 37 1 -2.0301 -4.1967 -1.8413 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714736049.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:28 Heat of formation + Delta-G solvation = -46.853684 kcal Electronic energy + Delta-G solvation = -16761.764144 eV Core-core repulsion = 14310.900599 eV Total energy + Delta-G solvation = -2450.863545 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.69518 -38.33345 -34.73757 -32.78515 -31.79150 -30.20049 -27.88531 -27.39352 -26.29518 -23.01591 -21.67693 -21.13244 -19.41646 -18.49102 -16.79204 -16.51850 -16.08284 -15.73234 -15.04914 -14.78743 -14.26284 -14.05433 -13.74058 -13.62101 -13.20857 -12.99861 -12.91205 -12.81185 -12.59422 -12.50822 -12.25651 -12.17296 -11.95747 -11.76851 -11.54719 -11.21631 -10.90245 -10.55623 -10.54432 -10.25432 -9.68701 -8.00367 -6.21533 1.39920 1.41701 1.50659 2.44164 2.89837 3.13169 3.62052 3.83253 4.00071 4.04762 4.19671 4.30446 4.41549 4.55952 4.66937 4.76788 4.83310 4.89256 4.94721 5.00481 5.04569 5.06277 5.07658 5.12048 5.17679 5.22076 5.34318 5.37683 5.43199 5.48542 5.57589 5.70009 5.72166 6.15163 6.40436 6.67895 7.17137 7.52072 9.00219 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.028995 B = 0.010362 C = 0.009380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.456455 B = 2701.598818 C = 2984.205135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.138 4.138 3 H 0.123 0.877 4 C -0.168 4.168 5 C -0.124 4.124 6 C -0.107 4.107 7 C 0.096 3.904 8 H 0.043 0.957 9 C -0.131 4.131 10 C -0.142 4.142 11 C 0.211 3.789 12 C -0.139 4.139 13 C -0.541 4.541 14 H 0.052 0.948 15 C 0.035 3.965 16 N -0.884 5.884 17 Si 0.945 3.055 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.272 1.272 21 O -0.359 6.359 22 H 0.049 0.951 23 H 0.065 0.935 24 H 0.038 0.962 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.035 0.965 36 H 0.023 0.977 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.197 6.901 4.988 11.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.156 4.156 3 H 0.141 0.859 4 C -0.205 4.205 5 C -0.124 4.124 6 C -0.163 4.163 7 C 0.038 3.962 8 H 0.060 0.940 9 C -0.169 4.169 10 C -0.180 4.180 11 C 0.173 3.827 12 C -0.197 4.197 13 C -0.578 4.578 14 H 0.070 0.930 15 C -0.168 4.168 16 N -0.521 5.521 17 Si 0.771 3.229 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.196 1.196 21 O -0.278 6.278 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.057 0.943 25 H 0.120 0.880 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.042 0.958 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.999 7.025 4.661 10.957 hybrid contribution -0.492 -1.041 -0.689 1.342 sum 6.507 5.985 3.972 9.692 Atomic orbital electron populations 1.21240 0.93850 1.01312 1.00945 1.22448 0.94776 0.94145 1.04233 0.85946 1.23030 1.02142 1.01204 0.94095 1.21686 0.98397 0.98619 0.93686 1.21366 0.92678 1.02090 1.00203 1.22353 0.91430 0.91840 0.90596 0.93950 1.23030 0.98093 0.94890 1.00847 1.22998 0.97579 0.98598 0.98799 1.19689 0.90109 0.83354 0.89581 1.22030 1.01322 0.97564 0.98785 1.21417 1.21753 1.04347 1.10327 0.92958 1.25676 0.94661 0.97367 0.99070 1.70103 1.22814 1.30218 1.29005 0.85784 0.78380 0.80021 0.78716 1.19951 1.21198 1.19633 1.89203 1.72270 1.30786 1.35574 0.93190 0.91653 0.94287 0.87984 0.91479 0.91383 0.91374 0.90987 0.91398 0.89199 0.92436 0.91691 0.92311 0.94592 0.95783 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.15 9.13 71.98 0.66 -3.49 16 2 C -0.14 -4.41 6.13 -10.77 -0.07 -4.48 16 3 H 0.12 3.14 8.14 -2.38 -0.02 3.12 16 4 C -0.17 -6.06 9.19 30.62 0.28 -5.77 16 5 C -0.12 -4.11 2.45 -52.18 -0.13 -4.24 16 6 C -0.11 -2.61 9.63 71.98 0.69 -1.92 16 7 C 0.10 3.79 2.74 31.28 0.09 3.88 16 8 H 0.04 1.70 7.91 -2.39 -0.02 1.68 16 9 C -0.13 -4.64 5.06 31.89 0.16 -4.48 16 10 C -0.14 -5.90 6.27 31.58 0.20 -5.70 16 11 C 0.21 10.64 0.74 -11.17 -0.01 10.63 16 12 C -0.14 -6.93 8.38 71.98 0.60 -6.33 16 13 C -0.54 -30.35 8.26 25.60 0.21 -30.13 16 14 H 0.05 2.91 7.34 -2.91 -0.02 2.88 16 15 C 0.03 1.95 5.26 84.65 0.45 2.40 16 16 N -0.88 -51.79 10.94 21.45 0.23 -51.56 16 17 Si 0.94 44.49 29.54 68.60 2.03 46.51 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 O -0.36 -18.05 7.27 -148.98 -1.08 -19.14 16 22 H 0.05 1.73 7.94 -2.39 -0.02 1.71 16 23 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.04 1.75 6.84 -2.39 -0.02 1.74 16 25 H 0.10 3.11 8.05 -2.38 -0.02 3.09 16 26 H 0.07 3.10 6.99 -2.39 -0.02 3.08 16 27 H 0.07 1.62 5.95 -2.39 -0.01 1.61 16 28 H 0.07 1.47 7.90 -2.39 -0.02 1.45 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 2.40 7.39 -2.39 -0.02 2.38 16 31 H 0.09 2.56 8.09 -2.38 -0.02 2.54 16 32 H 0.06 2.41 7.41 -2.39 -0.02 2.40 16 33 H 0.06 2.45 7.70 -2.39 -0.02 2.43 16 34 H 0.06 3.28 6.06 -2.39 -0.01 3.27 16 35 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.02 1.06 8.13 -2.39 -0.02 1.04 16 37 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -62.22 286.87 5.33 -56.89 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 1.02 Total: 16.93 kcal Atomic # 6 Polarization: -52.77 SS G_CDS: 3.13 Total: -49.64 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.23 Total: -51.56 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -1.08 Total: -19.14 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -62.22 5.33 -56.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714736049.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.034 kcal (2) G-P(sol) polarization free energy of solvation -62.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds