Wall clock time and date at job start Mon Mar 30 2020 03:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99897 * 2 1 4 4 H 1.48500 * 109.47252 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47308 * 300.00067 * 3 2 1 6 6 H 1.48497 * 109.47322 * 59.99883 * 3 2 1 7 7 C 1.37869 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00449 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47202 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46956 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47444 * 179.97438 * 11 10 9 13 13 C 1.46896 * 111.00115 * 180.02562 * 12 11 10 14 14 C 1.56244 * 117.39147 * 61.83526 * 13 12 11 15 15 C 1.54650 * 103.21520 * 159.36839 * 14 13 12 16 16 N 1.49523 * 105.28742 * 0.65814 * 15 14 13 17 17 C 1.49518 * 105.92402 * 71.25957 * 16 15 14 18 18 C 1.54655 * 105.28509 * 288.74550 * 17 16 15 19 19 C 1.50466 * 102.03288 * 324.85029 * 16 15 14 20 20 H 0.97002 * 119.99889 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46825 * 59.99553 * 9 7 2 22 22 H 1.08999 * 109.46993 * 300.00088 * 9 7 2 23 23 H 1.08992 * 109.47413 * 59.99785 * 10 9 7 24 24 H 1.08996 * 109.46677 * 299.99225 * 10 9 7 25 25 H 1.09009 * 109.47303 * 59.99845 * 11 10 9 26 26 H 1.08999 * 109.47224 * 299.99910 * 11 10 9 27 27 H 1.00903 * 110.99883 * 303.95639 * 12 11 10 28 28 H 1.08995 * 110.66698 * 277.80389 * 14 13 12 29 29 H 1.09004 * 110.66815 * 40.93719 * 14 13 12 30 30 H 1.09001 * 110.28341 * 241.70684 * 15 14 13 31 31 H 1.09001 * 110.28699 * 119.61349 * 15 14 13 32 32 H 1.09010 * 110.27908 * 47.69132 * 17 16 15 33 33 H 1.09000 * 110.28496 * 169.78368 * 17 16 15 34 34 H 1.08998 * 110.66669 * 240.91109 * 18 17 16 35 35 H 1.08996 * 110.67370 * 117.76801 * 18 17 16 36 36 H 1.08993 * 111.90654 * 171.59955 * 19 16 15 37 37 H 1.09004 * 111.90799 * 297.73694 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4803 -4.9870 0.0025 12 7 2.4348 -6.1036 0.0031 13 6 1.7345 -7.3949 0.0031 14 6 0.8167 -7.7149 -1.2202 15 6 0.6926 -9.2557 -1.1755 16 7 1.4906 -9.6812 0.0152 17 6 0.7070 -9.2448 1.2114 18 6 0.8315 -7.7035 1.2403 19 6 2.6233 -8.6909 0.0038 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.8713 -3.6039 0.8922 24 1 2.8725 -3.6047 -0.8878 25 1 0.8539 -5.0455 -0.8878 26 1 0.8533 -5.0442 0.8922 27 1 3.0698 -6.0370 -0.7783 28 1 -0.1603 -7.2465 -1.1010 29 1 1.2879 -7.3936 -2.1491 30 1 1.1058 -9.6946 -2.0837 31 1 -0.3507 -9.5475 -1.0550 32 1 -0.3378 -9.5375 1.1061 33 1 1.1311 -9.6752 2.1186 34 1 1.3138 -7.3737 2.1604 35 1 -0.1469 -7.2362 1.1285 36 1 3.2360 -8.7635 0.9023 37 1 3.2259 -8.7726 -0.9009 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715710011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:30 Heat of formation + Delta-G solvation = 5.697097 kcal Electronic energy + Delta-G solvation = -15488.406907 eV Core-core repulsion = 13072.114886 eV Total energy + Delta-G solvation = -2416.292021 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.86461 -35.81904 -33.32606 -31.21939 -30.74995 -28.84811 -27.95857 -25.63794 -22.64162 -22.47260 -21.19786 -20.04478 -18.79277 -16.39909 -16.19392 -15.94673 -15.45487 -14.83609 -14.43399 -14.00013 -13.11370 -12.90601 -12.81528 -12.37736 -12.26754 -12.06700 -11.74061 -11.52878 -11.35277 -11.31130 -10.88284 -10.68837 -10.53673 -10.47332 -10.33518 -9.71570 -9.39831 -9.15989 -8.99121 -8.35259 -8.24440 -6.00077 -4.02193 3.31166 3.38577 3.43120 3.77608 4.10709 4.40906 4.46831 4.59944 4.85551 4.97089 5.04469 5.10941 5.35956 5.41946 5.45963 5.51227 5.68159 5.69696 5.74544 5.75943 5.81498 5.87751 5.96131 6.11756 6.28513 6.33685 6.50613 6.68872 6.76226 7.11407 7.29372 7.55252 7.67882 7.82109 8.00183 8.43396 9.05215 9.62038 11.11467 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.067376 B = 0.004509 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.477945 B = 6207.964014 C = 6279.340458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.108 4.108 11 C 0.061 3.939 12 N -0.653 5.653 13 C 0.076 3.924 14 C -0.180 4.180 15 C 0.016 3.984 16 N -0.468 5.468 17 C 0.014 3.986 18 C -0.139 4.139 19 C 0.019 3.981 20 H 0.259 0.741 21 H 0.013 0.987 22 H 0.016 0.984 23 H 0.056 0.944 24 H 0.045 0.955 25 H 0.026 0.974 26 H 0.067 0.933 27 H 0.342 0.658 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 -17.609 -0.650 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.067 4.067 12 N -0.281 5.281 13 C -0.019 4.019 14 C -0.222 4.222 15 C -0.113 4.113 16 N -0.189 5.189 17 C -0.115 4.115 18 C -0.178 4.178 19 C -0.110 4.110 20 H 0.069 0.931 21 H 0.032 0.968 22 H 0.034 0.966 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.161 0.839 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.742 -18.223 0.048 18.306 hybrid contribution -0.338 1.928 -0.999 2.197 sum 1.405 -16.295 -0.951 16.383 Atomic orbital electron populations 1.69977 1.06083 1.26460 1.51119 1.25029 0.94843 0.99290 0.95359 0.86538 0.80154 0.83774 0.77561 1.19700 1.21044 1.21001 1.21292 0.93104 0.91022 1.50239 0.92594 1.19062 0.93999 0.91390 0.97093 1.21639 0.99228 0.92929 1.00779 1.22131 0.94150 0.90366 1.00064 1.60361 1.19071 0.99638 1.49056 1.23896 0.92991 0.90914 0.94087 1.23813 1.01364 0.97168 0.99816 1.23505 0.98845 0.93570 0.95390 1.70005 1.05715 1.40894 1.02242 1.23571 0.98901 0.93747 0.95328 1.23157 0.99717 0.96196 0.98774 1.24480 0.94698 0.88949 1.02900 0.93089 0.96843 0.96602 0.92493 0.93608 0.95580 0.91412 0.83923 0.91079 0.91457 0.90163 0.90744 0.90735 0.89897 0.90365 0.91275 0.89093 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.23 5.41 -26.73 -0.14 -2.38 16 11 C 0.06 1.05 5.39 -3.83 -0.02 1.03 16 12 N -0.65 -9.43 6.70 -94.25 -0.63 -10.06 16 13 C 0.08 0.94 1.46 -125.87 -0.18 0.76 16 14 C -0.18 -2.09 5.47 -24.12 -0.13 -2.23 16 15 C 0.02 0.17 6.61 -1.49 -0.01 0.16 16 16 N -0.47 -5.21 6.94 -222.06 -1.54 -6.75 16 17 C 0.01 0.14 6.61 -1.49 -0.01 0.13 16 18 C -0.14 -1.67 5.42 -24.12 -0.13 -1.80 16 19 C 0.02 0.21 6.69 0.44 0.00 0.22 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.03 0.45 7.60 -51.92 -0.39 0.06 16 26 H 0.07 1.21 7.58 -51.93 -0.39 0.82 16 27 H 0.34 4.61 8.81 -39.29 -0.35 4.27 16 28 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.71 7.69 -51.93 -0.40 0.31 16 32 H 0.07 0.71 7.69 -51.92 -0.40 0.31 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.85 7.82 -51.93 -0.41 0.45 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 292.86 15.07 4.41 4.41 Total: -1.00 -29.88 292.86 -9.74 -39.62 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.51 Total: -0.24 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -1.18 Total: -17.31 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: -1.44 Total: -43.27 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.88 -9.74 -39.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715710011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.316 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds