Wall clock time and date at job start Mon Mar 30 2020 03:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00065 * 2 1 4 4 H 1.48500 * 109.47158 * 239.99785 * 3 2 1 5 5 H 1.48500 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47080 * 119.99440 * 3 2 1 7 7 C 1.37882 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99627 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99962 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.46959 * 179.97438 * 9 7 2 11 11 C 1.47849 * 110.99886 * 69.15828 * 10 9 7 12 12 C 1.54907 * 104.79527 * 146.36292 * 11 10 9 13 13 C 1.55143 * 101.65344 * 322.93208 * 12 11 10 14 14 H 1.08997 * 110.85263 * 277.19999 * 13 12 11 15 15 C 1.53000 * 110.70740 * 154.03664 * 13 12 11 16 16 H 1.08998 * 110.36939 * 190.50386 * 15 13 12 17 17 C 1.54372 * 110.51266 * 68.08194 * 15 13 12 18 18 C 1.54266 * 105.06543 * 217.32085 * 17 15 13 19 19 C 1.54374 * 105.05582 * 0.02562 * 18 17 15 20 20 N 1.48566 * 110.40799 * 312.85305 * 15 13 12 21 21 C 1.47439 * 111.00075 * 190.00219 * 10 9 7 22 22 H 0.96996 * 120.00151 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47327 * 60.00567 * 9 7 2 24 24 H 1.08998 * 109.47678 * 299.99737 * 9 7 2 25 25 H 1.09001 * 110.37072 * 265.19129 * 11 10 9 26 26 H 1.08997 * 110.37059 * 27.53750 * 11 10 9 27 27 H 1.08998 * 110.99076 * 204.83610 * 12 11 10 28 28 H 1.08998 * 110.98782 * 81.02007 * 12 11 10 29 29 H 1.09004 * 110.32577 * 336.22027 * 17 15 13 30 30 H 1.08999 * 110.32610 * 98.42280 * 17 15 13 31 31 H 1.08996 * 110.32625 * 118.89426 * 18 17 15 32 32 H 1.09001 * 110.32308 * 241.10639 * 18 17 15 33 33 H 1.09004 * 110.41229 * 265.07600 * 19 18 17 34 34 H 1.08997 * 110.41100 * 142.63209 * 19 18 17 35 35 H 1.00901 * 110.99803 * 277.93297 * 20 15 13 36 36 H 1.08994 * 109.89324 * 117.33887 * 21 10 9 37 37 H 1.09004 * 110.02488 * 356.22566 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9232 -3.6993 1.2905 12 6 3.1616 -5.2136 1.5132 13 6 1.8502 -5.8232 0.9514 14 1 1.0564 -5.7907 1.6976 15 6 2.0819 -7.2580 0.4732 16 1 1.2171 -7.6161 -0.0853 17 6 2.3717 -8.1874 1.6713 18 6 3.4385 -9.1781 1.1614 19 6 3.7041 -8.7635 -0.3017 20 7 3.3069 -7.3335 -0.3640 21 6 1.5187 -4.8982 -0.2385 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5572 -0.8897 24 1 0.6240 -2.5568 0.8903 25 1 3.8743 -3.1702 1.2306 26 1 2.3099 -3.2897 2.0931 27 1 3.2742 -5.4394 2.5736 28 1 4.0267 -5.5600 0.9478 29 1 2.7602 -7.6119 2.5116 30 1 1.4676 -8.7217 1.9632 31 1 4.3507 -9.0889 1.7512 32 1 3.0581 -10.1987 1.2029 33 1 3.0932 -9.3569 -0.9820 34 1 4.7612 -8.8756 -0.5427 35 1 3.1138 -7.0527 -1.3136 36 1 1.8780 -5.3441 -1.1660 37 1 0.4418 -4.7398 -0.2963 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885645196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:28 Heat of formation + Delta-G solvation = 0.806105 kcal Electronic energy + Delta-G solvation = -15814.442526 eV Core-core repulsion = 13397.938415 eV Total energy + Delta-G solvation = -2416.504111 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.32049 -37.09905 -33.06736 -31.34734 -30.30682 -28.96081 -27.38441 -25.61359 -22.46316 -21.89373 -20.77226 -19.77581 -19.08941 -16.58520 -16.35570 -15.61852 -15.11310 -14.38445 -13.90295 -13.70553 -13.09189 -12.95306 -12.49842 -12.25164 -12.13272 -12.06506 -11.49456 -11.34099 -11.17734 -10.97878 -10.79127 -10.62851 -10.37056 -10.19072 -10.18900 -9.97882 -9.69046 -9.08801 -8.46652 -8.36627 -7.08635 -5.96244 -3.97035 3.38249 3.41411 3.45223 4.23391 4.48717 4.59478 4.74083 4.98794 5.05754 5.14435 5.32808 5.37747 5.38346 5.51726 5.63586 5.72096 5.77852 5.84846 5.92151 6.01665 6.13442 6.18783 6.25870 6.37134 6.51645 6.63087 6.77958 6.89070 7.02546 7.31097 7.36827 7.42373 7.89816 8.15845 8.32649 8.64781 9.11441 9.67124 11.14802 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.065698 B = 0.005433 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.089400 B = 5152.909348 C = 5226.866668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.188 3.812 10 N -0.526 5.526 11 C 0.058 3.942 12 C -0.117 4.117 13 C -0.098 4.098 14 H 0.069 0.931 15 C 0.079 3.921 16 H 0.045 0.955 17 C -0.121 4.121 18 C -0.123 4.123 19 C 0.035 3.965 20 N -0.653 5.653 21 C 0.052 3.948 22 H 0.261 0.739 23 H 0.026 0.974 24 H -0.010 1.010 25 H 0.068 0.932 26 H 0.037 0.963 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.339 0.661 36 H 0.060 0.940 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.602 -16.983 2.183 17.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.063 3.937 10 N -0.250 5.250 11 C -0.071 4.071 12 C -0.155 4.155 13 C -0.118 4.118 14 H 0.088 0.912 15 C -0.031 4.031 16 H 0.063 0.937 17 C -0.159 4.159 18 C -0.162 4.162 19 C -0.095 4.095 20 N -0.283 5.283 21 C -0.077 4.077 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.008 0.992 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.156 0.844 36 H 0.078 0.922 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.279 -16.463 2.255 17.435 hybrid contribution -1.048 0.389 0.027 1.118 sum 4.231 -16.074 2.282 16.778 Atomic orbital electron populations 1.69952 1.06073 1.26758 1.51391 1.24996 0.94853 0.99288 0.95572 0.86560 0.79422 0.82765 0.78650 1.20176 1.21423 1.20298 1.21146 0.93521 0.90001 1.49567 0.91997 1.19913 0.90095 0.87968 0.95763 1.63606 1.28259 1.02238 1.30898 1.22826 0.98870 0.94325 0.91031 1.22731 0.98068 0.95360 0.99305 1.22361 0.98340 0.92993 0.98106 0.91217 1.22345 0.91438 0.95393 0.93962 0.93683 1.22346 0.98412 0.96793 0.98387 1.22272 0.99435 0.98428 0.96022 1.22875 1.00804 0.89523 0.96261 1.63601 1.31195 1.18016 1.15472 1.22745 0.97011 0.91054 0.96859 0.92976 0.95553 0.99230 0.91376 0.94494 0.92821 0.89048 0.90715 0.91834 0.91226 0.91886 0.94713 0.90426 0.84443 0.92214 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.50 -14.70 8.80 -34.44 -0.30 -15.00 16 8 H 0.06 1.80 7.76 -52.48 -0.41 1.39 16 9 C 0.19 5.12 4.33 -4.98 -0.02 5.10 16 10 N -0.53 -11.96 5.15 -232.69 -1.20 -13.16 16 11 C 0.06 1.18 6.14 -2.30 -0.01 1.16 16 12 C -0.12 -1.89 5.77 -24.59 -0.14 -2.04 16 13 C -0.10 -1.52 2.81 -88.79 -0.25 -1.77 16 14 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 15 C 0.08 0.99 2.85 -66.07 -0.19 0.80 16 16 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 17 C -0.12 -1.31 6.43 -25.35 -0.16 -1.47 16 18 C -0.12 -1.17 7.00 -25.35 -0.18 -1.35 16 19 C 0.03 0.35 7.47 -2.20 -0.02 0.33 16 20 N -0.65 -8.06 5.71 -102.77 -0.59 -8.64 16 21 C 0.05 0.97 6.39 -2.84 -0.02 0.96 16 22 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.03 0.76 8.03 -51.93 -0.42 0.35 16 24 H -0.01 -0.29 7.85 -51.93 -0.41 -0.70 16 25 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.04 0.81 7.62 -51.93 -0.40 0.41 16 27 H 0.05 0.79 7.78 -51.93 -0.40 0.38 16 28 H 0.09 1.51 6.89 -51.93 -0.36 1.16 16 29 H 0.07 0.85 7.00 -51.93 -0.36 0.49 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.34 4.13 8.02 -39.29 -0.32 3.81 16 36 H 0.06 1.05 6.83 -51.93 -0.35 0.69 16 37 H 0.04 0.81 7.56 -51.93 -0.39 0.42 16 LS Contribution 287.24 15.07 4.33 4.33 Total: -1.00 -30.59 287.24 -9.46 -40.05 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.33 Total: -1.22 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -1.39 Total: -11.80 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -1.05 Total: -48.55 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.59 -9.46 -40.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885645196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.859 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds