Wall clock time and date at job start Mon Mar 30 2020 03:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 110.01535 * 2 1 4 4 C 1.54260 * 110.03257 * 121.44184 * 2 1 3 5 5 C 1.55031 * 104.28042 * 142.80245 * 4 2 1 6 6 C 1.54886 * 102.68471 * 322.23697 * 5 4 2 7 7 H 1.08999 * 110.48686 * 279.02524 * 6 5 4 8 8 O 1.42902 * 110.48833 * 156.51360 * 6 5 4 9 9 C 1.42905 * 113.99880 * 93.24455 * 8 6 5 10 10 C 1.52998 * 109.47188 * 180.02562 * 9 8 6 11 11 C 1.50697 * 115.55278 * 39.88933 * 10 9 8 12 12 H 1.08004 * 120.00482 * 264.96043 * 11 10 9 13 13 C 1.37882 * 119.99959 * 84.95371 * 11 10 9 14 14 N 1.31512 * 119.99668 * 358.51850 * 13 11 10 15 15 Si 1.86800 * 119.99943 * 178.51925 * 13 11 10 16 16 H 1.48508 * 109.46817 * 90.00362 * 15 13 11 17 17 H 1.48497 * 109.46958 * 209.99822 * 15 13 11 18 18 H 1.48492 * 109.47165 * 330.00171 * 15 13 11 19 19 C 1.52999 * 117.49658 * 254.18613 * 10 9 8 20 20 C 1.52992 * 60.00033 * 252.50860 * 19 10 9 21 21 C 1.53878 * 110.03291 * 238.61151 * 2 1 3 22 22 H 1.09002 * 109.46853 * 181.38977 * 1 2 3 23 23 H 1.08991 * 109.47198 * 301.39104 * 1 2 3 24 24 H 1.08997 * 109.47201 * 61.39225 * 1 2 3 25 25 H 1.08994 * 110.48831 * 261.57188 * 4 2 1 26 26 H 1.09004 * 110.48928 * 24.08714 * 4 2 1 27 27 H 1.08997 * 110.88012 * 203.90075 * 5 4 2 28 28 H 1.09004 * 110.69441 * 80.48345 * 5 4 2 29 29 H 1.09001 * 109.46389 * 299.99862 * 9 8 6 30 30 H 1.09002 * 109.47168 * 59.99558 * 9 8 6 31 31 H 0.97001 * 119.99509 * 179.97438 * 14 13 11 32 32 H 1.09006 * 117.50153 * 359.97438 * 19 10 9 33 33 H 1.09004 * 117.49970 * 145.01657 * 19 10 9 34 34 H 1.09003 * 117.50077 * 252.51077 * 20 19 10 35 35 H 1.08998 * 117.50424 * 107.48736 * 20 19 10 36 36 H 1.09000 * 110.03155 * 121.42502 * 21 2 1 37 37 H 1.08999 * 110.03308 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7560 1.2365 5 6 3.3138 -1.5045 0.7194 6 6 2.8876 -1.9402 -0.7044 7 1 2.2779 -2.8427 -0.6607 8 8 4.0364 -2.1536 -1.5271 9 6 4.4941 -3.5072 -1.5465 10 6 5.7215 -3.6175 -2.4532 11 6 6.7027 -2.4775 -2.3607 12 1 6.6434 -1.6558 -3.0592 13 6 7.6761 -2.4832 -1.3842 14 7 7.7302 -3.4691 -0.5155 15 14 8.9180 -1.0907 -1.2953 16 1 8.3932 -0.0149 -0.4162 17 1 10.1970 -1.6028 -0.7411 18 1 9.1509 -0.5474 -2.6575 19 6 5.5328 -4.2785 -3.8201 20 6 6.2858 -5.0161 -2.7112 21 6 2.0572 -0.7530 -1.2341 22 1 -0.3633 -1.0274 0.0249 23 1 -0.3633 0.5352 0.8772 24 1 -0.3633 0.4920 -0.9022 25 1 2.3297 -0.0545 2.0254 26 1 1.3134 -1.4651 1.5974 27 1 3.5312 -2.3734 1.3405 28 1 4.1721 -0.8338 0.6774 29 1 4.7609 -3.8149 -0.5354 30 1 3.7023 -4.1531 -1.9259 31 1 8.4152 -3.4733 0.1712 32 1 4.5343 -4.6352 -4.0733 33 1 6.1183 -3.8887 -4.6528 34 1 7.3668 -5.1115 -2.8143 35 1 5.7828 -5.8575 -2.2348 36 1 2.6867 -0.0944 -1.8326 37 1 1.2230 -1.1188 -1.8328 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721547734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:09 Heat of formation + Delta-G solvation = -58.914974 kcal Electronic energy + Delta-G solvation = -15896.953912 eV Core-core repulsion = 13445.567350 eV Total energy + Delta-G solvation = -2451.386562 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.99725 -38.49645 -36.58626 -33.94800 -31.49604 -29.54187 -27.82926 -26.81966 -25.47983 -22.91527 -21.66949 -21.09566 -20.43853 -18.34480 -17.47069 -16.66832 -16.41042 -15.89480 -15.65601 -15.09785 -14.62778 -14.26966 -14.08648 -13.86184 -13.42999 -12.99243 -12.86653 -12.81791 -12.59999 -12.30244 -12.22528 -11.99636 -11.75529 -11.60651 -11.50204 -11.28420 -11.24966 -10.84552 -10.42108 -10.28135 -9.81998 -8.07509 -6.14985 1.39077 1.40306 1.49759 2.44341 2.97319 3.22704 3.50772 3.70572 3.72376 3.98186 4.26654 4.34436 4.44948 4.48954 4.54681 4.58978 4.61703 4.69820 4.71801 4.86835 4.93094 4.98317 5.00160 5.04414 5.12151 5.16965 5.23331 5.28358 5.35384 5.38833 5.57222 5.59405 5.63514 5.80203 6.40337 6.74365 6.89486 7.50745 9.01800 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.026566 B = 0.008180 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.714577 B = 3422.007785 C = 4004.954193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.072 0.928 4 C -0.108 4.108 5 C -0.147 4.147 6 C 0.069 3.931 7 H 0.065 0.935 8 O -0.380 6.380 9 C 0.123 3.877 10 C 0.004 3.996 11 C -0.486 4.486 12 H 0.043 0.957 13 C 0.025 3.975 14 N -0.911 5.911 15 Si 0.945 3.055 16 H -0.280 1.280 17 H -0.281 1.281 18 H -0.270 1.270 19 C -0.188 4.188 20 C -0.150 4.150 21 C -0.113 4.113 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.020 0.980 30 H 0.037 0.963 31 H 0.257 0.743 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.011 3.696 2.120 13.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.091 0.909 4 C -0.146 4.146 5 C -0.185 4.185 6 C 0.011 3.989 7 H 0.083 0.917 8 O -0.299 6.299 9 C 0.046 3.954 10 C 0.004 3.996 11 C -0.524 4.524 12 H 0.061 0.939 13 C -0.175 4.175 14 N -0.550 5.550 15 Si 0.771 3.229 16 H -0.207 1.207 17 H -0.206 1.206 18 H -0.195 1.195 19 C -0.225 4.225 20 C -0.188 4.188 21 C -0.151 4.151 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.816 3.781 2.160 13.536 hybrid contribution 1.115 0.257 0.348 1.195 sum -11.702 4.038 2.508 12.630 Atomic orbital electron populations 1.21847 0.92972 1.02273 1.02403 1.21690 0.97049 0.99009 0.93359 0.90930 1.22367 0.95759 0.99026 0.97419 1.22949 0.98823 0.99994 0.96779 1.23172 0.87151 0.98261 0.90322 0.91724 1.88038 1.45861 1.28174 1.67856 1.21812 0.93907 0.82106 0.97572 1.18978 0.94299 0.93016 0.93343 1.20478 1.12509 1.04945 1.14461 0.93917 1.25571 0.98988 0.97715 0.95189 1.70093 1.34841 1.32659 1.17387 0.85767 0.78816 0.80038 0.78293 1.20652 1.20634 1.19482 1.23084 1.00420 1.05923 0.93059 1.22394 0.98002 0.95637 1.02761 1.22262 0.98444 0.96028 0.98334 0.92271 0.91484 0.92069 0.90758 0.90046 0.92634 0.93373 0.96214 0.94496 0.93364 0.88865 0.90509 0.91933 0.90409 0.92496 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.85 71.98 0.64 -1.76 16 2 C -0.09 -2.16 3.50 -10.07 -0.04 -2.20 16 3 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 4 C -0.11 -2.66 6.36 31.72 0.20 -2.46 16 5 C -0.15 -5.05 6.63 31.93 0.21 -4.84 16 6 C 0.07 2.46 3.33 31.67 0.11 2.57 16 7 H 0.06 2.11 7.84 -2.39 -0.02 2.09 16 8 O -0.38 -17.75 9.44 -148.98 -1.41 -19.15 16 9 C 0.12 5.82 5.85 71.98 0.42 6.24 16 10 C 0.00 0.21 1.81 -52.93 -0.10 0.11 16 11 C -0.49 -28.10 8.24 25.60 0.21 -27.89 16 12 H 0.04 2.53 7.81 -2.91 -0.02 2.51 16 13 C 0.02 1.41 5.41 84.66 0.46 1.86 16 14 N -0.91 -53.66 12.80 21.45 0.27 -53.39 16 15 Si 0.94 45.59 29.54 68.60 2.03 47.61 16 16 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 19 C -0.19 -8.30 9.88 30.59 0.30 -8.00 16 20 C -0.15 -7.21 9.33 30.59 0.29 -6.93 16 21 C -0.11 -3.30 6.22 31.32 0.19 -3.11 16 22 H 0.06 0.99 8.12 -2.39 -0.02 0.97 16 23 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.08 1.72 7.83 -2.38 -0.02 1.70 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.04 1.54 7.91 -2.39 -0.02 1.52 16 31 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.09 3.55 8.08 -2.38 -0.02 3.53 16 33 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 34 H 0.06 3.24 8.14 -2.39 -0.02 3.22 16 35 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 36 H 0.06 1.87 8.07 -2.39 -0.02 1.86 16 37 H 0.08 2.05 7.67 -2.39 -0.02 2.04 16 Total: -1.00 -63.33 301.58 4.79 -58.53 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.00 Total: 12.79 kcal Atomic # 6 Polarization: -49.29 SS G_CDS: 2.90 Total: -46.39 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.27 Total: -53.39 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -1.41 Total: -19.15 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -63.33 4.79 -58.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721547734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.381 kcal (2) G-P(sol) polarization free energy of solvation -63.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds