Wall clock time and date at job start Mon Mar 30 2020 03:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86788 * 120.00409 * 2 1 4 4 H 1.48504 * 109.47561 * 239.99961 * 3 2 1 5 5 H 1.48497 * 109.47419 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47360 * 120.00166 * 3 2 1 7 7 C 1.37879 * 119.99533 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00130 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99944 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47084 * 184.90898 * 9 7 2 11 11 C 1.46822 * 111.00233 * 299.72943 * 10 9 7 12 12 C 1.52231 * 109.92381 * 185.67694 * 11 10 9 13 13 C 1.53110 * 109.28605 * 300.94441 * 12 11 10 14 14 C 1.53002 * 109.27055 * 57.43511 * 13 12 11 15 15 H 1.09002 * 109.46774 * 182.64996 * 14 13 12 16 16 C 1.53847 * 110.15865 * 62.35160 * 14 13 12 17 17 N 1.46862 * 109.70423 * 180.89104 * 16 14 13 18 18 C 1.46841 * 111.25031 * 61.55672 * 17 16 14 19 19 C 1.53041 * 109.57360 * 298.39414 * 18 17 16 20 20 C 1.46870 * 111.00212 * 64.07931 * 10 9 7 21 21 H 1.08996 * 109.58037 * 295.04418 * 20 10 9 22 22 H 0.97009 * 119.99454 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47153 * 64.91332 * 9 7 2 24 24 H 1.08991 * 109.47232 * 304.90983 * 9 7 2 25 25 H 1.09003 * 109.47327 * 306.08665 * 11 10 9 26 26 H 1.09002 * 109.46656 * 66.07814 * 11 10 9 27 27 H 1.08999 * 109.63206 * 180.90398 * 12 11 10 28 28 H 1.08996 * 109.30956 * 60.79053 * 12 11 10 29 29 H 1.08998 * 109.50340 * 297.49206 * 13 12 11 30 30 H 1.09005 * 109.50802 * 177.37328 * 13 12 11 31 31 H 1.08998 * 109.36050 * 60.82165 * 16 14 13 32 32 H 1.08997 * 109.36013 * 300.95916 * 16 14 13 33 33 H 1.00900 * 110.99797 * 297.43185 * 17 16 14 34 34 H 1.08995 * 109.45813 * 178.35732 * 18 17 16 35 35 H 1.09005 * 109.43518 * 58.40737 * 18 17 16 36 36 H 1.09003 * 109.51907 * 299.34899 * 19 18 17 37 37 H 1.08996 * 109.56725 * 179.20789 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 7 2.2009 -3.6133 0.1174 11 6 3.1450 -3.6210 -1.0071 12 6 4.0256 -4.8608 -0.9366 13 6 4.7883 -4.8646 0.3910 14 6 3.7883 -4.8128 1.5479 15 1 4.3288 -4.7679 2.4935 16 6 2.8928 -6.0637 1.5310 17 7 1.9235 -5.9936 2.6321 18 6 1.0427 -4.8270 2.4923 19 6 1.8777 -3.5454 2.5412 20 6 2.9055 -3.5702 1.4053 21 1 3.5247 -2.6745 1.4532 22 1 -0.4850 0.8402 0.0004 23 1 0.6914 -2.5957 -0.9310 24 1 0.5602 -2.5199 0.8424 25 1 2.5916 -3.6189 -1.9462 26 1 3.7776 -2.7348 -0.9563 27 1 4.7350 -4.8536 -1.7641 28 1 3.4001 -5.7512 -0.9998 29 1 5.4433 -3.9946 0.4369 30 1 5.3845 -5.7741 0.4657 31 1 3.5120 -6.9530 1.6482 32 1 2.3605 -6.1142 0.5812 33 1 2.3914 -5.9882 3.5260 34 1 0.3181 -4.8195 3.3065 35 1 0.5170 -4.8816 1.5389 36 1 2.3947 -3.4839 3.4989 37 1 1.2254 -2.6801 2.4234 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715009448.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:49 Heat of formation + Delta-G solvation = -6.580042 kcal Electronic energy + Delta-G solvation = -16853.431532 eV Core-core repulsion = 14436.607134 eV Total energy + Delta-G solvation = -2416.824398 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.72237 -35.56060 -34.01145 -32.10895 -30.32815 -29.03066 -26.67234 -24.27511 -23.35685 -22.44552 -21.20312 -20.07014 -18.06571 -16.37004 -15.40969 -15.25492 -14.76573 -14.35561 -14.04573 -13.88481 -13.35933 -12.86170 -12.51813 -11.99632 -11.87479 -11.66435 -11.30999 -11.18073 -11.03985 -10.93299 -10.80900 -10.47105 -10.27524 -10.15535 -10.04297 -9.76674 -9.60358 -9.13533 -8.42656 -7.90805 -7.09121 -6.03157 -4.12318 3.26064 3.31541 3.33712 4.38954 4.76885 4.93900 5.19454 5.23335 5.27087 5.37656 5.65200 5.69670 5.77900 5.80278 5.95118 6.07892 6.13113 6.20529 6.32976 6.33577 6.42942 6.44818 6.62321 6.67189 6.71159 6.82053 6.87172 6.93851 7.31278 7.47469 7.55314 7.82074 7.90806 8.10735 8.29955 8.35977 8.98333 9.54293 11.01061 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.032480 B = 0.009751 C = 0.008566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.855851 B = 2870.744834 C = 3268.129066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.547 4.547 8 H 0.054 0.946 9 C 0.183 3.817 10 N -0.531 5.531 11 C 0.064 3.936 12 C -0.118 4.118 13 C -0.108 4.108 14 C -0.119 4.119 15 H 0.057 0.943 16 C 0.072 3.928 17 N -0.686 5.686 18 C 0.066 3.934 19 C -0.149 4.149 20 C 0.101 3.899 21 H 0.041 0.959 22 H 0.262 0.738 23 H 0.025 0.975 24 H 0.042 0.958 25 H 0.063 0.937 26 H 0.033 0.967 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.327 0.673 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.326 -9.200 2.872 11.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.714 3.286 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.586 4.586 8 H 0.072 0.928 9 C 0.058 3.942 10 N -0.255 5.255 11 C -0.065 4.065 12 C -0.156 4.156 13 C -0.146 4.146 14 C -0.140 4.140 15 H 0.076 0.924 16 C -0.057 4.057 17 N -0.313 5.313 18 C -0.063 4.063 19 C -0.188 4.188 20 C -0.008 4.008 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.043 0.957 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.143 0.857 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.412 -9.967 2.550 11.624 hybrid contribution 1.677 2.786 0.265 3.263 sum 7.089 -7.181 2.816 10.476 Atomic orbital electron populations 1.69930 1.05913 1.26851 1.50189 1.24939 0.94744 0.98979 0.95032 0.86753 0.79736 0.83555 0.78544 1.20342 1.21187 1.20405 1.21705 0.93181 0.92185 1.51540 0.92825 1.19821 0.91136 0.85422 0.97821 1.62385 1.16804 1.46351 0.99973 1.21672 0.94269 0.95533 0.95029 1.21527 0.98137 0.99692 0.96272 1.21451 0.97208 1.00705 0.95252 1.22038 0.96438 0.97914 0.97585 0.92448 1.22120 0.92845 0.94671 0.96111 1.60764 1.23003 1.42459 1.05047 1.21908 0.94742 0.87141 1.02558 1.22295 0.99175 1.00709 0.96652 1.21294 0.93830 0.94876 0.90782 0.94132 0.92797 0.95687 0.94034 0.91807 0.94827 0.92683 0.91625 0.92720 0.92751 0.92566 0.89426 0.85732 0.92232 0.89561 0.93468 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.55 -14.79 7.72 -34.44 -0.27 -15.05 16 8 H 0.05 1.46 5.87 -52.49 -0.31 1.15 16 9 C 0.18 4.59 4.72 -4.98 -0.02 4.56 16 10 N -0.53 -10.94 3.28 -228.47 -0.75 -11.69 16 11 C 0.06 1.23 4.99 -4.26 -0.02 1.21 16 12 C -0.12 -1.82 5.73 -27.07 -0.16 -1.97 16 13 C -0.11 -1.57 5.53 -26.67 -0.15 -1.72 16 14 C -0.12 -1.86 2.63 -90.13 -0.24 -2.09 16 15 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 16 C 0.07 1.07 5.47 -3.40 -0.02 1.06 16 17 N -0.69 -10.25 6.87 -113.34 -0.78 -11.03 16 18 C 0.07 1.10 6.40 -3.83 -0.02 1.07 16 19 C -0.15 -2.73 5.13 -26.60 -0.14 -2.87 16 20 C 0.10 1.94 1.75 -67.57 -0.12 1.82 16 21 H 0.04 0.89 6.99 -51.93 -0.36 0.53 16 22 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.04 1.10 5.92 -51.93 -0.31 0.79 16 25 H 0.06 1.26 8.12 -51.93 -0.42 0.83 16 26 H 0.03 0.71 6.61 -51.93 -0.34 0.37 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.99 6.63 -51.93 -0.34 0.64 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.46 6.08 -51.93 -0.32 1.15 16 33 H 0.33 4.34 8.87 -39.29 -0.35 4.00 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.63 7.65 -51.93 -0.40 1.23 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.86 6.12 -51.93 -0.32 1.54 16 LS Contribution 272.10 15.07 4.10 4.10 Total: -1.00 -27.64 272.10 -8.94 -36.58 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.98 Total: 3.03 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -1.25 Total: -12.27 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.79 Total: -47.84 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.64 -8.94 -36.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715009448.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.003 kcal (2) G-P(sol) polarization free energy of solvation -27.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds