Wall clock time and date at job start Mon Mar 30 2020 03:33:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86802 * 120.00224 * 2 1
4 4 H 1.48496 * 109.47243 * 270.00160 * 3 2 1
5 5 H 1.48504 * 109.46946 * 29.99823 * 3 2 1
6 6 H 1.48495 * 109.46958 * 149.99843 * 3 2 1
7 7 C 1.37875 * 119.99933 * 180.02562 * 2 1 3
8 8 H 1.07993 * 120.00336 * 179.97438 * 7 2 1
9 9 C 1.50707 * 119.99849 * 0.02562 * 7 2 1
10 10 N 1.46899 * 109.47018 * 179.97438 * 9 7 2
11 11 C 1.47848 * 110.99878 * 49.15605 * 10 9 7
12 12 C 1.55110 * 104.90413 * 146.24152 * 11 10 9
13 13 C 1.55140 * 101.56017 * 323.15646 * 12 11 10
14 14 H 1.08998 * 110.70863 * 276.97225 * 13 12 11
15 15 C 1.53006 * 110.70870 * 153.90338 * 13 12 11
16 16 H 1.08995 * 110.42087 * 304.67461 * 15 13 12
17 17 C 1.54915 * 110.36917 * 66.98108 * 15 13 12
18 18 C 1.55138 * 101.64918 * 155.89773 * 17 15 13
19 19 C 1.54320 * 103.02210 * 324.34672 * 18 17 15
20 20 N 1.47437 * 107.23257 * 22.28526 * 19 18 17
21 21 C 1.47436 * 110.99910 * 169.99796 * 10 9 7
22 22 H 0.97000 * 120.00054 * 0.02562 * 1 2 3
23 23 H 1.08999 * 109.46695 * 59.99788 * 9 7 2
24 24 H 1.09001 * 109.46769 * 299.99747 * 9 7 2
25 25 H 1.09004 * 110.37419 * 265.19232 * 11 10 9
26 26 H 1.08994 * 110.37413 * 27.42594 * 11 10 9
27 27 H 1.08998 * 111.14986 * 205.05177 * 12 11 10
28 28 H 1.09002 * 110.92545 * 81.16745 * 12 11 10
29 29 H 1.08995 * 110.99221 * 273.99239 * 17 15 13
30 30 H 1.09001 * 110.98790 * 37.81142 * 17 15 13
31 31 H 1.09000 * 110.70480 * 205.96311 * 18 17 15
32 32 H 1.08999 * 110.85101 * 82.80130 * 18 17 15
33 33 H 1.08998 * 109.88703 * 262.87492 * 19 18 17
34 34 H 1.08998 * 110.02181 * 141.76373 * 19 18 17
35 35 H 1.00906 * 110.99932 * 238.72043 * 20 19 18
36 36 H 1.09007 * 109.89012 * 117.34083 * 21 10 9
37 37 H 1.08997 * 110.02686 * 356.22656 * 21 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4401 0.7001
7 6 2.0045 -1.1940 -0.0005
8 1 3.0844 -1.1941 -0.0010
9 6 1.2509 -2.4992 -0.0017
10 7 2.2055 -3.6157 -0.0027
11 6 3.2359 -3.4328 1.0416
12 6 3.5690 -4.8671 1.5290
13 6 2.1753 -5.5463 1.4723
14 1 1.6022 -5.3258 2.3728
15 6 2.3174 -7.0576 1.2801
16 1 2.9142 -7.2739 0.3941
17 6 2.9597 -7.7026 2.5336
18 6 2.4497 -9.1641 2.4300
19 6 1.0285 -8.9964 1.8526
20 7 0.9855 -7.6900 1.1705
21 6 1.5185 -4.8984 0.2352
22 1 -0.4850 0.8400 -0.0004
23 1 0.6246 -2.5562 -0.8920
24 1 0.6240 -2.5575 0.8880
25 1 4.1226 -2.9585 0.6209
26 1 2.8411 -2.8360 1.8638
27 1 3.9567 -4.8563 2.5477
28 1 4.2693 -5.3557 0.8515
29 1 4.0475 -7.6637 2.4787
30 1 2.5990 -7.2269 3.4456
31 1 2.4132 -9.6302 3.4147
32 1 3.0748 -9.7460 1.7527
33 1 0.2957 -9.0180 2.6591
34 1 0.8188 -9.7939 1.1398
35 1 0.2706 -7.0984 1.5671
36 1 1.6374 -5.5491 -0.6312
37 1 0.4594 -4.7249 0.4259
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000885645197.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:33:29
Heat of formation + Delta-G solvation = -26.648980 kcal
Electronic energy + Delta-G solvation = -15747.446492 eV
Core-core repulsion = 13329.751839 eV
Total energy + Delta-G solvation = -2417.694653 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.56497 -38.62033 -35.17764 -33.10345 -31.17965 -30.20584 -29.14854 -27.18502
-24.54115 -22.60053 -22.08858 -21.31483 -20.94970 -18.46504 -17.29990 -17.09939
-16.54086 -15.94810 -15.50097 -14.98075 -14.63810 -14.46367 -14.35961 -13.94618
-13.56357 -13.15058 -13.00329 -12.77302 -12.63417 -12.39821 -12.25827 -12.16599
-11.93571 -11.81986 -11.61774 -11.49915 -11.39189 -11.09625 -10.66592 -9.36324
-8.97905 -8.23816 -6.34492 1.39402 1.41765 1.52529 2.38753 3.09435
3.19511 3.42208 3.66476 3.82769 3.86978 3.94694 4.06119 4.26796
4.47020 4.52367 4.55981 4.65818 4.72658 4.77491 4.95455 4.99144
5.02934 5.03437 5.09543 5.12862 5.17058 5.20012 5.35136 5.37279
5.48423 5.63175 5.96734 6.01963 6.31325 6.43469 6.61503 6.83197
7.36021 8.88517
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.062767 B = 0.005484 C = 0.005199
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 445.983672 B = 5104.618806 C = 5384.517120
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C 0.001 3.999
3 Si 0.972 3.028
4 H -0.272 1.272
5 H -0.281 1.281
6 H -0.262 1.262
7 C -0.532 4.532
8 H 0.066 0.934
9 C 0.205 3.795
10 N -0.545 5.545
11 C 0.057 3.943
12 C -0.107 4.107
13 C -0.099 4.099
14 H 0.066 0.934
15 C 0.098 3.902
16 H 0.082 0.918
17 C -0.144 4.144
18 C -0.136 4.136
19 C 0.043 3.957
20 N -0.697 5.697
21 C 0.054 3.946
22 H 0.265 0.735
23 H -0.003 1.003
24 H -0.038 1.038
25 H 0.065 0.935
26 H 0.024 0.976
27 H 0.090 0.910
28 H 0.085 0.915
29 H 0.086 0.914
30 H 0.067 0.933
31 H 0.084 0.916
32 H 0.075 0.925
33 H 0.058 0.942
34 H 0.073 0.927
35 H 0.337 0.663
36 H 0.072 0.928
37 H 0.028 0.972
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.349 -16.175 6.942 18.712
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.197 4.197
3 Si 0.796 3.204
4 H -0.198 1.198
5 H -0.206 1.206
6 H -0.186 1.186
7 C -0.570 4.570
8 H 0.084 0.916
9 C 0.078 3.922
10 N -0.269 5.269
11 C -0.071 4.071
12 C -0.145 4.145
13 C -0.119 4.119
14 H 0.084 0.916
15 C -0.012 4.012
16 H 0.100 0.900
17 C -0.183 4.183
18 C -0.174 4.174
19 C -0.086 4.086
20 N -0.326 5.326
21 C -0.074 4.074
22 H 0.074 0.926
23 H 0.015 0.985
24 H -0.021 1.021
25 H 0.083 0.917
26 H 0.042 0.958
27 H 0.109 0.891
28 H 0.103 0.897
29 H 0.105 0.895
30 H 0.086 0.914
31 H 0.103 0.897
32 H 0.094 0.906
33 H 0.076 0.924
34 H 0.092 0.908
35 H 0.153 0.847
36 H 0.091 0.909
37 H 0.046 0.954
Dipole moment (debyes) X Y Z Total
from point charges 6.496 -16.336 5.775 18.504
hybrid contribution -0.715 1.489 1.426 2.182
sum 5.780 -14.847 7.201 17.484
Atomic orbital electron populations
1.70100 1.07881 1.27992 1.51553 1.25976 0.95767 1.03416 0.94555
0.85342 0.78568 0.77949 0.78532 1.19795 1.20619 1.18597 1.21559
0.93743 0.91177 1.50507 0.91578 1.19528 0.90515 0.89230 0.92940
1.63576 1.14280 1.02270 1.46813 1.22835 0.95008 0.96953 0.92316
1.22736 0.96046 0.93550 1.02181 1.22537 0.97187 0.95110 0.97105
0.91572 1.22427 0.90323 0.90397 0.98034 0.90043 1.23157 1.01848
0.95665 0.97618 1.22760 0.96128 0.96566 1.01946 1.22701 0.97298
0.91751 0.96847 1.61846 1.05921 1.05468 1.59384 1.22776 0.95898
0.90897 0.97835 0.92620 0.98530 1.02080 0.91673 0.95755 0.89109
0.89669 0.89549 0.91418 0.89728 0.90631 0.92383 0.90819 0.84678
0.90941 0.95390
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.76 13.29 21.45 0.28 -57.47 16
2 C 0.00 0.06 5.46 84.65 0.46 0.52 16
3 Si 0.97 44.90 29.54 68.60 2.03 46.93 16
4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16
5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16
6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16
7 C -0.53 -31.09 8.35 25.60 0.21 -30.88 16
8 H 0.07 3.74 6.67 -2.91 -0.02 3.72 16
9 C 0.20 11.55 4.59 85.56 0.39 11.94 16
10 N -0.55 -25.10 5.31 -889.65 -4.72 -29.82 16
11 C 0.06 2.26 5.40 86.84 0.47 2.73 16
12 C -0.11 -3.02 6.17 32.05 0.20 -2.82 16
13 C -0.10 -2.88 2.26 -9.61 -0.02 -2.90 16
14 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16
15 C 0.10 2.30 2.72 45.39 0.12 2.42 16
16 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16
17 C -0.14 -2.59 6.12 31.98 0.20 -2.39 16
18 C -0.14 -2.11 6.94 31.78 0.22 -1.89 16
19 C 0.04 0.79 7.58 86.65 0.66 1.45 16
20 N -0.70 -16.56 7.09 -482.45 -3.42 -19.98 16
21 C 0.05 2.06 6.24 86.65 0.54 2.60 16
22 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16
23 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16
24 H -0.04 -2.33 7.96 -2.39 -0.02 -2.35 16
25 H 0.06 2.61 7.69 -2.38 -0.02 2.59 16
26 H 0.02 1.07 7.55 -2.39 -0.02 1.05 16
27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16
28 H 0.08 2.19 8.05 -2.39 -0.02 2.17 16
29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16
30 H 0.07 1.23 8.06 -2.39 -0.02 1.21 16
31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16
32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16
34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16
35 H 0.34 8.24 8.36 -89.69 -0.75 7.49 16
36 H 0.07 2.70 7.82 -2.38 -0.02 2.68 16
37 H 0.03 1.14 7.50 -2.39 -0.02 1.13 16
Total: -1.00 -65.88 289.60 -2.11 -67.98
By element:
Atomic # 1 Polarization: 11.31 SS G_CDS: 0.28 Total: 11.59 kcal
Atomic # 6 Polarization: -22.68 SS G_CDS: 3.45 Total: -19.23 kcal
Atomic # 7 Polarization: -99.41 SS G_CDS: -7.86 Total: -107.27 kcal
Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal
Total: -65.88 -2.11 -67.98 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885645197.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.335 kcal
(2) G-P(sol) polarization free energy of solvation -65.878 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.543 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.106 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.984 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.649 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds