Wall clock time and date at job start Mon Mar 30 2020 03:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00224 * 2 1 4 4 H 1.48496 * 109.47243 * 270.00160 * 3 2 1 5 5 H 1.48504 * 109.46946 * 29.99823 * 3 2 1 6 6 H 1.48495 * 109.46958 * 149.99843 * 3 2 1 7 7 C 1.37875 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00336 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99849 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47018 * 179.97438 * 9 7 2 11 11 C 1.47848 * 110.99878 * 49.15605 * 10 9 7 12 12 C 1.55110 * 104.90413 * 146.24152 * 11 10 9 13 13 C 1.55140 * 101.56017 * 323.15646 * 12 11 10 14 14 H 1.08998 * 110.70863 * 276.97225 * 13 12 11 15 15 C 1.53006 * 110.70870 * 153.90338 * 13 12 11 16 16 H 1.08995 * 110.42087 * 304.67461 * 15 13 12 17 17 C 1.54915 * 110.36917 * 66.98108 * 15 13 12 18 18 C 1.55138 * 101.64918 * 155.89773 * 17 15 13 19 19 C 1.54320 * 103.02210 * 324.34672 * 18 17 15 20 20 N 1.47437 * 107.23257 * 22.28526 * 19 18 17 21 21 C 1.47436 * 110.99910 * 169.99796 * 10 9 7 22 22 H 0.97000 * 120.00054 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46695 * 59.99788 * 9 7 2 24 24 H 1.09001 * 109.46769 * 299.99747 * 9 7 2 25 25 H 1.09004 * 110.37419 * 265.19232 * 11 10 9 26 26 H 1.08994 * 110.37413 * 27.42594 * 11 10 9 27 27 H 1.08998 * 111.14986 * 205.05177 * 12 11 10 28 28 H 1.09002 * 110.92545 * 81.16745 * 12 11 10 29 29 H 1.08995 * 110.99221 * 273.99239 * 17 15 13 30 30 H 1.09001 * 110.98790 * 37.81142 * 17 15 13 31 31 H 1.09000 * 110.70480 * 205.96311 * 18 17 15 32 32 H 1.08999 * 110.85101 * 82.80130 * 18 17 15 33 33 H 1.08998 * 109.88703 * 262.87492 * 19 18 17 34 34 H 1.08998 * 110.02181 * 141.76373 * 19 18 17 35 35 H 1.00906 * 110.99932 * 238.72043 * 20 19 18 36 36 H 1.09007 * 109.89012 * 117.34083 * 21 10 9 37 37 H 1.08997 * 110.02686 * 356.22656 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2055 -3.6157 -0.0027 11 6 3.2359 -3.4328 1.0416 12 6 3.5690 -4.8671 1.5290 13 6 2.1753 -5.5463 1.4723 14 1 1.6022 -5.3258 2.3728 15 6 2.3174 -7.0576 1.2801 16 1 2.9142 -7.2739 0.3941 17 6 2.9597 -7.7026 2.5336 18 6 2.4497 -9.1641 2.4300 19 6 1.0285 -8.9964 1.8526 20 7 0.9855 -7.6900 1.1705 21 6 1.5185 -4.8984 0.2352 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5562 -0.8920 24 1 0.6240 -2.5575 0.8880 25 1 4.1226 -2.9585 0.6209 26 1 2.8411 -2.8360 1.8638 27 1 3.9567 -4.8563 2.5477 28 1 4.2693 -5.3557 0.8515 29 1 4.0475 -7.6637 2.4787 30 1 2.5990 -7.2269 3.4456 31 1 2.4132 -9.6302 3.4147 32 1 3.0748 -9.7460 1.7527 33 1 0.2957 -9.0180 2.6591 34 1 0.8188 -9.7939 1.1398 35 1 0.2706 -7.0984 1.5671 36 1 1.6374 -5.5491 -0.6312 37 1 0.4594 -4.7249 0.4259 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885645197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:30 Heat of formation + Delta-G solvation = -4.955601 kcal Electronic energy + Delta-G solvation = -15746.505797 eV Core-core repulsion = 13329.751839 eV Total energy + Delta-G solvation = -2416.753957 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.35144 -37.29392 -33.17472 -31.44095 -30.24008 -28.88333 -27.46925 -25.59326 -22.61738 -21.46275 -21.01392 -20.08892 -19.48670 -16.46131 -16.14001 -15.67989 -15.12866 -14.29374 -14.00615 -13.72401 -13.40115 -13.08327 -12.65975 -12.51691 -12.20169 -11.65027 -11.40894 -11.38981 -11.28085 -10.98822 -10.85447 -10.69724 -10.61352 -10.33312 -10.26270 -10.14962 -9.72244 -9.04319 -8.45566 -8.42757 -7.12456 -6.01831 -4.03154 3.32744 3.38494 3.41792 4.15491 4.44242 4.62006 4.67429 4.88872 5.06009 5.11712 5.19709 5.31974 5.35641 5.42717 5.54765 5.72425 5.73101 5.81327 5.87429 5.93806 6.02016 6.09665 6.20302 6.30667 6.47776 6.66869 6.73811 6.84059 6.92308 7.30028 7.39692 7.46774 7.81357 8.07020 8.28384 8.59024 9.05015 9.61329 11.09555 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.062767 B = 0.005484 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.983672 B = 5104.618806 C = 5384.517120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.188 3.812 10 N -0.532 5.532 11 C 0.061 3.939 12 C -0.123 4.123 13 C -0.113 4.113 14 H 0.068 0.932 15 C 0.093 3.907 16 H 0.088 0.912 17 C -0.149 4.149 18 C -0.142 4.142 19 C 0.047 3.953 20 N -0.681 5.681 21 C 0.054 3.946 22 H 0.261 0.739 23 H 0.031 0.969 24 H -0.010 1.010 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.340 0.660 36 H 0.069 0.931 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.541 -15.284 5.957 17.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.062 3.938 10 N -0.257 5.257 11 C -0.067 4.067 12 C -0.162 4.162 13 C -0.133 4.133 14 H 0.086 0.914 15 C -0.017 4.017 16 H 0.106 0.894 17 C -0.188 4.188 18 C -0.180 4.180 19 C -0.083 4.083 20 N -0.310 5.310 21 C -0.074 4.074 22 H 0.071 0.929 23 H 0.049 0.951 24 H 0.008 0.992 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.156 0.844 36 H 0.087 0.913 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.674 -15.414 4.788 16.804 hybrid contribution -0.096 1.260 1.770 2.175 sum 4.577 -14.154 6.558 16.257 Atomic orbital electron populations 1.69963 1.06074 1.26734 1.50933 1.24994 0.94849 0.99314 0.95372 0.86515 0.79691 0.83153 0.78167 1.20572 1.21317 1.19881 1.21253 0.93478 0.90238 1.50257 0.91877 1.19909 0.90458 0.87472 0.95955 1.63694 1.14556 1.02320 1.45125 1.22808 0.96267 0.93885 0.93730 1.22801 0.95782 0.97208 1.00414 1.22659 0.97814 0.93441 0.99387 0.91381 1.22544 0.89863 0.92363 0.96940 0.89440 1.23192 1.01282 0.95217 0.99091 1.22774 0.97063 0.97249 1.00938 1.22615 0.96133 0.93015 0.96533 1.61838 1.06106 1.04560 1.58488 1.22771 0.96759 0.92278 0.95614 0.92938 0.95115 0.99197 0.91301 0.93470 0.91899 0.91258 0.90773 0.91503 0.91429 0.91148 0.93343 0.91010 0.84357 0.91273 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.67 8.35 -34.44 -0.29 -14.95 16 8 H 0.06 1.77 6.67 -52.49 -0.35 1.42 16 9 C 0.19 5.05 4.59 -4.97 -0.02 5.02 16 10 N -0.53 -11.94 5.31 -232.55 -1.23 -13.18 16 11 C 0.06 1.22 5.40 -2.19 -0.01 1.21 16 12 C -0.12 -1.88 6.17 -24.48 -0.15 -2.03 16 13 C -0.11 -1.70 2.26 -88.79 -0.20 -1.90 16 14 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 15 C 0.09 1.18 2.72 -66.18 -0.18 1.00 16 16 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 17 C -0.15 -1.58 6.12 -24.59 -0.15 -1.73 16 18 C -0.14 -1.33 6.94 -24.91 -0.17 -1.50 16 19 C 0.05 0.48 7.58 -2.84 -0.02 0.46 16 20 N -0.68 -8.52 7.09 -103.84 -0.74 -9.26 16 21 C 0.05 1.01 6.24 -2.84 -0.02 1.00 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 24 H -0.01 -0.28 7.96 -51.93 -0.41 -0.69 16 25 H 0.07 1.39 7.69 -51.93 -0.40 0.99 16 26 H 0.05 1.02 7.55 -51.93 -0.39 0.63 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.00 8.05 -51.93 -0.42 0.58 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.72 8.06 -51.93 -0.42 0.30 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.34 4.25 8.36 -39.29 -0.33 3.92 16 36 H 0.07 1.27 7.82 -51.92 -0.41 0.87 16 37 H 0.05 0.89 7.50 -51.93 -0.39 0.50 16 LS Contribution 289.60 15.07 4.36 4.36 Total: -1.00 -29.95 289.60 -9.66 -39.61 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.45 Total: -0.10 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -1.31 Total: -11.91 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -1.23 Total: -48.76 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.95 -9.66 -39.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885645197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.650 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds