Wall clock time and date at job start Mon Mar 30 2020 03:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00139 * 2 1 4 4 H 1.48500 * 109.47214 * 239.99810 * 3 2 1 5 5 H 1.48504 * 109.46911 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47677 * 119.99636 * 3 2 1 7 7 C 1.37882 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99738 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00045 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47374 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.66650 * 66.45199 * 10 9 7 12 12 C 1.53054 * 109.03254 * 186.32230 * 11 10 9 13 13 C 1.53086 * 109.25162 * 299.94106 * 12 11 10 14 14 C 1.53137 * 109.24761 * 57.77317 * 13 12 11 15 15 H 1.09000 * 109.59943 * 63.20712 * 14 13 12 16 16 C 1.53109 * 109.19814 * 183.27839 * 14 13 12 17 17 N 1.46855 * 109.43505 * 60.01545 * 16 14 13 18 18 C 1.46845 * 111.23801 * 61.82475 * 17 16 14 19 19 C 1.53047 * 109.56231 * 298.36182 * 18 17 16 20 20 C 1.46727 * 111.00231 * 190.00061 * 10 9 7 21 21 H 1.09004 * 109.38652 * 54.28082 * 20 10 9 22 22 H 0.97002 * 120.00389 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47097 * 60.00452 * 9 7 2 24 24 H 1.09004 * 109.47464 * 300.00536 * 9 7 2 25 25 H 1.08997 * 110.27579 * 66.09775 * 11 10 9 26 26 H 1.09000 * 109.08510 * 305.82498 * 11 10 9 27 27 H 1.08994 * 109.50573 * 180.02562 * 12 11 10 28 28 H 1.09000 * 109.50459 * 59.87282 * 12 11 10 29 29 H 1.09005 * 109.50285 * 177.70271 * 13 12 11 30 30 H 1.08998 * 109.50599 * 297.83823 * 13 12 11 31 31 H 1.09004 * 109.47308 * 179.97438 * 16 14 13 32 32 H 1.09002 * 109.48142 * 300.02266 * 16 14 13 33 33 H 1.00900 * 110.99891 * 185.94732 * 17 16 14 34 34 H 1.08997 * 109.45197 * 58.38921 * 18 17 16 35 35 H 1.08991 * 109.45291 * 178.33248 * 18 17 16 36 36 H 1.08996 * 109.50166 * 178.94953 * 19 18 17 37 37 H 1.08994 * 109.50960 * 299.04063 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2056 -3.6157 0.0027 11 6 2.9599 -3.6519 1.2627 12 6 4.0474 -4.7242 1.1629 13 6 3.3928 -6.0852 0.9126 14 6 2.5547 -6.0146 -0.3671 15 1 3.2045 -5.8146 -1.2191 16 6 1.8355 -7.3506 -0.5722 17 7 0.9597 -7.6155 0.5765 18 6 -0.0757 -6.5823 0.7054 19 6 0.5845 -5.2221 0.9434 20 6 1.5220 -4.8922 -0.2340 21 1 0.9384 -4.8253 -1.1522 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8881 24 1 0.6246 -2.5563 0.8919 25 1 2.2950 -3.8849 2.0944 26 1 3.4229 -2.6792 1.4289 27 1 4.6119 -4.7579 2.0946 28 1 4.7187 -4.4860 0.3378 29 1 4.1657 -6.8456 0.8002 30 1 2.7500 -6.3403 1.7551 31 1 1.2370 -7.3051 -1.4821 32 1 2.5714 -8.1499 -0.6602 33 1 0.5477 -8.5343 0.5127 34 1 -0.6663 -6.5440 -0.2098 35 1 -0.7255 -6.8226 1.5468 36 1 -0.1841 -4.4531 1.0203 37 1 1.1613 -5.2542 1.8676 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715009450.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:54 Heat of formation + Delta-G solvation = -26.170715 kcal Electronic energy + Delta-G solvation = -16503.493285 eV Core-core repulsion = 14085.819372 eV Total energy + Delta-G solvation = -2417.673913 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.19517 -37.33370 -35.19187 -33.93867 -31.72927 -31.27161 -28.68073 -26.00268 -24.69844 -23.80608 -22.90925 -21.66492 -18.88330 -18.52752 -17.57925 -16.97561 -16.35091 -15.97120 -15.52023 -15.06039 -14.65797 -14.61354 -14.14210 -13.99595 -13.70741 -13.51916 -13.20096 -12.93129 -12.74796 -12.57373 -12.20035 -12.12342 -11.88437 -11.59530 -11.48934 -11.22773 -11.06222 -10.78119 -10.60311 -9.33262 -8.91192 -8.21598 -6.32209 1.38816 1.42529 1.50446 2.38878 3.09937 3.31426 3.33007 3.79892 3.89440 4.05885 4.18814 4.25550 4.33602 4.41223 4.57555 4.63144 4.69484 4.76728 4.82742 4.89886 4.95913 5.03964 5.08582 5.15108 5.19656 5.26356 5.30972 5.36657 5.46713 5.63962 5.69906 6.05496 6.07311 6.39215 6.59505 6.71148 6.84784 7.37507 8.89149 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.043274 B = 0.007634 C = 0.006905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.883429 B = 3667.056745 C = 4054.050479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.212 3.788 10 N -0.533 5.533 11 C 0.060 3.940 12 C -0.111 4.111 13 C -0.096 4.096 14 C -0.074 4.074 15 H 0.072 0.928 16 C 0.069 3.931 17 N -0.684 5.684 18 C 0.073 3.927 19 C -0.145 4.145 20 C 0.083 3.917 21 H 0.047 0.953 22 H 0.264 0.736 23 H -0.007 1.007 24 H -0.036 1.036 25 H 0.018 0.982 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.100 0.900 33 H 0.356 0.644 34 H 0.026 0.974 35 H 0.084 0.916 36 H 0.034 0.966 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.291 -15.150 1.421 15.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.079 0.921 9 C 0.086 3.914 10 N -0.255 5.255 11 C -0.068 4.068 12 C -0.149 4.149 13 C -0.133 4.133 14 C -0.093 4.093 15 H 0.090 0.910 16 C -0.061 4.061 17 N -0.317 5.317 18 C -0.058 4.058 19 C -0.184 4.184 20 C -0.026 4.026 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.012 0.988 24 H -0.019 1.019 25 H 0.036 0.964 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.118 0.882 33 H 0.175 0.825 34 H 0.044 0.956 35 H 0.102 0.898 36 H 0.052 0.948 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.906 -14.651 1.471 15.520 hybrid contribution -1.407 1.090 -0.204 1.792 sum 3.498 -13.560 1.267 14.062 Atomic orbital electron populations 1.70085 1.07763 1.27950 1.51735 1.25939 0.95770 1.03253 0.94747 0.85425 0.78169 0.77817 0.79143 1.19320 1.20684 1.19176 1.21465 0.93574 0.91244 1.50154 0.92053 1.19284 0.90164 0.89058 0.92928 1.62427 1.26652 1.02439 1.34005 1.22002 0.95670 0.99309 0.89795 1.21612 0.96833 0.94564 1.01904 1.21459 0.98555 0.95960 0.97325 1.21224 0.95986 0.92904 0.99188 0.90970 1.21942 0.96211 0.96996 0.90912 1.60189 1.22228 1.05529 1.43791 1.21715 0.92834 0.90873 1.00329 1.22325 0.98884 0.96879 1.00345 1.21907 0.94263 0.90076 0.96336 0.93453 0.92687 0.98849 1.01855 0.96398 0.92813 0.90456 0.92058 0.90336 0.91423 0.95359 0.88185 0.82481 0.95568 0.89767 0.94752 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.97 45.38 29.54 68.60 2.03 47.40 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.53 -31.01 8.42 25.60 0.22 -30.79 16 8 H 0.06 3.55 7.14 -2.91 -0.02 3.53 16 9 C 0.21 11.86 4.20 85.55 0.36 12.22 16 10 N -0.53 -24.27 4.63 -873.51 -4.04 -28.31 16 11 C 0.06 2.47 4.99 86.32 0.43 2.90 16 12 C -0.11 -3.46 6.08 30.64 0.19 -3.27 16 13 C -0.10 -2.58 4.85 30.67 0.15 -2.43 16 14 C -0.07 -2.15 2.68 -10.68 -0.03 -2.18 16 15 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 16 C 0.07 1.54 5.99 86.35 0.52 2.06 16 17 N -0.68 -15.00 6.02 -513.85 -3.10 -18.09 16 18 C 0.07 1.92 6.56 86.33 0.57 2.49 16 19 C -0.14 -5.11 4.39 30.97 0.14 -4.98 16 20 C 0.08 3.16 2.26 45.35 0.10 3.26 16 21 H 0.05 1.94 8.01 -2.38 -0.02 1.92 16 22 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 23 H -0.01 -0.40 7.99 -2.38 -0.02 -0.42 16 24 H -0.04 -2.19 7.07 -2.38 -0.02 -2.20 16 25 H 0.02 0.75 6.17 -2.39 -0.01 0.73 16 26 H 0.05 2.43 6.68 -2.39 -0.02 2.42 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.07 1.93 5.99 -2.39 -0.01 1.92 16 31 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.36 5.77 8.90 -89.69 -0.80 4.97 16 34 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.03 1.41 6.98 -2.39 -0.02 1.39 16 37 H 0.07 2.48 4.83 -2.39 -0.01 2.46 16 Total: -1.00 -65.93 273.87 -1.48 -67.41 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.25 Total: 9.33 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 3.10 Total: -20.22 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -6.85 Total: -103.92 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -65.93 -1.48 -67.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715009450.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.237 kcal (2) G-P(sol) polarization free energy of solvation -65.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds