Wall clock time and date at job start Mon Mar 30 2020 03:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00344 * 2 1 4 4 H 1.48498 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47032 * 300.00164 * 3 2 1 6 6 H 1.48505 * 109.46760 * 60.00012 * 3 2 1 7 7 C 1.37879 * 119.99541 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99590 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00497 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47453 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.47268 * 179.97438 * 10 9 7 12 12 C 1.46776 * 110.99663 * 66.04757 * 11 10 9 13 13 C 1.52076 * 112.39517 * 171.89163 * 12 11 10 14 14 N 1.47081 * 110.68757 * 62.54190 * 13 12 11 15 15 C 1.44725 * 116.26786 * 35.53586 * 14 13 12 16 16 C 1.50965 * 111.96688 * 294.56902 * 15 14 13 17 17 C 1.46959 * 110.99965 * 302.56853 * 11 10 9 18 18 C 1.52132 * 110.42261 * 217.92529 * 17 11 10 19 19 C 1.47001 * 109.98960 * 265.64264 * 14 13 12 20 20 H 0.97003 * 119.99847 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.46952 * 59.99296 * 9 7 2 22 22 H 1.08999 * 109.46799 * 300.00063 * 9 7 2 23 23 H 1.08998 * 109.46905 * 60.00201 * 10 9 7 24 24 H 1.08999 * 109.47456 * 300.00011 * 10 9 7 25 25 H 1.09006 * 108.89704 * 51.14157 * 12 11 10 26 26 H 1.09001 * 108.89985 * 292.64894 * 12 11 10 27 27 H 1.09002 * 109.23156 * 182.85056 * 13 12 11 28 28 H 1.08994 * 109.23067 * 302.22951 * 13 12 11 29 29 H 1.09007 * 108.91531 * 54.77117 * 15 14 13 30 30 H 1.08992 * 108.92810 * 173.33514 * 15 14 13 31 31 H 1.08994 * 107.80404 * 223.74521 * 16 15 14 32 32 H 1.08995 * 109.53605 * 105.40835 * 16 15 14 33 33 H 1.08999 * 108.01321 * 335.93214 * 17 11 10 34 34 H 1.09005 * 108.69640 * 165.38410 * 18 17 11 35 35 H 1.08996 * 108.59882 * 47.33520 * 18 17 11 36 36 H 1.08995 * 109.05614 * 201.06632 * 19 14 13 37 37 H 1.08992 * 109.05001 * 319.98003 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5105 -4.9343 0.0012 12 6 0.7654 -5.1120 -1.2508 13 6 0.1538 -6.4993 -1.3693 14 7 -0.8270 -6.7280 -0.2974 15 6 -1.6120 -5.5817 0.1078 16 6 -0.7597 -4.5097 0.7431 17 6 0.6080 -5.0208 1.1577 18 6 0.5845 -6.4390 1.7079 19 6 -0.1841 -7.4103 0.8349 20 1 -0.4850 0.8401 0.0004 21 1 0.6245 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.8717 -3.6044 0.8905 24 1 2.8718 -3.6045 -0.8894 25 1 1.4421 -4.9517 -2.0902 26 1 -0.0317 -4.3698 -1.2957 27 1 -0.3421 -6.5918 -2.3355 28 1 0.9437 -7.2471 -1.2987 29 1 -2.1036 -5.1620 -0.7699 30 1 -2.3740 -5.9073 0.8158 31 1 -1.2848 -4.1464 1.6264 32 1 -0.6320 -3.6835 0.0438 33 1 0.9934 -4.3621 1.9360 34 1 0.1281 -6.4223 2.6977 35 1 1.6113 -6.7919 1.8032 36 1 -0.9497 -7.9003 1.4364 37 1 0.5029 -8.1649 0.4520 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722791644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:44 Heat of formation + Delta-G solvation = 16.454138 kcal Electronic energy + Delta-G solvation = -16683.377976 eV Core-core repulsion = 14267.552415 eV Total energy + Delta-G solvation = -2415.825561 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.55134 -35.74413 -32.85850 -32.43685 -31.00330 -29.69453 -26.90656 -24.71228 -23.91857 -22.96795 -21.12846 -19.41481 -17.98158 -16.86642 -16.20972 -15.57370 -14.98745 -14.52700 -14.07628 -13.42327 -13.08548 -12.93366 -12.76989 -12.58604 -12.07808 -11.97373 -11.82843 -11.34812 -11.02389 -10.89297 -10.69811 -10.48205 -10.44947 -10.20396 -10.05727 -9.81300 -9.62897 -9.02429 -8.40429 -7.85357 -7.49858 -6.05993 -4.08862 3.26818 3.34635 3.38824 4.22386 4.39194 4.50181 5.11213 5.22846 5.29220 5.31015 5.45506 5.52781 5.63332 5.68516 5.73113 5.78595 6.01886 6.12943 6.16792 6.25342 6.28001 6.36126 6.41260 6.41465 6.48448 6.61561 6.85051 6.93817 7.39361 7.48005 7.51884 7.60203 7.68858 7.85174 7.95431 8.38410 8.98003 9.55699 11.04739 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.048963 B = 0.007271 C = 0.007103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.723594 B = 3849.830203 C = 3941.059046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C -0.010 4.010 10 C 0.057 3.943 11 N -0.535 5.535 12 C 0.014 3.986 13 C 0.072 3.928 14 N -0.559 5.559 15 C 0.079 3.921 16 C -0.191 4.191 17 C 0.091 3.909 18 C -0.135 4.135 19 C 0.070 3.930 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.023 0.977 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.257 -12.417 0.576 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.048 4.048 10 C -0.070 4.070 11 N -0.259 5.259 12 C -0.115 4.115 13 C -0.055 4.055 14 N -0.281 5.281 15 C -0.049 4.049 16 C -0.231 4.231 17 C -0.018 4.018 18 C -0.175 4.175 19 C -0.059 4.059 20 H 0.069 0.931 21 H 0.034 0.966 22 H 0.042 0.958 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.372 -12.976 0.422 13.056 hybrid contribution 0.411 2.427 0.335 2.485 sum -0.961 -10.549 0.756 10.620 Atomic orbital electron populations 1.69965 1.06044 1.26517 1.50797 1.25016 0.94850 0.99283 0.95200 0.86543 0.80163 0.83762 0.77593 1.19712 1.21004 1.21004 1.21231 0.93078 0.91011 1.50656 0.92625 1.19816 0.94968 0.92713 0.97253 1.22391 0.96791 0.86913 1.00920 1.62474 1.26686 1.35363 1.01371 1.22535 0.98224 0.97688 0.93097 1.21980 0.93128 0.96297 0.94123 1.60118 1.28038 1.29155 1.10744 1.21042 0.95114 0.89172 0.99556 1.22399 0.97039 1.00796 1.02833 1.20988 0.91295 0.95472 0.94044 1.21599 1.01344 0.95672 0.98854 1.21778 0.96647 0.95711 0.91725 0.93063 0.96597 0.95849 0.92068 0.92140 0.91366 0.92972 0.91070 0.90994 0.91493 0.91504 0.92304 0.88384 0.91070 0.92463 0.91382 0.91909 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C -0.01 -0.24 3.31 -27.89 -0.09 -0.33 16 10 C 0.06 1.20 5.07 -3.82 -0.02 1.18 16 11 N -0.54 -9.82 4.74 -228.57 -1.08 -10.91 16 12 C 0.01 0.24 4.51 -4.36 -0.02 0.22 16 13 C 0.07 1.05 6.18 -4.20 -0.03 1.02 16 14 N -0.56 -8.12 4.71 -239.02 -1.13 -9.25 16 15 C 0.08 1.21 5.41 -6.01 -0.03 1.18 16 16 C -0.19 -3.39 4.13 -28.37 -0.12 -3.51 16 17 C 0.09 1.60 2.13 -68.74 -0.15 1.45 16 18 C -0.13 -1.94 5.65 -27.91 -0.16 -2.09 16 19 C 0.07 0.92 5.92 -4.51 -0.03 0.89 16 20 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 21 H 0.02 0.43 6.25 -51.93 -0.32 0.11 16 22 H 0.02 0.62 5.76 -51.93 -0.30 0.33 16 23 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 24 H 0.06 1.27 8.01 -51.93 -0.42 0.86 16 25 H 0.07 1.16 7.98 -51.93 -0.41 0.74 16 26 H 0.05 1.01 4.14 -51.93 -0.22 0.80 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.99 7.24 -51.93 -0.38 0.61 16 29 H 0.07 1.03 8.08 -51.92 -0.42 0.61 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.10 2.07 3.69 -51.93 -0.19 1.88 16 33 H 0.07 1.38 7.10 -51.93 -0.37 1.01 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.83 7.40 -51.93 -0.38 0.45 16 LS Contribution 269.13 15.07 4.06 4.06 Total: -1.00 -29.04 269.13 -9.39 -38.44 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.91 Total: 0.27 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -1.05 Total: -13.40 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -1.47 Total: -45.98 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.04 -9.39 -38.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722791644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.892 kcal (2) G-P(sol) polarization free energy of solvation -29.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds