Wall clock time and date at job start Mon Mar 30 2020 03:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.67024 * 2 1 4 4 C 1.54887 * 110.91470 * 123.35055 * 2 1 3 5 5 C 1.54264 * 104.19710 * 156.33328 * 4 2 1 6 6 C 1.53878 * 106.59593 * 336.38195 * 5 4 2 7 7 H 1.09004 * 110.02725 * 119.29032 * 6 5 4 8 8 O 1.42897 * 110.03347 * 240.66556 * 6 5 4 9 9 C 1.42893 * 114.00438 * 263.81963 * 8 6 5 10 10 C 1.53006 * 109.47342 * 184.98051 * 9 8 6 11 11 C 1.50693 * 115.54950 * 185.82913 * 10 9 8 12 12 H 1.08003 * 119.99656 * 144.46862 * 11 10 9 13 13 C 1.37869 * 120.00450 * 324.47334 * 11 10 9 14 14 N 1.31519 * 120.00100 * 4.68518 * 13 11 10 15 15 Si 1.86800 * 120.00124 * 184.68821 * 13 11 10 16 16 H 1.48502 * 109.47474 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47583 * 119.99687 * 15 13 11 18 18 H 1.48505 * 109.47057 * 239.99563 * 15 13 11 19 19 C 1.53001 * 117.49518 * 40.16511 * 10 9 8 20 20 C 1.52996 * 117.49802 * 331.50536 * 10 9 8 21 21 C 1.54263 * 106.59805 * 0.02562 * 6 5 4 22 22 H 1.09007 * 109.46664 * 183.23127 * 1 2 3 23 23 H 1.08997 * 109.47050 * 303.22949 * 1 2 3 24 24 H 1.08998 * 109.47211 * 63.23242 * 1 2 3 25 25 H 1.08996 * 110.49062 * 37.64509 * 4 2 1 26 26 H 1.09005 * 110.48104 * 275.00469 * 4 2 1 27 27 H 1.09001 * 110.02830 * 217.10180 * 5 4 2 28 28 H 1.08994 * 110.03957 * 95.67151 * 5 4 2 29 29 H 1.08999 * 109.47632 * 304.98645 * 9 8 6 30 30 H 1.09007 * 109.46919 * 64.98672 * 9 8 6 31 31 H 0.97001 * 119.99899 * 185.00537 * 14 13 11 32 32 H 1.09006 * 117.50078 * 359.97438 * 19 10 9 33 33 H 1.08991 * 117.50101 * 145.01976 * 19 10 9 34 34 H 1.08999 * 117.49888 * 214.97697 * 20 10 9 35 35 H 1.08998 * 117.50136 * 359.97438 * 20 10 9 36 36 H 1.09002 * 110.48336 * 142.28411 * 21 6 5 37 37 H 1.08997 * 110.48474 * 264.92442 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0830 -0.7954 1.2086 5 6 3.4975 -1.2224 0.7653 6 6 3.4949 -1.2214 -0.7735 7 1 4.2320 -0.5109 -1.1476 8 8 3.7855 -2.5316 -1.2643 9 6 5.1599 -2.7358 -1.5979 10 6 5.3322 -4.1208 -2.2248 11 6 6.7538 -4.5351 -2.5049 12 1 7.0485 -5.5675 -2.3875 13 6 7.6782 -3.5963 -2.9110 14 7 7.3444 -2.3253 -2.9653 15 14 9.4048 -4.1295 -3.3842 16 1 9.5258 -5.6023 -3.2376 17 1 9.6717 -3.7484 -4.7945 18 1 10.3900 -3.4615 -2.4961 19 6 4.2532 -4.5936 -3.2011 20 6 4.3475 -5.2139 -1.8048 21 6 2.0791 -0.7933 -1.2115 22 1 -0.3633 -1.0261 0.0579 23 1 -0.3633 0.5631 0.8596 24 1 -0.3633 0.4628 -0.9175 25 1 1.4640 -1.6709 1.4045 26 1 2.1359 -0.1590 2.0920 27 1 3.7195 -2.2224 1.1377 28 1 4.2358 -0.5124 1.1379 29 1 5.4785 -1.9731 -2.3084 30 1 5.7669 -2.6676 -0.6951 31 1 7.9702 -1.6742 -3.3194 32 1 3.4203 -3.9180 -3.3965 33 1 4.5714 -5.2046 -4.0457 34 1 4.7278 -6.2327 -1.7315 35 1 3.5771 -4.9464 -1.0816 36 1 2.1293 -0.1558 -2.0942 37 1 1.4592 -1.6684 -1.4065 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721547737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:11 Heat of formation + Delta-G solvation = -44.273185 kcal Electronic energy + Delta-G solvation = -15872.949438 eV Core-core repulsion = 13422.197791 eV Total energy + Delta-G solvation = -2450.751647 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.61604 -36.79547 -34.66144 -32.17796 -30.39220 -28.15181 -26.00330 -24.95190 -24.27355 -20.98925 -19.87061 -19.85098 -18.88025 -16.31040 -16.07788 -15.29747 -14.65026 -14.24274 -13.68413 -13.57179 -13.36427 -12.94509 -12.77963 -12.11495 -11.81998 -11.32039 -11.26274 -11.13127 -10.96184 -10.74707 -10.55233 -10.51684 -10.40266 -10.35879 -10.06622 -9.84288 -9.35786 -8.97252 -8.63175 -8.49192 -7.92200 -6.03660 -4.14281 3.24477 3.32803 3.37558 4.33006 4.59586 4.79099 4.91694 5.03519 5.14631 5.47667 5.59925 5.63477 5.66446 5.76399 5.81328 5.93851 5.99102 6.10836 6.19975 6.24651 6.30406 6.38491 6.48646 6.60437 6.60998 6.63574 6.68082 6.91411 7.04841 7.19869 7.44736 7.55116 7.61941 7.95708 8.28104 8.60155 8.87612 9.47198 10.92961 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.042748 B = 0.006501 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.838450 B = 4305.719317 C = 4585.012958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.072 0.928 4 C -0.115 4.115 5 C -0.146 4.146 6 C 0.089 3.911 7 H 0.058 0.942 8 O -0.397 6.397 9 C 0.103 3.897 10 C 0.048 3.952 11 C -0.481 4.481 12 H 0.065 0.935 13 C 0.065 3.935 14 N -0.889 5.889 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.283 1.283 19 C -0.199 4.199 20 C -0.203 4.203 21 C -0.117 4.117 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.886 5.269 5.187 11.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.184 4.184 6 C 0.030 3.970 7 H 0.076 0.924 8 O -0.317 6.317 9 C 0.028 3.972 10 C 0.047 3.953 11 C -0.519 4.519 12 H 0.083 0.917 13 C -0.136 4.136 14 N -0.527 5.527 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.209 1.209 19 C -0.237 4.237 20 C -0.240 4.240 21 C -0.154 4.154 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.895 5.303 5.178 11.578 hybrid contribution 1.131 -0.087 -0.272 1.166 sum -7.764 5.216 4.906 10.562 Atomic orbital electron populations 1.21743 0.95180 1.01756 1.01185 1.22059 0.95171 0.98978 0.95512 0.90913 1.22352 0.96484 0.99335 0.97042 1.22675 0.96532 1.02043 0.97173 1.22497 0.95825 0.86542 0.92089 0.92413 1.87823 1.30183 1.29144 1.84514 1.22565 0.77489 0.98976 0.98185 1.19063 0.90248 0.89607 0.96359 1.20670 0.91773 0.94582 1.44833 0.91731 1.25044 0.98906 0.94726 0.94966 1.69833 1.36204 1.00978 1.45711 0.86399 0.83766 0.78900 0.78197 1.19631 1.20780 1.20891 1.22895 1.03825 1.04715 0.92258 1.22788 1.04984 0.98063 0.98189 1.22512 0.96155 0.99693 0.97080 0.92594 0.93021 0.92814 0.91671 0.92303 0.90868 0.92134 0.88393 0.95315 0.92793 0.91198 0.91155 0.91417 0.90634 0.91742 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.29 37.16 0.35 -1.14 16 2 C -0.10 -1.23 3.48 -88.64 -0.31 -1.54 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.11 -1.49 6.28 -25.07 -0.16 -1.64 16 5 C -0.15 -2.32 6.61 -25.61 -0.17 -2.49 16 6 C 0.09 1.62 3.41 -25.61 -0.09 1.53 16 7 H 0.06 1.08 7.70 -51.93 -0.40 0.68 16 8 O -0.40 -8.79 8.17 -35.23 -0.29 -9.08 16 9 C 0.10 2.58 4.82 37.16 0.18 2.76 16 10 C 0.05 1.25 2.46 -155.66 -0.38 0.87 16 11 C -0.48 -13.43 9.06 -34.45 -0.31 -13.74 16 12 H 0.06 1.79 7.82 -52.48 -0.41 1.38 16 13 C 0.07 1.77 5.40 -17.82 -0.10 1.68 16 14 N -0.89 -24.64 10.30 55.43 0.57 -24.07 16 15 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C -0.20 -4.84 9.67 -26.69 -0.26 -5.10 16 20 C -0.20 -4.81 9.63 -26.69 -0.26 -5.06 16 21 C -0.12 -1.77 6.01 -25.08 -0.15 -1.92 16 22 H 0.05 0.60 8.10 -51.92 -0.42 0.18 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.84 8.02 -51.93 -0.42 0.43 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.26 7.95 -51.93 -0.41 0.85 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.10 2.65 5.79 -51.93 -0.30 2.35 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 32 H 0.07 1.65 7.85 -51.93 -0.41 1.25 16 33 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 34 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 35 H 0.08 1.73 7.48 -51.93 -0.39 1.34 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.21 7.99 -51.93 -0.41 0.79 16 LS Contribution 295.75 15.07 4.46 4.46 Total: -1.00 -27.90 295.75 -8.45 -36.34 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.51 Total: 2.21 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -1.65 Total: -25.80 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.57 Total: -24.07 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.29 Total: -9.08 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.90 -8.45 -36.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721547737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.929 kcal (2) G-P(sol) polarization free energy of solvation -27.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds