Wall clock time and date at job start Mon Mar 30 2020 02:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 115.56101 * 2 1 4 4 C 1.53002 * 117.49909 * 214.30848 * 2 1 3 5 5 C 1.53002 * 117.50095 * 145.68472 * 2 1 3 6 6 C 1.52999 * 117.52017 * 214.97304 * 5 2 1 7 7 C 1.53003 * 117.49642 * 0.02562 * 5 2 1 8 8 H 1.08997 * 110.55105 * 16.88490 * 7 5 2 9 9 C 1.54990 * 110.62010 * 139.93788 * 7 5 2 10 10 C 1.54809 * 102.09442 * 155.52182 * 9 7 5 11 11 C 1.54104 * 104.18854 * 339.12082 * 10 9 7 12 12 C 1.53000 * 109.87883 * 117.39143 * 11 10 9 13 13 C 1.50695 * 110.00192 * 238.47606 * 11 10 9 14 14 H 1.07996 * 120.00560 * 359.61098 * 13 11 10 15 15 C 1.37886 * 119.99491 * 179.61020 * 13 11 10 16 16 N 1.31510 * 120.00124 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99736 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47043 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47321 * 120.00263 * 17 15 13 20 20 H 1.48502 * 109.47261 * 240.00368 * 17 15 13 21 21 O 1.43751 * 107.28828 * 357.96871 * 11 10 9 22 22 H 1.09000 * 109.47747 * 274.31138 * 1 2 3 23 23 H 1.08996 * 109.47262 * 34.31417 * 1 2 3 24 24 H 1.09006 * 109.47167 * 154.31503 * 1 2 3 25 25 H 1.09005 * 117.49834 * 145.02344 * 4 2 1 26 26 H 1.08994 * 117.50492 * 0.02562 * 4 2 1 27 27 H 1.09010 * 109.46785 * 204.42619 * 6 5 2 28 28 H 1.08999 * 109.46771 * 324.42504 * 6 5 2 29 29 H 1.08996 * 109.47234 * 84.42816 * 6 5 2 30 30 H 1.09001 * 110.91301 * 273.72429 * 9 7 5 31 31 H 1.09006 * 110.90662 * 37.28893 * 9 7 5 32 32 H 1.09000 * 110.48996 * 220.44544 * 10 9 7 33 33 H 1.08999 * 110.48777 * 97.79869 * 10 9 7 34 34 H 1.09003 * 109.47336 * 300.71692 * 12 11 10 35 35 H 1.09000 * 109.46734 * 180.71695 * 12 11 10 36 36 H 1.08995 * 109.46759 * 60.71963 * 12 11 10 37 37 H 0.97001 * 119.99784 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2364 -1.1209 0.7651 6 6 3.5491 -0.7763 1.4715 7 6 1.3588 -2.1564 1.4711 8 1 0.3395 -2.1198 1.0868 9 6 1.9555 -3.5779 1.3109 10 6 1.3669 -4.3168 2.5374 11 6 0.9825 -3.1859 3.5111 12 6 -0.5286 -3.1967 3.7504 13 6 1.7096 -3.3625 4.8191 14 1 2.3779 -4.1996 4.9568 15 6 1.5216 -2.4553 5.8403 16 7 0.7075 -1.4362 5.6729 17 14 2.4224 -2.6746 7.4620 18 1 3.2717 -3.8910 7.3959 19 1 3.2774 -1.4877 7.7178 20 1 1.4345 -2.8192 8.5614 21 8 1.3717 -1.9447 2.8992 22 1 -0.3634 0.0773 1.0247 23 1 -0.3633 0.8488 -0.5793 24 1 -0.3634 -0.9262 -0.4454 25 1 3.1715 -0.8752 -1.2682 26 1 1.6113 -1.8583 -1.2686 27 1 4.1458 -1.6808 1.5907 28 1 4.1032 -0.0514 0.8752 29 1 3.3335 -0.3515 2.4519 30 1 1.6200 -4.0382 0.3816 31 1 3.0442 -3.5503 1.3583 32 1 2.1167 -4.9683 2.9863 33 1 0.4850 -4.8896 2.2506 34 1 -1.0478 -3.0606 2.8017 35 1 -0.7946 -2.3867 4.4296 36 1 -0.8199 -4.1504 4.1905 37 1 0.5750 -0.7982 6.3914 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714736059.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:33 Heat of formation + Delta-G solvation = -49.625071 kcal Electronic energy + Delta-G solvation = -16605.144436 eV Core-core repulsion = 14154.160714 eV Total energy + Delta-G solvation = -2450.983722 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.66460 -38.52419 -34.78091 -32.61363 -31.63610 -30.46448 -27.82066 -27.48340 -26.42768 -22.99082 -21.78401 -21.12700 -19.38905 -18.56399 -16.95289 -16.59173 -16.06962 -15.44210 -14.98395 -14.78476 -14.33508 -14.14578 -13.95981 -13.61941 -13.22792 -13.12088 -12.94403 -12.82775 -12.71507 -12.45082 -12.27309 -12.21870 -12.03640 -11.83513 -11.56715 -11.10519 -11.01531 -10.67331 -10.57697 -10.19196 -9.72695 -8.01579 -6.23476 1.39213 1.41484 1.52063 2.43655 2.80177 3.16145 3.61340 3.83106 3.91847 4.10052 4.14864 4.29735 4.33391 4.48264 4.61770 4.72265 4.80907 4.88619 4.90442 4.95754 4.97850 5.02475 5.05657 5.09342 5.10590 5.24309 5.29800 5.34624 5.36531 5.44870 5.47946 5.61501 5.70267 6.14485 6.38689 6.66931 7.16142 7.50703 8.99657 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.032788 B = 0.009109 C = 0.008803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.756890 B = 3073.217229 C = 3179.968481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.154 4.154 3 H 0.106 0.894 4 C -0.142 4.142 5 C -0.133 4.133 6 C -0.095 4.095 7 C 0.097 3.903 8 H 0.049 0.951 9 C -0.133 4.133 10 C -0.141 4.141 11 C 0.210 3.790 12 C -0.140 4.140 13 C -0.540 4.540 14 H 0.054 0.946 15 C 0.032 3.968 16 N -0.888 5.888 17 Si 0.948 3.052 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.278 1.278 21 O -0.369 6.369 22 H 0.035 0.965 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.024 0.976 35 H 0.058 0.942 36 H 0.037 0.963 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.730 -0.049 -11.737 11.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.172 4.172 3 H 0.125 0.875 4 C -0.178 4.178 5 C -0.134 4.134 6 C -0.152 4.152 7 C 0.039 3.961 8 H 0.067 0.933 9 C -0.170 4.170 10 C -0.179 4.179 11 C 0.172 3.828 12 C -0.198 4.198 13 C -0.578 4.578 14 H 0.072 0.928 15 C -0.171 4.171 16 N -0.526 5.526 17 Si 0.774 3.226 18 H -0.191 1.191 19 H -0.210 1.210 20 H -0.203 1.203 21 O -0.289 6.289 22 H 0.054 0.946 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.130 0.870 26 H 0.120 0.880 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.701 0.289 -11.532 11.660 hybrid contribution 0.195 -0.149 1.262 1.285 sum 1.896 0.140 -10.270 10.445 Atomic orbital electron populations 1.21307 0.93025 1.02333 1.00850 1.22524 0.95510 0.94671 1.04491 0.87547 1.23228 1.02847 1.00359 0.91407 1.21437 0.97921 1.00209 0.93790 1.21020 0.94380 1.00668 0.99156 1.22523 0.95836 0.93001 0.84723 0.93289 1.22987 1.00586 0.95544 0.97913 1.22987 1.00172 0.98652 0.96045 1.19716 0.91250 0.80925 0.90859 1.22040 0.98043 1.00782 0.98959 1.21472 1.27838 1.10618 0.97859 0.92763 1.25736 0.95290 0.94608 1.01419 1.70118 1.36169 1.13427 1.32855 0.85685 0.78762 0.78014 0.80187 1.19107 1.21029 1.20340 1.89199 1.89148 1.35314 1.15207 0.94583 0.90515 0.92241 0.86966 0.87993 0.93083 0.91176 0.94977 0.89419 0.91616 0.92351 0.91578 0.95699 0.92319 0.94385 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.32 8.75 71.98 0.63 -2.69 16 2 C -0.15 -4.41 6.12 -10.79 -0.07 -4.48 16 3 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 4 C -0.14 -3.50 9.54 30.60 0.29 -3.21 16 5 C -0.13 -4.50 1.95 -52.18 -0.10 -4.60 16 6 C -0.10 -3.33 9.22 71.98 0.66 -2.67 16 7 C 0.10 3.89 3.00 31.28 0.09 3.98 16 8 H 0.05 1.95 6.25 -2.39 -0.01 1.93 16 9 C -0.13 -4.80 6.51 31.89 0.21 -4.59 16 10 C -0.14 -5.91 6.27 31.59 0.20 -5.71 16 11 C 0.21 10.78 0.74 -11.17 -0.01 10.77 16 12 C -0.14 -7.06 8.38 71.98 0.60 -6.45 16 13 C -0.54 -30.58 8.26 25.60 0.21 -30.37 16 14 H 0.05 3.03 7.34 -2.91 -0.02 3.01 16 15 C 0.03 1.79 5.26 84.66 0.45 2.24 16 16 N -0.89 -52.86 10.93 21.45 0.23 -52.62 16 17 Si 0.95 44.66 29.54 68.60 2.03 46.68 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 O -0.37 -19.25 9.32 -148.98 -1.39 -20.64 16 22 H 0.04 1.23 8.13 -2.39 -0.02 1.21 16 23 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.06 1.56 7.31 -2.38 -0.02 1.54 16 25 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 26 H 0.10 2.29 8.05 -2.39 -0.02 2.27 16 27 H 0.05 1.78 7.37 -2.38 -0.02 1.76 16 28 H 0.07 1.97 8.11 -2.39 -0.02 1.95 16 29 H 0.03 1.35 7.86 -2.39 -0.02 1.33 16 30 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.07 2.37 7.23 -2.38 -0.02 2.36 16 32 H 0.06 2.47 7.41 -2.39 -0.02 2.45 16 33 H 0.07 2.51 7.70 -2.39 -0.02 2.49 16 34 H 0.02 1.11 8.13 -2.39 -0.02 1.09 16 35 H 0.06 3.31 6.04 -2.39 -0.01 3.30 16 36 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -63.85 291.08 5.06 -58.79 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 1.02 Total: 15.57 kcal Atomic # 6 Polarization: -50.94 SS G_CDS: 3.17 Total: -47.77 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.23 Total: -52.62 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -1.39 Total: -20.64 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -63.85 5.06 -58.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714736059.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.162 kcal (2) G-P(sol) polarization free energy of solvation -63.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds