Wall clock time and date at job start Mon Mar 30 2020 02:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47335 * 2 1 4 4 C 1.53001 * 109.46884 * 240.00511 * 2 1 3 5 5 C 1.52999 * 109.47412 * 120.00572 * 2 1 3 6 6 H 1.08992 * 109.41111 * 308.58979 * 5 2 1 7 7 C 1.52960 * 109.35484 * 188.76652 * 5 2 1 8 8 C 1.53236 * 109.40236 * 176.33295 * 7 5 2 9 9 C 1.51265 * 108.53766 * 54.62271 * 8 7 5 10 10 O 1.20766 * 120.84477 * 128.63849 * 9 8 7 11 11 C 1.51265 * 118.31373 * 308.66555 * 9 8 7 12 12 C 1.52954 * 109.41307 * 68.44923 * 5 2 1 13 13 H 1.09000 * 109.48764 * 63.63812 * 12 5 2 14 14 C 1.50702 * 109.48218 * 303.61157 * 12 5 2 15 15 H 1.08003 * 120.00012 * 323.61261 * 14 12 5 16 16 C 1.37884 * 119.99973 * 143.60982 * 14 12 5 17 17 N 1.31506 * 119.99878 * 15.34120 * 16 14 12 18 18 Si 1.86799 * 119.99817 * 195.34108 * 16 14 12 19 19 H 1.48496 * 109.47447 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46840 * 240.00132 * 18 16 14 21 21 H 1.48492 * 109.47100 * 120.00395 * 18 16 14 22 22 H 1.09002 * 109.47017 * 274.64497 * 1 2 3 23 23 H 1.09005 * 109.47504 * 34.64562 * 1 2 3 24 24 H 1.09002 * 109.47368 * 154.64927 * 1 2 3 25 25 H 1.09006 * 109.47812 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47941 * 300.00632 * 3 2 1 27 27 H 1.08996 * 109.47193 * 60.00332 * 3 2 1 28 28 H 1.08997 * 109.47223 * 299.99995 * 4 2 1 29 29 H 1.09001 * 109.47346 * 59.99676 * 4 2 1 30 30 H 1.09001 * 109.47483 * 180.02562 * 4 2 1 31 31 H 1.09003 * 109.48185 * 296.30520 * 7 5 2 32 32 H 1.08993 * 109.48438 * 56.34796 * 7 5 2 33 33 H 1.08994 * 109.62486 * 174.34267 * 8 7 5 34 34 H 1.09000 * 109.62064 * 294.71585 * 8 7 5 35 35 H 1.09003 * 109.61722 * 291.61898 * 11 9 8 36 36 H 1.08999 * 109.64426 * 171.04373 * 11 9 8 37 37 H 0.97001 * 120.00257 * 355.90982 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7214 1.2491 6 1 1.5563 -0.3032 2.1318 7 6 3.5537 -0.5321 1.3612 8 6 4.0525 -1.1758 2.6593 9 6 3.6011 -2.6193 2.6846 10 8 4.3879 -3.5105 2.8974 11 6 2.1393 -2.9184 2.4360 12 6 1.7099 -2.2113 1.1462 13 1 2.2428 -2.6442 0.2996 14 6 0.2261 -2.3848 0.9480 15 1 -0.4664 -1.7220 1.4455 16 6 -0.2475 -3.3898 0.1313 17 7 0.5480 -4.3724 -0.2309 18 14 -2.0189 -3.3556 -0.4604 19 1 -2.6998 -2.1538 0.0846 20 1 -2.7211 -4.5772 0.0087 21 1 -2.0443 -3.3092 -1.9444 22 1 -0.3633 0.0832 1.0243 23 1 -0.3634 0.8455 -0.5842 24 1 -0.3634 -0.9287 -0.4400 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9562 0.8900 28 1 1.6765 -1.7488 -1.2494 29 1 1.6765 -0.2073 -2.1393 30 1 3.1299 -0.7216 -1.2492 31 1 4.0432 -1.0048 0.5097 32 1 3.7873 0.5325 1.3702 33 1 5.1409 -1.1318 2.6951 34 1 3.6363 -0.6441 3.5150 35 1 1.5433 -2.5504 3.2711 36 1 1.9985 -3.9939 2.3281 37 1 1.4830 -4.3597 0.0270 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725353320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:01 Heat of formation + Delta-G solvation = -67.297332 kcal Electronic energy + Delta-G solvation = -16917.374434 eV Core-core repulsion = 14465.624385 eV Total energy + Delta-G solvation = -2451.750048 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.64216 -37.78024 -33.79524 -33.10574 -29.98858 -27.31621 -26.91571 -26.62997 -24.29911 -22.00142 -20.92351 -18.60236 -17.73745 -16.88951 -14.99487 -14.74121 -14.37583 -14.07826 -13.88805 -13.67715 -13.23149 -13.10322 -12.95898 -11.94048 -11.60106 -11.53438 -11.35031 -11.27285 -10.97806 -10.87797 -10.73063 -10.44811 -10.36615 -10.19174 -10.06568 -9.62070 -9.42423 -9.23993 -8.89192 -8.53305 -8.00847 -6.40489 -4.00159 2.60192 3.41270 3.41929 3.55333 4.46868 4.81084 5.25171 5.27327 5.34801 5.51188 5.63110 5.64798 5.76805 5.96438 6.12315 6.18084 6.19210 6.26122 6.32525 6.39684 6.42608 6.44253 6.49737 6.68378 6.75696 6.78237 6.87713 6.95598 7.05671 7.20386 7.37887 7.48130 7.58971 8.15155 8.18075 8.44711 8.83397 9.60267 10.98120 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.023137 B = 0.013519 C = 0.009568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.894396 B = 2070.677102 C = 2925.682467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.042 4.042 3 C -0.145 4.145 4 C -0.141 4.141 5 C -0.068 4.068 6 H 0.058 0.942 7 C -0.115 4.115 8 C -0.168 4.168 9 C 0.356 3.644 10 O -0.486 6.486 11 C -0.159 4.159 12 C 0.043 3.957 13 H 0.044 0.956 14 C -0.583 4.583 15 H 0.060 0.940 16 C 0.023 3.977 17 N -0.905 5.905 18 Si 1.055 2.945 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.286 1.286 22 H 0.047 0.953 23 H 0.016 0.984 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.017 9.644 1.298 9.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.042 4.042 3 C -0.202 4.202 4 C -0.198 4.198 5 C -0.087 4.087 6 H 0.076 0.924 7 C -0.153 4.153 8 C -0.206 4.206 9 C 0.234 3.766 10 O -0.362 6.362 11 C -0.197 4.197 12 C 0.024 3.976 13 H 0.062 0.938 14 C -0.621 4.621 15 H 0.078 0.922 16 C -0.182 4.182 17 N -0.541 5.541 18 Si 0.884 3.116 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.212 1.212 22 H 0.066 0.934 23 H 0.035 0.965 24 H 0.108 0.892 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.302 8.328 0.526 8.446 hybrid contribution 1.133 0.932 0.984 1.766 sum 2.435 9.260 1.509 9.693 Atomic orbital electron populations 1.22228 0.94157 1.01219 1.00779 1.20195 0.96354 0.92615 0.95047 1.22062 1.00309 0.97238 1.00565 1.21962 0.99168 1.02427 0.96243 1.21310 0.91832 0.98717 0.96802 0.92371 1.21787 0.98179 0.99819 0.95471 1.22292 1.01496 0.96210 1.00583 1.25514 0.92432 0.89988 0.68644 1.90310 1.58192 1.50263 1.37462 1.22692 0.90852 1.03361 1.02826 1.18993 0.97649 0.89454 0.91535 0.93824 1.21895 0.90681 1.18524 1.30967 0.92196 1.25647 1.05677 0.91931 0.94951 1.70748 1.07227 1.28632 1.47476 0.83753 0.75244 0.75794 0.76794 1.21080 1.21641 1.21192 0.93422 0.96469 0.89243 0.93168 0.93660 0.93449 0.90384 0.94336 0.94320 0.92059 0.91557 0.90849 0.89266 0.90069 0.90623 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 7.17 37.15 0.27 -2.11 16 2 C -0.04 -0.74 0.55 -154.51 -0.08 -0.82 16 3 C -0.14 -2.10 7.73 37.15 0.29 -1.81 16 4 C -0.14 -2.59 7.54 37.16 0.28 -2.31 16 5 C -0.07 -1.23 1.19 -90.66 -0.11 -1.34 16 6 H 0.06 1.06 7.91 -51.93 -0.41 0.65 16 7 C -0.12 -1.84 4.48 -26.63 -0.12 -1.96 16 8 C -0.17 -2.67 6.17 -27.48 -0.17 -2.84 16 9 C 0.36 7.09 6.72 -28.48 -0.19 6.89 16 10 O -0.49 -11.06 17.89 5.99 0.11 -10.96 16 11 C -0.16 -3.39 5.44 -27.49 -0.15 -3.54 16 12 C 0.04 0.93 0.82 -91.67 -0.07 0.85 16 13 H 0.04 1.06 5.22 -51.93 -0.27 0.79 16 14 C -0.58 -13.99 4.61 -34.44 -0.16 -14.15 16 15 H 0.06 1.45 6.04 -52.48 -0.32 1.13 16 16 C 0.02 0.60 5.15 -17.82 -0.09 0.51 16 17 N -0.91 -25.47 13.59 55.43 0.75 -24.71 16 18 Si 1.06 23.59 28.80 -169.99 -4.90 18.70 16 19 H -0.29 -5.99 7.11 56.52 0.40 -5.58 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 22 H 0.05 0.90 6.63 -51.93 -0.34 0.55 16 23 H 0.02 0.28 7.89 -51.93 -0.41 -0.13 16 24 H 0.09 1.89 4.34 -51.93 -0.23 1.67 16 25 H 0.05 0.68 6.23 -51.93 -0.32 0.35 16 26 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.70 5.98 -51.93 -0.31 1.39 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.66 6.77 -51.93 -0.35 0.30 16 31 H 0.06 1.03 6.85 -51.93 -0.36 0.68 16 32 H 0.07 0.92 6.08 -51.93 -0.32 0.60 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 36 H 0.08 1.81 8.09 -51.93 -0.42 1.39 16 37 H 0.27 7.72 6.81 -40.82 -0.28 7.44 16 LS Contribution 272.82 15.07 4.11 4.11 Total: -1.00 -27.12 272.82 -5.90 -33.02 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.66 Total: 2.47 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -0.31 Total: -22.63 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.75 Total: -24.71 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.11 Total: -10.96 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -4.90 Total: 18.70 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.12 -5.90 -33.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725353320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.275 kcal (2) G-P(sol) polarization free energy of solvation -27.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds