Wall clock time and date at job start Mon Mar 30 2020 03:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48500 * 109.46802 * 239.99699 * 3 2 1 5 5 H 1.48498 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47344 * 119.99497 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.47912 * 110.99887 * 179.97438 * 10 9 7 12 12 H 1.08977 * 107.21522 * 326.09636 * 11 10 9 13 13 C 1.52370 * 108.53121 * 207.06153 * 11 10 9 14 14 C 1.52361 * 112.40779 * 194.20770 * 13 11 10 15 15 H 1.10050 * 108.68859 * 171.49090 * 14 13 11 16 16 C 1.52337 * 111.55777 * 291.33749 * 14 13 11 17 17 C 1.52123 * 112.69410 * 69.55585 * 16 14 13 18 18 C 1.52159 * 112.98494 * 43.89797 * 17 16 14 19 19 N 1.45781 * 112.74822 * 314.65529 * 18 17 16 20 20 C 1.46531 * 112.04420 * 57.10833 * 19 18 17 21 21 C 1.45835 * 114.06317 * 288.56022 * 19 18 17 22 22 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 24 24 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 25 25 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 26 26 H 1.09659 * 109.12276 * 315.47819 * 13 11 10 27 27 H 1.09650 * 109.16450 * 72.87478 * 13 11 10 28 28 H 1.09755 * 109.07456 * 308.12336 * 16 14 13 29 29 H 1.09739 * 109.10776 * 191.07597 * 16 14 13 30 30 H 1.08775 * 110.89013 * 278.75026 * 17 16 14 31 31 H 1.10665 * 107.89764 * 162.99687 * 17 16 14 32 32 H 1.09724 * 109.05828 * 193.22076 * 18 17 16 33 33 H 1.09696 * 109.11333 * 76.16794 * 18 17 16 34 34 H 1.08865 * 109.91168 * 54.50338 * 20 19 18 35 35 H 1.08842 * 109.94228 * 175.62126 * 20 19 18 36 36 H 1.09585 * 109.36100 * 308.85624 * 21 19 18 37 37 H 1.09623 * 109.26648 * 191.19103 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5005 -4.9160 0.0012 12 1 0.5874 -4.7874 0.5821 13 6 2.4007 -5.9548 0.6584 14 6 1.9250 -7.3798 0.4042 15 1 2.6929 -8.0783 0.7696 16 6 0.6162 -7.6704 1.1275 17 6 -0.5628 -6.9140 0.5341 18 6 -0.5806 -6.9403 -0.9872 19 7 0.7270 -6.6670 -1.5710 20 6 1.7473 -7.6070 -1.0991 21 6 1.1592 -5.2805 -1.4390 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5572 -0.8896 24 1 0.6240 -2.5568 0.8903 25 1 2.8405 -3.5487 0.7819 26 1 3.4210 -5.8414 0.2729 27 1 2.4316 -5.7722 1.7392 28 1 0.7231 -7.3989 2.1856 29 1 0.4133 -8.7479 1.0840 30 1 -0.5935 -5.8916 0.9040 31 1 -1.4918 -7.3972 0.8920 32 1 -1.2999 -6.1953 -1.3500 33 1 -0.9282 -7.9242 -1.3254 34 1 1.4212 -8.6298 -1.2800 35 1 2.6888 -7.4217 -1.6129 36 1 0.3648 -4.6166 -1.7984 37 1 2.0417 -5.1152 -2.0679 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717229937.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:08 Heat of formation + Delta-G solvation = -9.334190 kcal Electronic energy + Delta-G solvation = -16220.975553 eV Core-core repulsion = 13804.031726 eV Total energy + Delta-G solvation = -2416.943827 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.22761 -35.35323 -33.09597 -32.73040 -31.57693 -29.12806 -26.25977 -25.74671 -23.37832 -22.25088 -21.48576 -20.26755 -18.26934 -16.45791 -15.85653 -14.91776 -14.76135 -14.72591 -14.41190 -14.02995 -13.28546 -13.22794 -12.84553 -12.41054 -12.15945 -11.87918 -11.61394 -11.32392 -11.20254 -11.12595 -10.81308 -10.73167 -10.71307 -10.41846 -10.23503 -9.73958 -9.63180 -9.16302 -8.47169 -7.87743 -7.21116 -6.02294 -4.04313 3.34080 3.37835 3.41060 4.21957 4.43824 4.73933 4.80452 4.92021 5.13624 5.20589 5.33490 5.33916 5.41869 5.53324 5.56591 5.69295 5.75831 5.85630 5.92000 5.98517 6.09213 6.15555 6.17601 6.27999 6.32051 6.45771 6.57628 6.74717 7.22648 7.40894 7.44567 7.56829 7.80115 8.14167 8.42032 8.62094 9.05019 9.60595 11.08764 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.048808 B = 0.006256 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.534086 B = 4474.625321 C = 4603.449229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.061 0.939 9 C 0.196 3.804 10 N -0.688 5.688 11 C 0.055 3.945 12 H 0.040 0.960 13 C -0.110 4.110 14 C -0.118 4.118 15 H 0.067 0.933 16 C -0.104 4.104 17 C -0.156 4.156 18 C 0.069 3.931 19 N -0.548 5.548 20 C 0.070 3.930 21 C 0.079 3.921 22 H 0.262 0.738 23 H 0.028 0.972 24 H -0.017 1.017 25 H 0.327 0.673 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.970 -15.502 0.697 15.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.079 0.921 9 C 0.069 3.931 10 N -0.319 5.319 11 C -0.057 4.057 12 H 0.058 0.942 13 C -0.148 4.148 14 C -0.139 4.139 15 H 0.085 0.915 16 C -0.141 4.141 17 C -0.195 4.195 18 C -0.060 4.060 19 N -0.269 5.269 20 C -0.058 4.058 21 C -0.049 4.049 22 H 0.071 0.929 23 H 0.046 0.954 24 H 0.001 0.999 25 H 0.144 0.856 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.820 -15.420 -0.472 15.449 hybrid contribution 0.072 1.145 1.965 2.275 sum 0.892 -14.275 1.492 14.380 Atomic orbital electron populations 1.69950 1.06084 1.26878 1.50859 1.24990 0.94874 0.99349 0.95341 0.86543 0.79426 0.82680 0.78643 1.20121 1.21340 1.20315 1.21164 0.93475 0.90317 1.50409 0.92057 1.19574 0.90555 0.87417 0.95521 1.61029 1.21069 1.00965 1.48819 1.22078 0.95984 0.90757 0.96857 0.94177 1.21525 0.99877 0.93411 1.00013 1.21502 0.97101 0.97155 0.98118 0.91461 1.21235 0.94267 0.99455 0.99183 1.22017 0.97951 1.01668 0.97851 1.21692 0.91013 1.01687 0.91562 1.60267 1.02589 1.04613 1.59411 1.21925 0.95630 0.95974 0.92292 1.21783 1.01469 0.86340 0.95343 0.92874 0.95419 0.99945 0.85646 0.91386 0.92857 0.92561 0.92625 0.91247 0.92683 0.91100 0.91578 0.91158 0.90609 0.91108 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.79 9.32 -34.44 -0.32 -15.11 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.20 5.21 5.20 -4.97 -0.03 5.18 16 10 N -0.69 -14.92 6.28 -107.93 -0.68 -15.60 16 11 C 0.05 0.99 2.10 -67.77 -0.14 0.84 16 12 H 0.04 0.79 5.11 -51.94 -0.27 0.53 16 13 C -0.11 -1.63 4.56 -27.38 -0.12 -1.76 16 14 C -0.12 -1.46 2.91 -91.25 -0.27 -1.73 16 15 H 0.07 0.73 8.23 -51.33 -0.42 0.31 16 16 C -0.10 -1.24 5.37 -27.52 -0.15 -1.38 16 17 C -0.16 -2.02 5.09 -27.61 -0.14 -2.16 16 18 C 0.07 0.91 5.75 -4.86 -0.03 0.89 16 19 N -0.55 -7.99 4.78 -236.56 -1.13 -9.12 16 20 C 0.07 0.87 5.70 -3.99 -0.02 0.85 16 21 C 0.08 1.37 5.13 -4.69 -0.02 1.35 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.03 0.79 7.59 -51.93 -0.39 0.40 16 24 H -0.02 -0.49 8.01 -51.93 -0.42 -0.91 16 25 H 0.33 6.85 8.29 -39.29 -0.33 6.52 16 26 H 0.07 1.01 8.19 -51.56 -0.42 0.59 16 27 H 0.05 0.78 8.20 -51.56 -0.42 0.36 16 28 H 0.06 0.67 8.20 -51.50 -0.42 0.25 16 29 H 0.05 0.58 8.20 -51.51 -0.42 0.16 16 30 H 0.07 1.06 5.77 -52.06 -0.30 0.76 16 31 H 0.05 0.62 8.28 -50.97 -0.42 0.20 16 32 H 0.07 0.98 8.11 -51.52 -0.42 0.56 16 33 H 0.07 0.77 8.20 -51.53 -0.42 0.34 16 34 H 0.07 0.77 8.13 -52.00 -0.42 0.35 16 35 H 0.08 0.94 8.13 -52.02 -0.42 0.52 16 36 H 0.07 1.36 7.64 -51.60 -0.39 0.97 16 37 H 0.08 1.45 8.19 -51.58 -0.42 1.03 16 LS Contribution 280.40 15.07 4.23 4.23 Total: -1.00 -29.59 280.40 -9.49 -39.08 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.28 Total: 2.41 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.34 Total: -11.51 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -1.07 Total: -51.10 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.59 -9.49 -39.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717229937.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.744 kcal (2) G-P(sol) polarization free energy of solvation -29.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds