Wall clock time and date at job start Mon Mar 30 2020 02:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47245 * 2 1 4 4 C 1.52999 * 109.46980 * 239.99895 * 2 1 3 5 5 C 1.53004 * 109.47246 * 120.00099 * 2 1 3 6 6 H 1.08994 * 109.35389 * 169.57120 * 5 2 1 7 7 C 1.52956 * 109.41137 * 289.39575 * 5 2 1 8 8 C 1.53228 * 109.40111 * 183.70492 * 7 5 2 9 9 C 1.51264 * 108.53820 * 305.36932 * 8 7 5 10 10 O 1.20760 * 120.84952 * 231.32763 * 9 8 7 11 11 C 1.51267 * 118.29985 * 51.34886 * 9 8 7 12 12 C 1.52959 * 109.40993 * 49.74604 * 5 2 1 13 13 H 1.09001 * 109.48222 * 296.28428 * 12 5 2 14 14 C 1.50695 * 109.48505 * 56.32038 * 12 5 2 15 15 H 1.07996 * 120.00520 * 35.95035 * 14 12 5 16 16 C 1.37887 * 120.00062 * 215.94870 * 14 12 5 17 17 N 1.31513 * 119.99359 * 359.97438 * 16 14 12 18 18 Si 1.86791 * 120.00033 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47248 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.47357 * 300.00106 * 18 16 14 21 21 H 1.48505 * 109.47003 * 60.00387 * 18 16 14 22 22 H 1.09004 * 109.46930 * 299.99813 * 1 2 3 23 23 H 1.09000 * 109.47244 * 60.00279 * 1 2 3 24 24 H 1.09003 * 109.46957 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47297 * 180.02562 * 3 2 1 26 26 H 1.09008 * 109.46927 * 300.00278 * 3 2 1 27 27 H 1.08997 * 109.47404 * 59.99694 * 3 2 1 28 28 H 1.09007 * 109.47140 * 330.42033 * 4 2 1 29 29 H 1.09002 * 109.47297 * 90.41398 * 4 2 1 30 30 H 1.09001 * 109.47621 * 210.41979 * 4 2 1 31 31 H 1.09004 * 109.48118 * 303.67952 * 7 5 2 32 32 H 1.08999 * 109.48331 * 63.70880 * 7 5 2 33 33 H 1.08998 * 109.63068 * 65.08617 * 8 7 5 34 34 H 1.09006 * 109.62728 * 185.46043 * 8 7 5 35 35 H 1.09002 * 109.62542 * 188.94072 * 11 9 8 36 36 H 1.09000 * 109.62561 * 68.36888 * 11 9 8 37 37 H 0.97002 * 119.99568 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0401 -0.7213 1.2492 6 1 3.1140 -0.8842 1.1591 7 6 1.7579 0.1376 2.4830 8 6 2.3505 -0.5413 3.7222 9 6 1.8058 -1.9499 3.8057 10 8 1.3032 -2.3602 4.8242 11 6 1.9072 -2.8318 2.5808 12 6 1.3306 -2.0698 1.3829 13 1 0.2639 -1.9058 1.5354 14 6 1.5409 -2.8751 0.1266 15 1 2.4814 -2.8169 -0.4011 16 6 0.5326 -3.6863 -0.3492 17 7 -0.6125 -3.7575 0.2937 18 14 0.7930 -4.6839 -1.9068 19 1 -0.4332 -5.4672 -2.2037 20 1 1.0807 -3.7675 -3.0393 21 1 1.9383 -5.6098 -1.7159 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1301 1.4424 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.3184 -1.4809 -1.5502 29 1 2.1681 -0.0014 -2.0576 30 1 2.9966 -1.1955 -1.0300 31 1 2.2128 1.1198 2.3540 32 1 0.6810 0.2496 2.6095 33 1 3.4368 -0.5732 3.6380 34 1 2.0689 0.0167 4.6153 35 1 1.3379 -3.7474 2.7407 36 1 2.9525 -3.0757 2.3909 37 1 -1.3220 -4.3279 -0.0412 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725353323.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:03 Heat of formation + Delta-G solvation = -79.966566 kcal Electronic energy + Delta-G solvation = -16861.065451 eV Core-core repulsion = 14408.766023 eV Total energy + Delta-G solvation = -2452.299428 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.05602 -39.24445 -35.17855 -34.59279 -31.86089 -28.75069 -28.29483 -27.90705 -26.43814 -23.36717 -22.31246 -20.02017 -19.01017 -18.38246 -16.68706 -16.23806 -16.13330 -15.75991 -15.43028 -14.82813 -14.59191 -14.35570 -14.20553 -13.85663 -13.10529 -12.99013 -12.81732 -12.61481 -12.57048 -12.45384 -12.20174 -12.00272 -11.91845 -11.72110 -11.52210 -11.27108 -10.91932 -10.71958 -10.47395 -10.21728 -9.99824 -8.00919 -5.99950 1.11740 1.44377 1.46786 1.50746 2.49607 3.29000 3.44755 4.02923 4.08930 4.18909 4.38055 4.46027 4.50353 4.71159 4.77749 4.90007 4.95084 4.95883 5.04303 5.09193 5.15432 5.19787 5.22225 5.31027 5.40348 5.42542 5.55986 5.57882 5.63655 5.82715 5.86904 5.96569 6.09920 6.16153 6.47069 6.68386 7.09100 7.58964 9.07959 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.022667 B = 0.013348 C = 0.009531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.988936 B = 2097.182350 C = 2937.140146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C -0.138 4.138 4 C -0.123 4.123 5 C -0.069 4.069 6 H 0.069 0.931 7 C -0.108 4.108 8 C -0.156 4.156 9 C 0.359 3.641 10 O -0.524 6.524 11 C -0.155 4.155 12 C 0.048 3.952 13 H 0.031 0.969 14 C -0.485 4.485 15 H 0.068 0.932 16 C 0.019 3.981 17 N -0.928 5.928 18 Si 0.926 3.074 19 H -0.299 1.299 20 H -0.265 1.265 21 H -0.275 1.275 22 H 0.043 0.957 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.047 0.953 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.036 0.964 36 H 0.095 0.905 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.165 9.994 -0.451 12.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.043 4.043 3 C -0.195 4.195 4 C -0.180 4.180 5 C -0.087 4.087 6 H 0.087 0.913 7 C -0.145 4.145 8 C -0.193 4.193 9 C 0.240 3.760 10 O -0.403 6.403 11 C -0.194 4.194 12 C 0.029 3.971 13 H 0.050 0.950 14 C -0.523 4.523 15 H 0.086 0.914 16 C -0.179 4.179 17 N -0.568 5.568 18 Si 0.754 3.246 19 H -0.226 1.226 20 H -0.190 1.190 21 H -0.200 1.200 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.066 0.934 33 H 0.140 0.860 34 H 0.108 0.892 35 H 0.054 0.946 36 H 0.113 0.887 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.735 9.700 0.043 11.809 hybrid contribution -0.526 -1.346 -0.830 1.667 sum 6.209 8.353 -0.787 10.438 Atomic orbital electron populations 1.21946 0.96560 1.01720 0.99515 1.20215 0.94316 0.94852 0.94900 1.21994 1.01166 0.94667 1.01652 1.22054 1.00861 0.98951 0.96102 1.21311 0.99544 0.94563 0.93303 0.91292 1.21751 1.00364 0.99883 0.92544 1.22280 1.03640 0.92481 1.00942 1.25818 0.71499 0.91784 0.86882 1.90292 1.37537 1.77729 1.34719 1.22510 1.02562 0.98618 0.95691 1.18885 0.96056 0.91438 0.90742 0.95048 1.21389 0.99456 1.23187 1.08253 0.91387 1.25483 0.95372 0.97991 0.99061 1.70045 1.05262 1.40479 1.41053 0.86103 0.76817 0.79549 0.82168 1.22588 1.19012 1.20039 0.93791 0.94024 0.93074 0.91892 0.93066 0.91718 0.93395 0.94442 0.93231 0.87944 0.93446 0.85992 0.89169 0.94551 0.88720 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 7.46 71.98 0.54 -4.67 16 2 C -0.04 -1.40 0.55 -52.18 -0.03 -1.43 16 3 C -0.14 -3.40 7.63 71.98 0.55 -2.85 16 4 C -0.12 -4.33 7.29 71.98 0.53 -3.81 16 5 C -0.07 -2.33 1.19 -10.82 -0.01 -2.34 16 6 H 0.07 2.19 7.85 -2.39 -0.02 2.17 16 7 C -0.11 -3.08 4.45 30.66 0.14 -2.95 16 8 C -0.16 -4.40 6.17 30.10 0.19 -4.22 16 9 C 0.36 14.11 6.72 29.46 0.20 14.31 16 10 O -0.52 -24.19 17.89 -1.45 -0.03 -24.22 16 11 C -0.16 -6.70 5.44 30.11 0.16 -6.54 16 12 C 0.05 2.10 1.24 -11.48 -0.01 2.08 16 13 H 0.03 1.63 5.68 -2.39 -0.01 1.61 16 14 C -0.48 -23.25 4.53 25.60 0.12 -23.13 16 15 H 0.07 3.14 5.88 -2.91 -0.02 3.13 16 16 C 0.02 0.96 4.99 84.66 0.42 1.38 16 17 N -0.93 -52.65 12.78 21.45 0.27 -52.38 16 18 Si 0.93 41.89 29.40 68.60 2.02 43.91 16 19 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H 0.04 1.52 6.85 -2.39 -0.02 1.50 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.05 2.36 5.74 -2.39 -0.01 2.35 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 26 H 0.05 1.20 8.11 -2.38 -0.02 1.18 16 27 H 0.06 1.42 6.23 -2.39 -0.01 1.41 16 28 H 0.05 2.01 5.73 -2.38 -0.01 2.00 16 29 H 0.04 1.14 7.81 -2.39 -0.02 1.12 16 30 H 0.05 1.72 6.34 -2.39 -0.02 1.70 16 31 H 0.10 2.24 6.07 -2.39 -0.01 2.23 16 32 H 0.05 1.51 6.93 -2.39 -0.02 1.49 16 33 H 0.12 2.71 8.14 -2.39 -0.02 2.70 16 34 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 37 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -59.92 275.43 6.08 -53.83 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 1.04 Total: 13.01 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 2.78 Total: -34.16 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.27 Total: -52.38 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.03 Total: -24.22 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.02 Total: 43.91 kcal Total: -59.92 6.08 -53.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725353323.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.134 kcal (2) G-P(sol) polarization free energy of solvation -59.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds