Wall clock time and date at job start Mon Mar 30 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 115.55155 * 2 1 4 4 C 1.52997 * 117.49927 * 214.29471 * 2 1 3 5 5 C 1.53000 * 60.00132 * 252.51172 * 4 2 1 6 6 C 1.53007 * 117.51380 * 252.52292 * 5 4 2 7 7 C 1.52996 * 117.50318 * 107.49184 * 5 4 2 8 8 H 1.09001 * 110.67378 * 234.34991 * 7 5 4 9 9 C 1.54993 * 110.62008 * 111.37701 * 7 5 4 10 10 C 1.54815 * 102.09024 * 204.47565 * 9 7 5 11 11 C 1.54103 * 104.18943 * 20.88295 * 10 9 7 12 12 C 1.53001 * 109.87802 * 121.59885 * 11 10 9 13 13 C 1.50701 * 109.87827 * 242.60739 * 11 10 9 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 11 10 15 15 C 1.37871 * 119.99694 * 180.27812 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 O 1.43745 * 107.29278 * 2.02694 * 11 10 9 22 22 H 1.09001 * 109.46926 * 274.33006 * 1 2 3 23 23 H 1.08998 * 109.46735 * 34.32809 * 1 2 3 24 24 H 1.08994 * 109.47126 * 154.32818 * 1 2 3 25 25 H 1.08999 * 117.50197 * 145.02160 * 4 2 1 26 26 H 1.09000 * 117.50187 * 359.97438 * 4 2 1 27 27 H 1.09006 * 109.46600 * 248.70796 * 6 5 4 28 28 H 1.08998 * 109.47626 * 8.70973 * 6 5 4 29 29 H 1.08998 * 109.47175 * 128.72000 * 6 5 4 30 30 H 1.08994 * 110.90506 * 86.28241 * 9 7 5 31 31 H 1.09001 * 110.90739 * 322.67219 * 9 7 5 32 32 H 1.09001 * 110.48744 * 262.20428 * 10 9 7 33 33 H 1.09001 * 110.48177 * 139.55746 * 10 9 7 34 34 H 1.09001 * 109.46862 * 180.30187 * 12 11 10 35 35 H 1.08990 * 109.47255 * 300.30858 * 12 11 10 36 36 H 1.09005 * 109.46761 * 60.31228 * 12 11 10 37 37 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1212 -0.7647 5 6 2.2364 -1.1208 0.7653 6 6 3.5488 -0.7753 1.4721 7 6 1.3589 -2.1558 1.4721 8 1 0.6835 -1.6707 2.1769 9 6 2.2341 -3.2121 2.1935 10 6 1.2801 -4.4293 2.2652 11 6 0.2391 -4.1589 1.1617 12 6 0.2386 -5.3098 0.1536 13 6 -1.1304 -4.0133 1.7737 14 1 -1.2565 -4.1034 2.8425 15 6 -2.2230 -3.7713 0.9684 16 7 -2.0695 -3.6619 -0.3331 17 14 -3.9217 -3.5985 1.7262 18 1 -4.1694 -2.1744 2.0667 19 1 -4.9461 -4.0607 0.7556 20 1 -4.0000 -4.4229 2.9589 21 8 0.6157 -2.9344 0.5097 22 1 -0.3633 0.0776 1.0247 23 1 -0.3633 0.8487 -0.5795 24 1 -0.3633 -0.9262 -0.4452 25 1 3.1715 -0.8755 -1.2680 26 1 1.6113 -1.8591 -1.2674 27 1 3.9373 -1.6631 1.9711 28 1 4.2747 -0.4236 0.7390 29 1 3.3692 0.0067 2.2099 30 1 2.5082 -2.8734 3.1925 31 1 3.1220 -3.4479 1.6068 32 1 0.7974 -4.4787 3.2413 33 1 1.8229 -5.3520 2.0598 34 1 -0.4959 -5.1092 -0.6265 35 1 1.2282 -5.4012 -0.2939 36 1 -0.0171 -6.2389 0.6631 37 1 -2.8383 -3.4920 -0.8996 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714736054.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:31 Heat of formation + Delta-G solvation = -32.148939 kcal Electronic energy + Delta-G solvation = -16814.047825 eV Core-core repulsion = 14363.821925 eV Total energy + Delta-G solvation = -2450.225900 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.05543 -36.72669 -32.67994 -31.10537 -30.10192 -28.74152 -26.42359 -25.18772 -24.57960 -21.51016 -20.23919 -19.25321 -17.82587 -16.41283 -15.15895 -14.82361 -14.40914 -14.29223 -13.35326 -12.96634 -12.61367 -12.33298 -12.23358 -12.06555 -11.55772 -11.38060 -11.18260 -10.94484 -10.86705 -10.78632 -10.71299 -10.41100 -10.36447 -10.09230 -9.76759 -9.45006 -9.16118 -9.06046 -8.76276 -8.42342 -7.78729 -5.89033 -4.05561 3.31863 3.39062 3.41630 4.29976 4.45783 4.99059 5.24585 5.34195 5.43953 5.47007 5.74016 5.83425 5.91599 5.94942 6.07981 6.13886 6.25614 6.33886 6.44140 6.47986 6.59135 6.63959 6.66967 6.73511 6.83165 6.84410 6.96067 7.01463 7.05891 7.18960 7.30738 7.55508 7.84128 8.12494 8.42465 8.71035 9.05496 9.65905 11.11630 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.028208 B = 0.011196 C = 0.009541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.371546 B = 2500.289768 C = 2933.926167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.145 4.145 3 H 0.088 0.912 4 C -0.159 4.159 5 C -0.125 4.125 6 C -0.112 4.112 7 C 0.122 3.878 8 H 0.057 0.943 9 C -0.146 4.146 10 C -0.144 4.144 11 C 0.225 3.775 12 C -0.129 4.129 13 C -0.539 4.539 14 H 0.053 0.947 15 C 0.084 3.916 16 N -0.859 5.859 17 Si 0.882 3.118 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 O -0.345 6.345 22 H 0.050 0.950 23 H 0.040 0.960 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.013 0.987 36 H 0.035 0.965 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.666 4.050 1.646 8.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.163 4.163 3 H 0.106 0.894 4 C -0.195 4.195 5 C -0.125 4.125 6 C -0.169 4.169 7 C 0.063 3.937 8 H 0.075 0.925 9 C -0.183 4.183 10 C -0.182 4.182 11 C 0.188 3.812 12 C -0.187 4.187 13 C -0.577 4.577 14 H 0.071 0.929 15 C -0.121 4.121 16 N -0.496 5.496 17 Si 0.709 3.291 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 O -0.264 6.264 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.106 0.894 25 H 0.095 0.905 26 H 0.129 0.871 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.032 0.968 36 H 0.054 0.946 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.513 4.119 1.248 8.658 hybrid contribution -0.912 0.112 0.719 1.167 sum 6.601 4.231 1.967 8.083 Atomic orbital electron populations 1.21331 0.92203 1.02849 1.01386 1.22327 0.95935 0.92922 1.05131 0.89391 1.23135 1.01474 1.01508 0.93420 1.21614 0.97169 0.99646 0.94108 1.21356 0.94604 1.01282 0.99673 1.21978 0.90500 0.90709 0.90533 0.92476 1.23087 0.98605 0.97216 0.99438 1.23088 0.97267 0.96508 1.01328 1.19581 0.91093 0.82732 0.87839 1.21772 0.99313 0.96389 1.01209 1.21444 0.91885 1.51244 0.93114 0.92852 1.24934 0.98389 0.94072 0.94728 1.69941 1.29736 1.46857 1.03084 0.86789 0.84745 0.78361 0.79166 1.20689 1.21257 1.20040 1.88981 1.71978 1.30836 1.34597 0.93054 0.94046 0.89421 0.90452 0.87111 0.91789 0.93049 0.92842 0.92467 0.91961 0.92057 0.93097 0.89142 0.96841 0.94585 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 9.12 37.16 0.34 -1.98 16 2 C -0.14 -2.51 6.13 -90.62 -0.56 -3.07 16 3 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.16 -2.82 9.19 -26.73 -0.25 -3.07 16 5 C -0.13 -2.22 2.45 -154.51 -0.38 -2.59 16 6 C -0.11 -1.60 9.63 37.16 0.36 -1.24 16 7 C 0.12 2.53 2.73 -25.68 -0.07 2.46 16 8 H 0.06 1.29 7.92 -51.93 -0.41 0.88 16 9 C -0.15 -2.74 5.06 -24.72 -0.13 -2.86 16 10 C -0.14 -3.05 6.26 -25.20 -0.16 -3.21 16 11 C 0.23 5.58 0.75 -91.20 -0.07 5.52 16 12 C -0.13 -3.16 8.44 37.16 0.31 -2.85 16 13 C -0.54 -14.64 8.19 -34.44 -0.28 -14.92 16 14 H 0.05 1.45 7.33 -52.49 -0.38 1.07 16 15 C 0.08 2.28 5.26 -17.82 -0.09 2.19 16 16 N -0.86 -24.12 10.92 55.43 0.61 -23.51 16 17 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 O -0.34 -8.44 7.32 -35.23 -0.26 -8.70 16 22 H 0.05 1.01 7.94 -51.93 -0.41 0.60 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.09 2.02 6.84 -51.93 -0.36 1.66 16 25 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 26 H 0.11 2.30 6.98 -51.93 -0.36 1.94 16 27 H 0.06 0.88 5.95 -51.93 -0.31 0.57 16 28 H 0.05 0.66 7.90 -51.93 -0.41 0.25 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 31 H 0.06 1.11 7.38 -51.93 -0.38 0.73 16 32 H 0.06 1.30 7.39 -51.93 -0.38 0.91 16 33 H 0.05 1.00 7.70 -51.93 -0.40 0.60 16 34 H 0.09 2.44 6.00 -51.93 -0.31 2.13 16 35 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 286.80 15.07 4.32 4.32 Total: -1.00 -27.79 286.80 -7.53 -35.32 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.21 Total: 2.05 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: -0.97 Total: -25.63 kcal Atomic # 7 Polarization: -24.12 SS G_CDS: 0.61 Total: -23.51 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.26 Total: -8.70 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.79 -7.53 -35.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714736054.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.173 kcal (2) G-P(sol) polarization free energy of solvation -27.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds