Wall clock time and date at job start Mon Mar 30 2020 03:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99824 * 2 1 4 4 H 1.48498 * 109.47194 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47231 * 300.00545 * 3 2 1 6 6 H 1.48504 * 109.46801 * 60.00207 * 3 2 1 7 7 C 1.37872 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00232 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47276 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.47041 * 180.02562 * 10 9 7 12 12 C 1.46896 * 110.99987 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47190 * 179.97438 * 12 11 10 14 14 C 1.56243 * 116.68892 * 61.01289 * 13 12 11 15 15 C 1.54658 * 103.36289 * 159.81506 * 14 13 12 16 16 N 1.49915 * 105.09419 * 0.78333 * 15 14 13 17 17 C 1.49516 * 106.01300 * 71.16372 * 16 15 14 18 18 C 1.54660 * 105.28087 * 288.72484 * 17 16 15 19 19 C 1.50460 * 102.01968 * 324.72835 * 16 15 14 20 20 H 0.96993 * 120.00504 * 359.97438 * 1 2 3 21 21 H 1.09010 * 109.46847 * 60.00325 * 9 7 2 22 22 H 1.08997 * 109.47463 * 300.00478 * 9 7 2 23 23 H 1.08993 * 109.46762 * 60.00365 * 10 9 7 24 24 H 1.08997 * 109.47201 * 300.00560 * 10 9 7 25 25 H 1.00896 * 110.99482 * 303.95528 * 11 10 9 26 26 H 1.09007 * 109.46994 * 59.99560 * 12 11 10 27 27 H 1.09004 * 109.47125 * 300.00194 * 12 11 10 28 28 H 1.09002 * 110.67045 * 278.33055 * 14 13 12 29 29 H 1.09001 * 110.67212 * 41.30044 * 14 13 12 30 30 H 1.09002 * 110.28182 * 119.70157 * 15 14 13 31 31 H 1.09000 * 110.27820 * 241.78703 * 15 14 13 32 32 H 1.08994 * 110.28371 * 169.77601 * 17 16 15 33 33 H 1.08997 * 110.36457 * 47.71245 * 17 16 15 34 34 H 1.09005 * 110.67035 * 240.91173 * 18 17 16 35 35 H 1.09000 * 110.81372 * 117.84485 * 18 17 16 36 36 H 1.09002 * 111.90767 * 297.89847 * 19 16 15 37 37 H 1.09000 * 111.91197 * 171.69129 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9343 -0.0012 12 6 2.4354 -6.0759 -0.0006 13 6 1.6354 -7.3800 -0.0006 14 6 0.6922 -7.6247 -1.2220 15 6 0.4657 -9.1544 -1.1978 16 7 1.2403 -9.6451 -0.0118 17 6 0.4934 -9.1711 1.1935 18 6 0.7201 -7.6419 1.2383 19 6 2.4362 -8.7320 -0.0190 20 1 -0.4850 0.8399 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 2.8719 -3.6043 0.8894 24 1 2.8721 -3.6042 -0.8904 25 1 0.8742 -4.9845 0.7800 26 1 3.0628 -6.0349 0.8899 27 1 3.0641 -6.0348 -0.8901 28 1 -0.2510 -7.0940 -1.0922 29 1 1.1779 -7.3223 -2.1498 30 1 -0.5943 -9.3775 -1.0768 31 1 0.8456 -9.6071 -2.1138 32 1 0.8925 -9.6387 2.0935 33 1 -0.5691 -9.3926 1.0927 34 1 1.2279 -7.3550 2.1592 35 1 -0.2245 -7.1072 1.1387 36 1 3.0268 -8.8425 -0.9285 37 1 3.0473 -8.8550 0.8751 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715637027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:28 Heat of formation + Delta-G solvation = 8.782146 kcal Electronic energy + Delta-G solvation = -15481.434746 eV Core-core repulsion = 13065.276502 eV Total energy + Delta-G solvation = -2416.158244 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.78236 -35.92050 -33.08652 -31.11324 -30.65567 -28.74541 -28.16218 -24.97389 -23.02032 -22.42531 -21.10762 -20.43147 -18.49824 -16.30604 -16.12872 -15.64812 -15.37328 -14.81822 -14.43974 -13.97578 -13.01059 -12.88564 -12.81824 -12.68847 -12.15349 -12.08526 -11.70417 -11.53850 -11.18053 -11.06111 -10.93414 -10.83871 -10.54340 -10.45933 -10.15381 -9.95764 -9.41223 -9.17430 -9.00461 -8.36499 -7.82090 -6.00778 -4.03380 3.30486 3.37862 3.41908 3.86090 4.33744 4.42562 4.47175 4.73561 5.04427 5.07250 5.13381 5.16115 5.26091 5.35390 5.47674 5.57609 5.71114 5.72486 5.76400 5.82284 5.85607 5.90727 6.03175 6.17666 6.24410 6.32762 6.41418 6.48655 6.58598 6.96769 7.46949 7.71861 7.81594 7.94600 8.07375 8.42668 9.04166 9.60629 11.10755 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.066153 B = 0.004552 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.162396 B = 6149.910785 C = 6228.346547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.688 5.688 12 C 0.095 3.905 13 C -0.093 4.093 14 C -0.130 4.130 15 C 0.009 3.991 16 N -0.471 5.471 17 C 0.013 3.987 18 C -0.146 4.146 19 C 0.016 3.984 20 H 0.260 0.740 21 H 0.025 0.975 22 H 0.013 0.987 23 H 0.015 0.985 24 H 0.058 0.942 25 H 0.335 0.665 26 H 0.027 0.973 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.075 -17.203 0.730 17.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.318 5.318 12 C -0.035 4.035 13 C -0.096 4.096 14 C -0.169 4.169 15 C -0.120 4.120 16 N -0.191 5.191 17 C -0.116 4.116 18 C -0.185 4.185 19 C -0.114 4.114 20 H 0.070 0.930 21 H 0.043 0.957 22 H 0.031 0.969 23 H 0.033 0.967 24 H 0.076 0.924 25 H 0.152 0.848 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.952 -17.868 0.035 17.975 hybrid contribution 0.487 1.949 0.958 2.226 sum 2.440 -15.919 0.993 16.136 Atomic orbital electron populations 1.69980 1.06049 1.26493 1.50771 1.25002 0.94833 0.99234 0.95287 0.86533 0.80081 0.83771 0.77592 1.19760 1.20953 1.21030 1.21219 0.93025 0.91019 1.50738 0.92710 1.19067 0.94019 0.90466 0.97662 1.22161 0.96982 0.88490 0.98611 1.60561 1.19675 1.01896 1.49692 1.21313 0.93692 0.88334 1.00196 1.23700 0.95244 0.94969 0.95638 1.23078 1.00212 0.95361 0.98238 1.23703 0.98781 0.94384 0.95133 1.70039 1.04461 1.42331 1.02305 1.23550 0.99179 0.93803 0.95037 1.23258 1.00422 0.96670 0.98158 1.24507 0.94463 0.89992 1.02407 0.93041 0.95668 0.96895 0.96723 0.92355 0.84792 0.95510 0.90998 0.90676 0.91212 0.90897 0.90296 0.90344 0.90804 0.91572 0.90673 0.89707 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.03 0.66 5.23 -27.88 -0.15 0.52 16 10 C 0.07 1.38 5.62 -3.82 -0.02 1.36 16 11 N -0.69 -12.07 6.39 -113.78 -0.73 -12.80 16 12 C 0.09 1.35 5.66 -3.83 -0.02 1.33 16 13 C -0.09 -1.13 1.26 -148.78 -0.19 -1.32 16 14 C -0.13 -1.57 5.92 -24.12 -0.14 -1.72 16 15 C 0.01 0.09 6.64 -1.26 -0.01 0.09 16 16 N -0.47 -5.34 6.94 -221.72 -1.54 -6.88 16 17 C 0.01 0.14 6.61 -1.49 -0.01 0.13 16 18 C -0.15 -1.66 5.43 -24.12 -0.13 -1.79 16 19 C 0.02 0.17 6.52 0.43 0.00 0.18 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.02 0.71 8.14 -51.92 -0.42 0.29 16 22 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.33 5.77 8.16 -39.29 -0.32 5.45 16 26 H 0.03 0.38 8.14 -51.92 -0.42 -0.05 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.98 7.82 -51.93 -0.41 0.58 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.73 7.71 -51.93 -0.40 0.33 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.72 7.71 -51.93 -0.40 0.32 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.90 7.82 -51.93 -0.41 0.49 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 293.91 15.07 4.43 4.43 Total: -1.00 -29.72 293.91 -9.75 -39.47 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.55 Total: 0.24 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -1.08 Total: -14.85 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -1.53 Total: -45.98 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.72 -9.75 -39.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715637027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.254 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds