Wall clock time and date at job start Mon Mar 30 2020 03:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46941 * 110.99967 * 66.04644 * 10 9 7 12 12 C 1.52977 * 109.78150 * 185.33723 * 11 10 9 13 13 C 1.53216 * 109.50115 * 301.39980 * 12 11 10 14 14 C 1.52993 * 108.88630 * 57.41429 * 13 12 11 15 15 H 1.08999 * 109.49295 * 61.52049 * 14 13 12 16 16 C 1.52896 * 110.12328 * 182.03289 * 14 13 12 17 17 N 1.46941 * 109.26298 * 179.31562 * 16 14 13 18 18 C 1.46789 * 111.44769 * 298.54319 * 17 16 14 19 19 C 1.53128 * 109.75808 * 61.19882 * 18 17 16 20 20 C 1.46711 * 111.00117 * 189.87797 * 10 9 7 21 21 H 1.09003 * 109.45589 * 293.66106 * 20 10 9 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.09000 * 109.42104 * 305.43246 * 11 10 9 26 26 H 1.09005 * 109.41642 * 65.24225 * 11 10 9 27 27 H 1.09000 * 109.46778 * 61.40498 * 12 11 10 28 28 H 1.08996 * 109.46817 * 181.39533 * 12 11 10 29 29 H 1.08993 * 109.56907 * 177.23876 * 13 12 11 30 30 H 1.09003 * 109.56235 * 297.47668 * 13 12 11 31 31 H 1.09007 * 109.50850 * 299.25153 * 16 14 13 32 32 H 1.08998 * 109.50761 * 59.37919 * 16 14 13 33 33 H 1.00902 * 110.99748 * 174.26204 * 17 16 14 34 34 H 1.09003 * 109.42537 * 301.11268 * 18 17 16 35 35 H 1.09001 * 109.37546 * 181.25825 * 18 17 16 36 36 H 1.09005 * 109.53969 * 181.23509 * 19 18 17 37 37 H 1.09001 * 109.54242 * 60.97883 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.9712 -3.6541 1.2531 12 6 4.0449 -4.7406 1.1711 13 6 3.3815 -6.0964 0.9077 14 6 2.5637 -6.0053 -0.3821 15 1 3.2257 -5.7761 -1.2172 16 6 1.8476 -7.3303 -0.6456 17 7 1.0559 -7.2166 -1.8783 18 6 0.0265 -6.1768 -1.7610 19 6 0.6887 -4.8180 -1.5164 20 6 1.5217 -4.8922 -0.2355 21 1 0.8687 -5.1150 0.6084 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 3.4462 -2.6869 1.4175 26 1 2.2979 -3.8717 2.0823 27 1 4.7341 -4.5097 0.3589 28 1 4.5931 -4.7814 2.1122 29 1 4.1485 -6.8634 0.8003 30 1 2.7258 -6.3499 1.7407 31 1 2.5842 -8.1260 -0.7582 32 1 1.1877 -7.5600 0.1909 33 1 0.6465 -8.1043 -2.1281 34 1 -0.6343 -6.4133 -0.9270 35 1 -0.5536 -6.1366 -2.6830 36 1 -0.0794 -4.0522 -1.4081 37 1 1.3355 -4.5708 -2.3583 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715009449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:52 Heat of formation + Delta-G solvation = -29.573867 kcal Electronic energy + Delta-G solvation = -16365.549365 eV Core-core repulsion = 13947.727880 eV Total energy + Delta-G solvation = -2417.821485 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.90726 -37.46675 -35.48441 -34.15409 -32.02667 -30.92479 -28.80045 -25.86539 -24.72760 -24.17908 -22.00700 -21.02419 -20.61868 -18.51763 -17.40132 -16.79244 -16.08877 -15.92174 -15.72279 -15.31856 -14.78618 -14.71364 -14.37665 -13.88297 -13.69609 -13.44805 -13.18286 -12.78840 -12.64690 -12.54530 -12.23556 -12.09553 -11.98671 -11.83223 -11.55652 -11.41374 -10.91934 -10.76525 -10.55674 -9.38322 -9.00127 -8.21601 -6.31460 1.38778 1.40602 1.52453 2.38960 3.10039 3.21436 3.29266 3.77709 3.87294 4.01556 4.15776 4.25011 4.31330 4.41476 4.48438 4.50460 4.66224 4.77584 4.85076 4.90687 4.95058 4.99056 4.99985 5.09632 5.18749 5.25416 5.30643 5.33891 5.39581 5.55906 5.67154 6.04527 6.07060 6.38798 6.59392 6.69651 6.85156 7.37924 8.89579 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.035521 B = 0.008008 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.066726 B = 3495.542260 C = 4093.395150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.206 3.794 10 N -0.537 5.537 11 C 0.062 3.938 12 C -0.108 4.108 13 C -0.107 4.107 14 C -0.072 4.072 15 H 0.071 0.929 16 C 0.070 3.930 17 N -0.693 5.693 18 C 0.071 3.929 19 C -0.110 4.110 20 C 0.088 3.912 21 H 0.006 0.994 22 H 0.264 0.736 23 H -0.051 1.051 24 H 0.017 0.983 25 H 0.059 0.941 26 H 0.005 0.995 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.029 0.971 33 H 0.357 0.643 34 H 0.027 0.973 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.412 -14.893 -0.020 15.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.189 1.189 6 H -0.206 1.206 7 C -0.562 4.562 8 H 0.079 0.921 9 C 0.080 3.920 10 N -0.261 5.261 11 C -0.067 4.067 12 C -0.146 4.146 13 C -0.145 4.145 14 C -0.091 4.091 15 H 0.089 0.911 16 C -0.059 4.059 17 N -0.326 5.326 18 C -0.059 4.059 19 C -0.148 4.148 20 C -0.021 4.021 21 H 0.024 0.976 22 H 0.073 0.927 23 H -0.033 1.033 24 H 0.035 0.965 25 H 0.077 0.923 26 H 0.024 0.976 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.047 0.953 33 H 0.177 0.823 34 H 0.046 0.954 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.038 -14.294 -0.714 15.173 hybrid contribution -1.431 0.884 1.344 2.153 sum 3.607 -13.410 0.630 13.901 Atomic orbital electron populations 1.70093 1.07731 1.27856 1.51850 1.25933 0.95777 1.03214 0.94805 0.85373 0.78572 0.78191 0.78434 1.19778 1.18935 1.20572 1.21478 0.93535 0.91211 1.49973 0.92113 1.19425 0.90311 0.88956 0.93329 1.62075 1.26846 1.02654 1.34533 1.21994 0.95665 0.99753 0.89245 1.21570 0.96838 0.93755 1.02406 1.21564 0.99342 0.97327 0.96239 1.21175 0.96062 0.93256 0.98636 0.91091 1.21934 0.96841 0.96887 0.90251 1.60117 1.26893 1.10585 1.35020 1.21797 0.92564 0.90736 1.00812 1.21628 0.98620 0.97034 0.97547 1.21648 0.94428 0.90553 0.95476 0.97607 0.92704 1.03320 0.96542 0.92267 0.97642 0.91666 0.89785 0.88919 0.92453 0.88135 0.95252 0.82346 0.95433 0.89344 0.93704 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.52 -30.89 8.44 25.60 0.22 -30.67 16 8 H 0.06 3.52 7.13 -2.91 -0.02 3.50 16 9 C 0.21 11.55 4.44 85.55 0.38 11.93 16 10 N -0.54 -24.71 4.51 -875.62 -3.95 -28.66 16 11 C 0.06 2.53 5.28 86.29 0.46 2.99 16 12 C -0.11 -3.25 6.08 30.66 0.19 -3.06 16 13 C -0.11 -2.74 5.34 30.66 0.16 -2.58 16 14 C -0.07 -2.14 2.26 -10.77 -0.02 -2.17 16 15 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 16 C 0.07 1.63 5.89 86.26 0.51 2.14 16 17 N -0.69 -16.48 6.83 -514.00 -3.51 -20.00 16 18 C 0.07 1.97 6.55 86.37 0.57 2.54 16 19 C -0.11 -4.13 4.95 30.63 0.15 -3.98 16 20 C 0.09 3.39 1.70 45.00 0.08 3.46 16 21 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 22 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 23 H -0.05 -3.14 8.12 -2.38 -0.02 -3.16 16 24 H 0.02 0.99 5.77 -2.39 -0.01 0.97 16 25 H 0.06 2.66 6.72 -2.39 -0.02 2.64 16 26 H 0.01 0.23 8.14 -2.38 -0.02 0.21 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.36 6.27 8.90 -89.69 -0.80 5.47 16 34 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.04 1.92 6.31 -2.38 -0.02 1.91 16 37 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -67.01 280.84 -1.78 -68.79 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.23 Total: 8.76 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 3.14 Total: -18.91 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -7.18 Total: -106.09 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -67.01 -1.78 -68.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715009449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.219 kcal (2) G-P(sol) polarization free energy of solvation -67.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds