Wall clock time and date at job start Mon Mar 30 2020 03:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00224 * 2 1 4 4 H 1.48496 * 109.47243 * 270.00160 * 3 2 1 5 5 H 1.48504 * 109.46946 * 29.99823 * 3 2 1 6 6 H 1.48495 * 109.46958 * 149.99843 * 3 2 1 7 7 C 1.37875 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00336 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99849 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47018 * 179.97438 * 9 7 2 11 11 C 1.47848 * 110.99878 * 49.15605 * 10 9 7 12 12 C 1.55110 * 104.90413 * 146.24152 * 11 10 9 13 13 C 1.55140 * 101.56017 * 323.15646 * 12 11 10 14 14 H 1.08998 * 110.70863 * 276.97225 * 13 12 11 15 15 C 1.53006 * 110.70870 * 153.90338 * 13 12 11 16 16 H 1.08995 * 110.42087 * 304.67461 * 15 13 12 17 17 C 1.54915 * 110.36917 * 66.98108 * 15 13 12 18 18 C 1.55138 * 101.64918 * 155.89773 * 17 15 13 19 19 C 1.54320 * 103.02210 * 324.34672 * 18 17 15 20 20 N 1.47437 * 107.23257 * 22.28526 * 19 18 17 21 21 C 1.47436 * 110.99910 * 169.99796 * 10 9 7 22 22 H 0.97000 * 120.00054 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46695 * 59.99788 * 9 7 2 24 24 H 1.09001 * 109.46769 * 299.99747 * 9 7 2 25 25 H 1.09004 * 110.37419 * 265.19232 * 11 10 9 26 26 H 1.08994 * 110.37413 * 27.42594 * 11 10 9 27 27 H 1.08998 * 111.14986 * 205.05177 * 12 11 10 28 28 H 1.09002 * 110.92545 * 81.16745 * 12 11 10 29 29 H 1.08995 * 110.99221 * 273.99239 * 17 15 13 30 30 H 1.09001 * 110.98790 * 37.81142 * 17 15 13 31 31 H 1.09000 * 110.70480 * 205.96311 * 18 17 15 32 32 H 1.08999 * 110.85101 * 82.80130 * 18 17 15 33 33 H 1.08998 * 109.88703 * 262.87492 * 19 18 17 34 34 H 1.08998 * 110.02181 * 141.76373 * 19 18 17 35 35 H 1.00906 * 110.99932 * 238.72043 * 20 19 18 36 36 H 1.09007 * 109.89012 * 117.34083 * 21 10 9 37 37 H 1.08997 * 110.02686 * 356.22656 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2055 -3.6157 -0.0027 11 6 3.2359 -3.4328 1.0416 12 6 3.5690 -4.8671 1.5290 13 6 2.1753 -5.5463 1.4723 14 1 1.6022 -5.3258 2.3728 15 6 2.3174 -7.0576 1.2801 16 1 2.9142 -7.2739 0.3941 17 6 2.9597 -7.7026 2.5336 18 6 2.4497 -9.1641 2.4300 19 6 1.0285 -8.9964 1.8526 20 7 0.9855 -7.6900 1.1705 21 6 1.5185 -4.8984 0.2352 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5562 -0.8920 24 1 0.6240 -2.5575 0.8880 25 1 4.1226 -2.9585 0.6209 26 1 2.8411 -2.8360 1.8638 27 1 3.9567 -4.8563 2.5477 28 1 4.2693 -5.3557 0.8515 29 1 4.0475 -7.6637 2.4787 30 1 2.5990 -7.2269 3.4456 31 1 2.4132 -9.6302 3.4147 32 1 3.0748 -9.7460 1.7527 33 1 0.2957 -9.0180 2.6591 34 1 0.8188 -9.7939 1.1398 35 1 0.2706 -7.0984 1.5671 36 1 1.6374 -5.5491 -0.6312 37 1 0.4594 -4.7249 0.4259 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885645197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:29 Heat of formation + Delta-G solvation = -26.648980 kcal Electronic energy + Delta-G solvation = -15747.446492 eV Core-core repulsion = 13329.751839 eV Total energy + Delta-G solvation = -2417.694653 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.56497 -38.62033 -35.17764 -33.10345 -31.17965 -30.20584 -29.14854 -27.18502 -24.54115 -22.60053 -22.08858 -21.31483 -20.94970 -18.46504 -17.29990 -17.09939 -16.54086 -15.94810 -15.50097 -14.98075 -14.63810 -14.46367 -14.35961 -13.94618 -13.56357 -13.15058 -13.00329 -12.77302 -12.63417 -12.39821 -12.25827 -12.16599 -11.93571 -11.81986 -11.61774 -11.49915 -11.39189 -11.09625 -10.66592 -9.36324 -8.97905 -8.23816 -6.34492 1.39402 1.41765 1.52529 2.38753 3.09435 3.19511 3.42208 3.66476 3.82769 3.86978 3.94694 4.06119 4.26796 4.47020 4.52367 4.55981 4.65818 4.72658 4.77491 4.95455 4.99144 5.02934 5.03437 5.09543 5.12862 5.17058 5.20012 5.35136 5.37279 5.48423 5.63175 5.96734 6.01963 6.31325 6.43469 6.61503 6.83197 7.36021 8.88517 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.062767 B = 0.005484 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.983672 B = 5104.618806 C = 5384.517120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.532 4.532 8 H 0.066 0.934 9 C 0.205 3.795 10 N -0.545 5.545 11 C 0.057 3.943 12 C -0.107 4.107 13 C -0.099 4.099 14 H 0.066 0.934 15 C 0.098 3.902 16 H 0.082 0.918 17 C -0.144 4.144 18 C -0.136 4.136 19 C 0.043 3.957 20 N -0.697 5.697 21 C 0.054 3.946 22 H 0.265 0.735 23 H -0.003 1.003 24 H -0.038 1.038 25 H 0.065 0.935 26 H 0.024 0.976 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.337 0.663 36 H 0.072 0.928 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.349 -16.175 6.942 18.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.570 4.570 8 H 0.084 0.916 9 C 0.078 3.922 10 N -0.269 5.269 11 C -0.071 4.071 12 C -0.145 4.145 13 C -0.119 4.119 14 H 0.084 0.916 15 C -0.012 4.012 16 H 0.100 0.900 17 C -0.183 4.183 18 C -0.174 4.174 19 C -0.086 4.086 20 N -0.326 5.326 21 C -0.074 4.074 22 H 0.074 0.926 23 H 0.015 0.985 24 H -0.021 1.021 25 H 0.083 0.917 26 H 0.042 0.958 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.153 0.847 36 H 0.091 0.909 37 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.496 -16.336 5.775 18.504 hybrid contribution -0.715 1.489 1.426 2.182 sum 5.780 -14.847 7.201 17.484 Atomic orbital electron populations 1.70100 1.07881 1.27992 1.51553 1.25976 0.95767 1.03416 0.94555 0.85342 0.78568 0.77949 0.78532 1.19795 1.20619 1.18597 1.21559 0.93743 0.91177 1.50507 0.91578 1.19528 0.90515 0.89230 0.92940 1.63576 1.14280 1.02270 1.46813 1.22835 0.95008 0.96953 0.92316 1.22736 0.96046 0.93550 1.02181 1.22537 0.97187 0.95110 0.97105 0.91572 1.22427 0.90323 0.90397 0.98034 0.90043 1.23157 1.01848 0.95665 0.97618 1.22760 0.96128 0.96566 1.01946 1.22701 0.97298 0.91751 0.96847 1.61846 1.05921 1.05468 1.59384 1.22776 0.95898 0.90897 0.97835 0.92620 0.98530 1.02080 0.91673 0.95755 0.89109 0.89669 0.89549 0.91418 0.89728 0.90631 0.92383 0.90819 0.84678 0.90941 0.95390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.76 13.29 21.45 0.28 -57.47 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.53 -31.09 8.35 25.60 0.21 -30.88 16 8 H 0.07 3.74 6.67 -2.91 -0.02 3.72 16 9 C 0.20 11.55 4.59 85.56 0.39 11.94 16 10 N -0.55 -25.10 5.31 -889.65 -4.72 -29.82 16 11 C 0.06 2.26 5.40 86.84 0.47 2.73 16 12 C -0.11 -3.02 6.17 32.05 0.20 -2.82 16 13 C -0.10 -2.88 2.26 -9.61 -0.02 -2.90 16 14 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 15 C 0.10 2.30 2.72 45.39 0.12 2.42 16 16 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 17 C -0.14 -2.59 6.12 31.98 0.20 -2.39 16 18 C -0.14 -2.11 6.94 31.78 0.22 -1.89 16 19 C 0.04 0.79 7.58 86.65 0.66 1.45 16 20 N -0.70 -16.56 7.09 -482.45 -3.42 -19.98 16 21 C 0.05 2.06 6.24 86.65 0.54 2.60 16 22 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 23 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 24 H -0.04 -2.33 7.96 -2.39 -0.02 -2.35 16 25 H 0.06 2.61 7.69 -2.38 -0.02 2.59 16 26 H 0.02 1.07 7.55 -2.39 -0.02 1.05 16 27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.08 2.19 8.05 -2.39 -0.02 2.17 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.23 8.06 -2.39 -0.02 1.21 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.34 8.24 8.36 -89.69 -0.75 7.49 16 36 H 0.07 2.70 7.82 -2.38 -0.02 2.68 16 37 H 0.03 1.14 7.50 -2.39 -0.02 1.13 16 Total: -1.00 -65.88 289.60 -2.11 -67.98 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.28 Total: 11.59 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 3.45 Total: -19.23 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -7.86 Total: -107.27 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -65.88 -2.11 -67.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885645197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.335 kcal (2) G-P(sol) polarization free energy of solvation -65.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds