Wall clock time and date at job start Mon Mar 30 2020 03:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00344 * 2 1 4 4 H 1.48498 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47032 * 300.00164 * 3 2 1 6 6 H 1.48505 * 109.46760 * 60.00012 * 3 2 1 7 7 C 1.37879 * 119.99541 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99590 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00497 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47453 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.47268 * 179.97438 * 10 9 7 12 12 C 1.46776 * 110.99663 * 66.04757 * 11 10 9 13 13 C 1.52076 * 112.39517 * 171.89163 * 12 11 10 14 14 N 1.47081 * 110.68757 * 62.54190 * 13 12 11 15 15 C 1.44725 * 116.26786 * 35.53586 * 14 13 12 16 16 C 1.50965 * 111.96688 * 294.56902 * 15 14 13 17 17 C 1.46959 * 110.99965 * 302.56853 * 11 10 9 18 18 C 1.52132 * 110.42261 * 217.92529 * 17 11 10 19 19 C 1.47001 * 109.98960 * 265.64264 * 14 13 12 20 20 H 0.97003 * 119.99847 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.46952 * 59.99296 * 9 7 2 22 22 H 1.08999 * 109.46799 * 300.00063 * 9 7 2 23 23 H 1.08998 * 109.46905 * 60.00201 * 10 9 7 24 24 H 1.08999 * 109.47456 * 300.00011 * 10 9 7 25 25 H 1.09006 * 108.89704 * 51.14157 * 12 11 10 26 26 H 1.09001 * 108.89985 * 292.64894 * 12 11 10 27 27 H 1.09002 * 109.23156 * 182.85056 * 13 12 11 28 28 H 1.08994 * 109.23067 * 302.22951 * 13 12 11 29 29 H 1.09007 * 108.91531 * 54.77117 * 15 14 13 30 30 H 1.08992 * 108.92810 * 173.33514 * 15 14 13 31 31 H 1.08994 * 107.80404 * 223.74521 * 16 15 14 32 32 H 1.08995 * 109.53605 * 105.40835 * 16 15 14 33 33 H 1.08999 * 108.01321 * 335.93214 * 17 11 10 34 34 H 1.09005 * 108.69640 * 165.38410 * 18 17 11 35 35 H 1.08996 * 108.59882 * 47.33520 * 18 17 11 36 36 H 1.08995 * 109.05614 * 201.06632 * 19 14 13 37 37 H 1.08992 * 109.05001 * 319.98003 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5105 -4.9343 0.0012 12 6 0.7654 -5.1120 -1.2508 13 6 0.1538 -6.4993 -1.3693 14 7 -0.8270 -6.7280 -0.2974 15 6 -1.6120 -5.5817 0.1078 16 6 -0.7597 -4.5097 0.7431 17 6 0.6080 -5.0208 1.1577 18 6 0.5845 -6.4390 1.7079 19 6 -0.1841 -7.4103 0.8349 20 1 -0.4850 0.8401 0.0004 21 1 0.6245 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.8717 -3.6044 0.8905 24 1 2.8718 -3.6045 -0.8894 25 1 1.4421 -4.9517 -2.0902 26 1 -0.0317 -4.3698 -1.2957 27 1 -0.3421 -6.5918 -2.3355 28 1 0.9437 -7.2471 -1.2987 29 1 -2.1036 -5.1620 -0.7699 30 1 -2.3740 -5.9073 0.8158 31 1 -1.2848 -4.1464 1.6264 32 1 -0.6320 -3.6835 0.0438 33 1 0.9934 -4.3621 1.9360 34 1 0.1281 -6.4223 2.6977 35 1 1.6113 -6.7919 1.8032 36 1 -0.9497 -7.9003 1.4364 37 1 0.5029 -8.1649 0.4520 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722791644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:43 Heat of formation + Delta-G solvation = -3.947814 kcal Electronic energy + Delta-G solvation = -16684.262671 eV Core-core repulsion = 14267.552415 eV Total energy + Delta-G solvation = -2416.710256 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.91042 -37.26908 -34.93131 -33.72257 -32.26710 -31.54411 -28.53224 -26.02312 -25.83753 -24.21766 -22.84493 -20.84529 -19.30742 -18.79546 -17.68387 -17.16283 -16.54958 -16.17249 -15.59320 -14.96732 -14.57791 -14.39829 -14.24924 -13.96688 -13.74379 -13.46147 -13.29181 -13.03479 -12.87335 -12.54805 -12.36230 -11.98865 -11.89179 -11.73813 -11.59313 -11.40945 -11.25893 -10.93868 -10.59869 -9.17349 -9.01129 -8.24907 -6.37315 1.34924 1.35469 1.48706 2.35487 2.96591 3.07034 3.10093 3.80444 3.89383 4.11164 4.17260 4.22026 4.35711 4.38012 4.42970 4.46076 4.61613 4.73038 4.82112 4.84004 4.94850 5.00579 5.04463 5.12929 5.15210 5.16841 5.20283 5.40688 5.51811 5.53797 5.70458 6.00263 6.22281 6.26531 6.31773 6.40902 6.79807 7.32090 8.85281 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.048963 B = 0.007271 C = 0.007103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.723594 B = 3849.830203 C = 3941.059046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.008 3.992 10 C 0.069 3.931 11 N -0.526 5.526 12 C 0.014 3.986 13 C 0.078 3.922 14 N -0.556 5.556 15 C 0.087 3.913 16 C -0.185 4.185 17 C 0.090 3.910 18 C -0.128 4.128 19 C 0.069 3.931 20 H 0.263 0.737 21 H -0.011 1.011 22 H 0.000 1.000 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.025 0.975 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.736 -13.779 0.695 13.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.030 4.030 10 C -0.059 4.059 11 N -0.249 5.249 12 C -0.115 4.115 13 C -0.049 4.049 14 N -0.278 5.278 15 C -0.042 4.042 16 C -0.225 4.225 17 C -0.019 4.019 18 C -0.167 4.167 19 C -0.059 4.059 20 H 0.072 0.928 21 H 0.007 0.993 22 H 0.018 0.982 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.847 -14.363 0.541 14.398 hybrid contribution 0.220 2.867 0.304 2.891 sum -0.627 -11.496 0.845 11.544 Atomic orbital electron populations 1.70099 1.07710 1.27621 1.51476 1.25944 0.95756 1.03250 0.94592 0.85420 0.79115 0.78847 0.77805 1.18638 1.20345 1.20357 1.21687 0.93506 0.92502 1.50774 0.92372 1.19599 0.94896 0.93750 0.94793 1.22156 0.95992 0.86895 1.00826 1.62588 1.27075 1.32858 1.02347 1.22618 0.97343 0.99140 0.92422 1.22019 0.93542 0.94359 0.95016 1.60186 1.28038 1.28243 1.11321 1.20974 0.95032 0.88644 0.99547 1.22304 0.97942 1.00609 1.01649 1.21076 0.90517 0.97420 0.92898 1.21551 1.02206 0.93332 0.99638 1.21912 0.97383 0.95346 0.91250 0.92848 0.99268 0.98154 0.92171 0.92001 0.91367 0.95702 0.89542 0.89392 0.92067 0.89524 0.92983 0.92468 0.93761 0.91061 0.90925 0.89882 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.55 -31.47 9.11 25.60 0.23 -31.24 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.01 0.41 3.31 29.85 0.10 0.51 16 10 C 0.07 3.00 5.07 86.30 0.44 3.43 16 11 N -0.53 -19.29 4.74 -877.06 -4.16 -23.44 16 12 C 0.01 0.49 4.51 86.02 0.39 0.88 16 13 C 0.08 2.09 6.18 85.96 0.53 2.63 16 14 N -0.56 -14.77 4.71 -910.13 -4.29 -19.06 16 15 C 0.09 2.56 5.41 86.05 0.47 3.02 16 16 C -0.18 -6.75 4.13 29.53 0.12 -6.62 16 17 C 0.09 3.15 2.13 44.22 0.09 3.25 16 18 C -0.13 -3.37 5.65 29.83 0.17 -3.21 16 19 C 0.07 1.57 5.92 85.80 0.51 2.08 16 20 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 21 H -0.01 -0.63 6.25 -2.39 -0.01 -0.64 16 22 H 0.00 0.01 5.76 -2.39 -0.01 0.00 16 23 H 0.06 2.60 8.10 -2.39 -0.02 2.58 16 24 H 0.06 2.64 8.01 -2.39 -0.02 2.62 16 25 H 0.07 2.31 7.98 -2.38 -0.02 2.29 16 26 H 0.02 1.00 4.14 -2.39 -0.01 0.99 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.09 2.12 7.24 -2.39 -0.02 2.10 16 29 H 0.06 1.87 8.08 -2.38 -0.02 1.85 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 2.58 3.69 -2.39 -0.01 2.57 16 33 H 0.04 1.76 7.10 -2.39 -0.02 1.75 16 34 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 1.69 7.40 -2.39 -0.02 1.68 16 Total: -1.00 -63.31 269.13 -1.59 -64.90 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.04 Total: 11.94 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 3.51 Total: -24.65 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -8.16 Total: -98.94 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -63.31 -1.59 -64.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722791644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.952 kcal (2) G-P(sol) polarization free energy of solvation -63.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds