Wall clock time and date at job start Mon Mar 30 2020 03:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00139 * 2 1 4 4 H 1.48500 * 109.47214 * 239.99810 * 3 2 1 5 5 H 1.48504 * 109.46911 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47677 * 119.99636 * 3 2 1 7 7 C 1.37882 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99738 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00045 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47374 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.66650 * 66.45199 * 10 9 7 12 12 C 1.53054 * 109.03254 * 186.32230 * 11 10 9 13 13 C 1.53086 * 109.25162 * 299.94106 * 12 11 10 14 14 C 1.53137 * 109.24761 * 57.77317 * 13 12 11 15 15 H 1.09000 * 109.59943 * 63.20712 * 14 13 12 16 16 C 1.53109 * 109.19814 * 183.27839 * 14 13 12 17 17 N 1.46855 * 109.43505 * 60.01545 * 16 14 13 18 18 C 1.46845 * 111.23801 * 61.82475 * 17 16 14 19 19 C 1.53047 * 109.56231 * 298.36182 * 18 17 16 20 20 C 1.46727 * 111.00231 * 190.00061 * 10 9 7 21 21 H 1.09004 * 109.38652 * 54.28082 * 20 10 9 22 22 H 0.97002 * 120.00389 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47097 * 60.00452 * 9 7 2 24 24 H 1.09004 * 109.47464 * 300.00536 * 9 7 2 25 25 H 1.08997 * 110.27579 * 66.09775 * 11 10 9 26 26 H 1.09000 * 109.08510 * 305.82498 * 11 10 9 27 27 H 1.08994 * 109.50573 * 180.02562 * 12 11 10 28 28 H 1.09000 * 109.50459 * 59.87282 * 12 11 10 29 29 H 1.09005 * 109.50285 * 177.70271 * 13 12 11 30 30 H 1.08998 * 109.50599 * 297.83823 * 13 12 11 31 31 H 1.09004 * 109.47308 * 179.97438 * 16 14 13 32 32 H 1.09002 * 109.48142 * 300.02266 * 16 14 13 33 33 H 1.00900 * 110.99891 * 185.94732 * 17 16 14 34 34 H 1.08997 * 109.45197 * 58.38921 * 18 17 16 35 35 H 1.08991 * 109.45291 * 178.33248 * 18 17 16 36 36 H 1.08996 * 109.50166 * 178.94953 * 19 18 17 37 37 H 1.08994 * 109.50960 * 299.04063 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2056 -3.6157 0.0027 11 6 2.9599 -3.6519 1.2627 12 6 4.0474 -4.7242 1.1629 13 6 3.3928 -6.0852 0.9126 14 6 2.5547 -6.0146 -0.3671 15 1 3.2045 -5.8146 -1.2191 16 6 1.8355 -7.3506 -0.5722 17 7 0.9597 -7.6155 0.5765 18 6 -0.0757 -6.5823 0.7054 19 6 0.5845 -5.2221 0.9434 20 6 1.5220 -4.8922 -0.2340 21 1 0.9384 -4.8253 -1.1522 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8881 24 1 0.6246 -2.5563 0.8919 25 1 2.2950 -3.8849 2.0944 26 1 3.4229 -2.6792 1.4289 27 1 4.6119 -4.7579 2.0946 28 1 4.7187 -4.4860 0.3378 29 1 4.1657 -6.8456 0.8002 30 1 2.7500 -6.3403 1.7551 31 1 1.2370 -7.3051 -1.4821 32 1 2.5714 -8.1499 -0.6602 33 1 0.5477 -8.5343 0.5127 34 1 -0.6663 -6.5440 -0.2098 35 1 -0.7255 -6.8226 1.5468 36 1 -0.1841 -4.4531 1.0203 37 1 1.1613 -5.2542 1.8676 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715009450.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:55 Heat of formation + Delta-G solvation = -4.911718 kcal Electronic energy + Delta-G solvation = -16502.571426 eV Core-core repulsion = 14085.819372 eV Total energy + Delta-G solvation = -2416.752054 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.78709 -35.90778 -33.41277 -32.14779 -30.34218 -29.86371 -26.69734 -24.51608 -22.97378 -22.47779 -21.45650 -20.10327 -17.52534 -16.59461 -16.14691 -15.23336 -14.79839 -14.29454 -14.21562 -13.51160 -13.31323 -13.18295 -12.57495 -12.25033 -12.15330 -12.14032 -11.62483 -11.26967 -10.96663 -10.83556 -10.74464 -10.44915 -10.19328 -10.01661 -9.92971 -9.78068 -9.35973 -9.09683 -8.39528 -8.29801 -7.10419 -5.99604 -4.00521 3.35361 3.39071 3.42340 4.34953 4.44858 4.90280 5.06609 5.22325 5.32443 5.36773 5.46797 5.52418 5.66030 5.71365 5.83717 5.88821 6.00096 6.05243 6.11788 6.25656 6.37090 6.38575 6.42490 6.57197 6.60979 6.75736 6.88366 7.00497 7.16827 7.36183 7.43375 7.48590 7.85178 8.16111 8.29355 8.62997 9.07290 9.63384 11.11185 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.043274 B = 0.007634 C = 0.006905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.883429 B = 3667.056745 C = 4054.050479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.524 5.524 11 C 0.059 3.941 12 C -0.119 4.119 13 C -0.103 4.103 14 C -0.077 4.077 15 H 0.075 0.925 16 C 0.064 3.936 17 N -0.688 5.688 18 C 0.065 3.935 19 C -0.153 4.153 20 C 0.090 3.910 21 H 0.067 0.933 22 H 0.261 0.739 23 H 0.026 0.974 24 H -0.007 1.007 25 H 0.025 0.975 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.027 0.973 32 H 0.070 0.930 33 H 0.335 0.665 34 H 0.026 0.974 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 -13.566 1.196 13.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.247 5.247 11 C -0.069 4.069 12 C -0.157 4.157 13 C -0.141 4.141 14 C -0.096 4.096 15 H 0.093 0.907 16 C -0.066 4.066 17 N -0.318 5.318 18 C -0.065 4.065 19 C -0.192 4.192 20 C -0.020 4.020 21 H 0.085 0.915 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.011 0.989 25 H 0.043 0.957 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.152 0.848 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.356 -13.025 1.245 13.508 hybrid contribution -0.895 0.616 -0.132 1.095 sum 2.460 -12.409 1.113 12.699 Atomic orbital electron populations 1.69948 1.06044 1.26788 1.51152 1.24983 0.94853 0.99252 0.95530 0.86575 0.79444 0.82834 0.78633 1.20205 1.21399 1.20296 1.21152 0.93468 0.90035 1.49867 0.91959 1.19698 0.90225 0.87376 0.95950 1.62493 1.27373 1.02007 1.32811 1.21999 0.95037 0.98933 0.90944 1.21654 0.98209 0.95165 1.00692 1.21504 0.98142 0.96361 0.98091 1.21224 0.96736 0.92858 0.98774 0.90715 1.21965 0.95720 0.98017 0.90874 1.60265 1.22705 1.04991 1.43880 1.21851 0.92613 0.92443 0.99615 1.22463 1.00023 0.95461 1.01251 1.21786 0.93015 0.90447 0.96772 0.91508 0.92945 0.95561 0.98920 0.95714 0.90275 0.92785 0.91901 0.93321 0.90999 0.95472 0.91133 0.84781 0.95537 0.91406 0.91363 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.41 8.42 -34.44 -0.29 -14.70 16 8 H 0.06 1.75 7.14 -52.49 -0.38 1.38 16 9 C 0.19 5.07 4.20 -4.98 -0.02 5.05 16 10 N -0.52 -11.50 4.63 -227.45 -1.05 -12.55 16 11 C 0.06 1.19 4.99 -3.80 -0.02 1.17 16 12 C -0.12 -1.95 6.08 -26.66 -0.16 -2.12 16 13 C -0.10 -1.55 4.85 -26.62 -0.13 -1.68 16 14 C -0.08 -1.19 2.68 -90.44 -0.24 -1.43 16 15 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 16 C 0.06 0.82 5.99 -3.79 -0.02 0.80 16 17 N -0.69 -8.61 6.02 -113.77 -0.69 -9.30 16 18 C 0.06 0.90 6.56 -3.83 -0.03 0.87 16 19 C -0.15 -2.63 4.39 -26.14 -0.11 -2.75 16 20 C 0.09 1.66 2.26 -67.19 -0.15 1.51 16 21 H 0.07 1.31 8.01 -51.93 -0.42 0.89 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.03 0.75 7.99 -51.93 -0.41 0.33 16 24 H -0.01 -0.20 7.07 -51.93 -0.37 -0.56 16 25 H 0.02 0.50 6.17 -51.93 -0.32 0.18 16 26 H 0.08 1.74 6.68 -51.93 -0.35 1.39 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.13 5.99 -51.93 -0.31 0.82 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.34 3.38 8.90 -39.29 -0.35 3.03 16 34 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.31 6.98 -51.93 -0.36 0.95 16 37 H 0.07 1.31 4.83 -51.93 -0.25 1.06 16 LS Contribution 273.87 15.07 4.13 4.13 Total: -1.00 -29.51 273.87 -9.20 -38.71 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.03 Total: 0.16 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -1.27 Total: -11.79 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -1.00 Total: -48.08 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.51 -9.20 -38.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715009450.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.802 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds