Wall clock time and date at job start Mon Mar 30 2020 03:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.67024 * 2 1 4 4 C 1.54887 * 110.91470 * 123.35055 * 2 1 3 5 5 C 1.54264 * 104.19710 * 156.33328 * 4 2 1 6 6 C 1.53878 * 106.59593 * 336.38195 * 5 4 2 7 7 H 1.09004 * 110.02725 * 119.29032 * 6 5 4 8 8 O 1.42897 * 110.03347 * 240.66556 * 6 5 4 9 9 C 1.42893 * 114.00438 * 263.81963 * 8 6 5 10 10 C 1.53006 * 109.47342 * 184.98051 * 9 8 6 11 11 C 1.50693 * 115.54950 * 185.82913 * 10 9 8 12 12 H 1.08003 * 119.99656 * 144.46862 * 11 10 9 13 13 C 1.37869 * 120.00450 * 324.47334 * 11 10 9 14 14 N 1.31519 * 120.00100 * 4.68518 * 13 11 10 15 15 Si 1.86800 * 120.00124 * 184.68821 * 13 11 10 16 16 H 1.48502 * 109.47474 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47583 * 119.99687 * 15 13 11 18 18 H 1.48505 * 109.47057 * 239.99563 * 15 13 11 19 19 C 1.53001 * 117.49518 * 40.16511 * 10 9 8 20 20 C 1.52996 * 117.49802 * 331.50536 * 10 9 8 21 21 C 1.54263 * 106.59805 * 0.02562 * 6 5 4 22 22 H 1.09007 * 109.46664 * 183.23127 * 1 2 3 23 23 H 1.08997 * 109.47050 * 303.22949 * 1 2 3 24 24 H 1.08998 * 109.47211 * 63.23242 * 1 2 3 25 25 H 1.08996 * 110.49062 * 37.64509 * 4 2 1 26 26 H 1.09005 * 110.48104 * 275.00469 * 4 2 1 27 27 H 1.09001 * 110.02830 * 217.10180 * 5 4 2 28 28 H 1.08994 * 110.03957 * 95.67151 * 5 4 2 29 29 H 1.08999 * 109.47632 * 304.98645 * 9 8 6 30 30 H 1.09007 * 109.46919 * 64.98672 * 9 8 6 31 31 H 0.97001 * 119.99899 * 185.00537 * 14 13 11 32 32 H 1.09006 * 117.50078 * 359.97438 * 19 10 9 33 33 H 1.08991 * 117.50101 * 145.01976 * 19 10 9 34 34 H 1.08999 * 117.49888 * 214.97697 * 20 10 9 35 35 H 1.08998 * 117.50136 * 359.97438 * 20 10 9 36 36 H 1.09002 * 110.48336 * 142.28411 * 21 6 5 37 37 H 1.08997 * 110.48474 * 264.92442 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0830 -0.7954 1.2086 5 6 3.4975 -1.2224 0.7653 6 6 3.4949 -1.2214 -0.7735 7 1 4.2320 -0.5109 -1.1476 8 8 3.7855 -2.5316 -1.2643 9 6 5.1599 -2.7358 -1.5979 10 6 5.3322 -4.1208 -2.2248 11 6 6.7538 -4.5351 -2.5049 12 1 7.0485 -5.5675 -2.3875 13 6 7.6782 -3.5963 -2.9110 14 7 7.3444 -2.3253 -2.9653 15 14 9.4048 -4.1295 -3.3842 16 1 9.5258 -5.6023 -3.2376 17 1 9.6717 -3.7484 -4.7945 18 1 10.3900 -3.4615 -2.4961 19 6 4.2532 -4.5936 -3.2011 20 6 4.3475 -5.2139 -1.8048 21 6 2.0791 -0.7933 -1.2115 22 1 -0.3633 -1.0261 0.0579 23 1 -0.3633 0.5631 0.8596 24 1 -0.3633 0.4628 -0.9175 25 1 1.4640 -1.6709 1.4045 26 1 2.1359 -0.1590 2.0920 27 1 3.7195 -2.2224 1.1377 28 1 4.2358 -0.5124 1.1379 29 1 5.4785 -1.9731 -2.3084 30 1 5.7669 -2.6676 -0.6951 31 1 7.9702 -1.6742 -3.3194 32 1 3.4203 -3.9180 -3.3965 33 1 4.5714 -5.2046 -4.0457 34 1 4.7278 -6.2327 -1.7315 35 1 3.5771 -4.9464 -1.0816 36 1 2.1293 -0.1558 -2.0942 37 1 1.4592 -1.6684 -1.4065 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721547737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:11 Heat of formation + Delta-G solvation = -57.842340 kcal Electronic energy + Delta-G solvation = -15873.537841 eV Core-core repulsion = 13422.197791 eV Total energy + Delta-G solvation = -2451.340049 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.07707 -38.51281 -36.32255 -34.25396 -31.52071 -29.44953 -28.01683 -26.78478 -25.50503 -22.93926 -21.28969 -21.10177 -20.66900 -18.32094 -17.58463 -16.82395 -16.41601 -15.92764 -15.36360 -15.28477 -14.55579 -14.43553 -13.95933 -13.62559 -13.24675 -13.16805 -12.97505 -12.74354 -12.39068 -12.36777 -12.23211 -12.00865 -11.81980 -11.58540 -11.40811 -11.31174 -11.25056 -10.91060 -10.63328 -10.37837 -9.88410 -8.09149 -6.28459 1.40713 1.42747 1.55041 2.38444 2.94018 3.06878 3.63671 3.64676 3.74204 4.03347 4.29549 4.38625 4.49568 4.52484 4.62866 4.65600 4.68313 4.72013 4.77287 4.91840 4.98061 4.99681 5.07210 5.11579 5.13726 5.18093 5.26668 5.34419 5.37383 5.44092 5.57418 5.58550 5.61785 5.89625 6.27632 6.67419 6.83647 7.35651 8.86242 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.042748 B = 0.006501 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.838450 B = 4305.719317 C = 4585.012958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.084 0.916 4 C -0.108 4.108 5 C -0.145 4.145 6 C 0.074 3.926 7 H 0.044 0.956 8 O -0.405 6.405 9 C 0.127 3.873 10 C 0.010 3.990 11 C -0.509 4.509 12 H 0.059 0.941 13 C 0.021 3.979 14 N -0.910 5.910 15 Si 0.966 3.034 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.278 1.278 19 C -0.191 4.191 20 C -0.184 4.184 21 C -0.113 4.113 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.005 0.995 31 H 0.265 0.735 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.639 5.713 5.660 12.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.102 0.898 4 C -0.145 4.145 5 C -0.183 4.183 6 C 0.016 3.984 7 H 0.062 0.938 8 O -0.325 6.325 9 C 0.051 3.949 10 C 0.010 3.990 11 C -0.546 4.546 12 H 0.077 0.923 13 C -0.179 4.179 14 N -0.549 5.549 15 Si 0.791 3.209 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.203 1.203 19 C -0.229 4.229 20 C -0.221 4.221 21 C -0.151 4.151 22 H 0.071 0.929 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.024 0.976 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.667 5.750 5.657 12.590 hybrid contribution 1.333 -0.195 -0.403 1.406 sum -8.334 5.554 5.254 11.310 Atomic orbital electron populations 1.21718 0.93303 1.02035 1.02458 1.22057 0.96635 0.98843 0.93370 0.89759 1.22343 0.94136 0.99904 0.98142 1.22636 0.99080 1.01322 0.95273 1.22879 0.97321 0.84415 0.93804 0.93799 1.87784 1.28214 1.31649 1.84895 1.22030 0.78645 0.97967 0.96266 1.19268 0.90459 0.90941 0.98361 1.20912 0.93108 0.94605 1.46008 0.92303 1.25819 1.02640 0.94711 0.94703 1.69972 1.37449 1.01741 1.45766 0.85378 0.78944 0.78585 0.77999 1.19219 1.20125 1.20337 1.22841 1.02994 1.04547 0.92528 1.22753 1.03852 0.97686 0.97785 1.22515 0.93976 0.99856 0.98762 0.92918 0.91152 0.92114 0.91569 0.89914 0.92747 0.91460 0.90691 0.97624 0.92569 0.90815 0.91045 0.90596 0.89893 0.91323 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.29 71.98 0.67 -1.81 16 2 C -0.09 -2.03 3.48 -9.51 -0.03 -2.07 16 3 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 4 C -0.11 -2.56 6.28 31.67 0.20 -2.36 16 5 C -0.15 -4.54 6.61 31.32 0.21 -4.33 16 6 C 0.07 2.70 3.41 31.32 0.11 2.80 16 7 H 0.04 1.70 7.70 -2.39 -0.02 1.68 16 8 O -0.41 -18.30 8.17 -148.98 -1.22 -19.51 16 9 C 0.13 6.56 4.82 71.98 0.35 6.90 16 10 C 0.01 0.54 2.46 -52.93 -0.13 0.41 16 11 C -0.51 -28.77 9.06 25.60 0.23 -28.54 16 12 H 0.06 3.29 7.82 -2.91 -0.02 3.27 16 13 C 0.02 1.13 5.40 84.65 0.46 1.59 16 14 N -0.91 -51.35 10.30 21.45 0.22 -51.13 16 15 Si 0.97 43.10 29.54 68.60 2.03 45.12 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 17 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 19 C -0.19 -9.29 9.67 30.62 0.30 -9.00 16 20 C -0.18 -8.63 9.63 30.62 0.29 -8.33 16 21 C -0.11 -3.34 6.01 31.66 0.19 -3.15 16 22 H 0.05 0.99 8.10 -2.38 -0.02 0.97 16 23 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.57 8.02 -2.39 -0.02 1.55 16 26 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.05 1.89 7.95 -2.39 -0.02 1.87 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.08 4.22 5.79 -2.39 -0.01 4.21 16 30 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 31 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 32 H 0.07 3.48 7.85 -2.38 -0.02 3.46 16 33 H 0.07 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 35 H 0.08 3.74 7.48 -2.39 -0.02 3.72 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 2.10 7.99 -2.39 -0.02 2.08 16 Total: -1.00 -59.55 295.75 4.87 -54.68 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 1.01 Total: 18.72 kcal Atomic # 6 Polarization: -50.71 SS G_CDS: 2.84 Total: -47.88 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.22 Total: -51.13 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -1.22 Total: -19.51 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -59.55 4.87 -54.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721547737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.159 kcal (2) G-P(sol) polarization free energy of solvation -59.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds