Wall clock time and date at job start Mon Mar 30 2020 03:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47006 * 179.97438 * 10 9 7 12 12 C 1.47631 * 111.00053 * 66.04781 * 11 10 9 13 13 C 1.52595 * 111.72950 * 181.83888 * 12 11 10 14 14 C 1.53881 * 111.20116 * 306.32868 * 13 12 11 15 15 C 1.51638 * 106.97125 * 55.02142 * 14 13 12 16 16 H 1.09004 * 109.54665 * 56.41925 * 15 14 13 17 17 N 1.45883 * 117.36862 * 181.25334 * 15 14 13 18 18 C 1.48611 * 107.04460 * 148.61127 * 17 15 14 19 19 C 1.55332 * 106.98432 * 355.01077 * 18 17 15 20 20 C 1.45622 * 110.99704 * 187.06417 * 11 10 9 21 21 H 1.08995 * 110.78409 * 292.11541 * 20 11 10 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 24 24 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 25 25 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 26 26 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 27 27 H 1.09004 * 109.02701 * 302.41480 * 12 11 10 28 28 H 1.08999 * 109.03293 * 61.25305 * 12 11 10 29 29 H 1.09003 * 109.13117 * 66.77393 * 13 12 11 30 30 H 1.09000 * 109.13103 * 185.94495 * 13 12 11 31 31 H 1.09006 * 109.95683 * 174.38564 * 14 13 12 32 32 H 1.08999 * 109.95736 * 295.65805 * 14 13 12 33 33 H 1.00896 * 111.00534 * 269.89372 * 17 15 14 34 34 H 1.09000 * 109.93040 * 235.68634 * 18 17 15 35 35 H 1.08991 * 109.92559 * 114.34310 * 18 17 15 36 36 H 1.08998 * 110.95490 * 219.32784 * 19 18 17 37 37 H 1.09003 * 110.98015 * 95.63229 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 0.7614 -5.1130 -1.2581 13 6 -0.0441 -6.4091 -1.2570 14 6 0.8494 -7.6193 -0.9329 15 6 1.5371 -7.3214 0.3853 16 1 0.7875 -7.1146 1.1492 17 7 2.4698 -8.3202 0.8960 18 6 3.5195 -7.5893 1.6525 19 6 3.2413 -6.0727 1.4648 20 6 2.4185 -6.0607 0.1684 21 1 3.0571 -6.1762 -0.7074 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6242 -2.5567 0.8904 24 1 0.6248 -2.5571 -0.8896 25 1 2.8720 -3.6043 -0.8895 26 1 2.8721 -3.6042 0.8905 27 1 0.0808 -4.2717 -1.3891 28 1 1.4646 -5.1323 -2.0907 29 1 -0.8343 -6.3380 -0.5095 30 1 -0.4938 -6.5511 -2.2397 31 1 0.2393 -8.5178 -0.8394 32 1 1.5931 -7.7536 -1.7183 33 1 1.9971 -8.9878 1.4865 34 1 4.5041 -7.8381 1.2565 35 1 3.4645 -7.8492 2.7096 36 1 4.1715 -5.5181 1.3413 37 1 2.6613 -5.6762 2.2982 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885645413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:50 Heat of formation + Delta-G solvation = -8.271032 kcal Electronic energy + Delta-G solvation = -16034.301247 eV Core-core repulsion = 13617.403522 eV Total energy + Delta-G solvation = -2416.897725 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.97635 -36.20368 -34.06991 -32.84491 -29.91097 -28.68334 -28.22315 -24.66445 -23.02693 -22.03161 -20.97090 -19.87064 -19.60369 -16.92760 -16.27796 -15.33508 -14.87322 -14.50687 -14.26150 -13.72668 -13.61026 -13.36001 -12.97283 -12.76409 -12.15852 -11.84686 -11.75519 -11.36591 -11.22562 -10.95180 -10.81510 -10.74843 -10.59210 -10.17755 -10.08126 -9.85332 -9.57562 -8.55807 -8.48197 -8.29885 -7.88350 -6.34819 -4.03431 3.44382 3.46487 3.65237 3.94559 4.41538 4.58958 4.69852 4.79015 5.10734 5.17709 5.24176 5.38366 5.43098 5.47823 5.49696 5.68404 5.77021 5.83359 5.97578 6.04351 6.08662 6.10629 6.20132 6.24604 6.33841 6.41235 6.49770 6.77697 6.83286 7.26281 7.34568 7.41070 7.66453 7.73689 8.25320 8.47836 8.90252 9.68850 11.06280 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.041881 B = 0.006379 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.394083 B = 4388.483996 C = 4881.988602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.603 4.603 8 H 0.047 0.953 9 C 0.016 3.984 10 C 0.067 3.933 11 N -0.519 5.519 12 C 0.049 3.951 13 C -0.115 4.115 14 C -0.100 4.100 15 C 0.075 3.925 16 H 0.053 0.947 17 N -0.678 5.678 18 C 0.050 3.950 19 C -0.133 4.133 20 C 0.071 3.929 21 H 0.049 0.951 22 H 0.269 0.731 23 H 0.015 0.985 24 H 0.008 0.992 25 H 0.021 0.979 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.337 0.663 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.489 -15.183 0.620 15.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.188 4.188 3 Si 0.897 3.103 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.642 4.642 8 H 0.065 0.935 9 C -0.022 4.022 10 C -0.059 4.059 11 N -0.244 5.244 12 C -0.079 4.079 13 C -0.153 4.153 14 C -0.139 4.139 15 C -0.036 4.036 16 H 0.071 0.929 17 N -0.307 5.307 18 C -0.080 4.080 19 C -0.171 4.171 20 C -0.039 4.039 21 H 0.067 0.933 22 H 0.080 0.920 23 H 0.033 0.967 24 H 0.026 0.974 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.152 0.848 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.330 -13.599 0.423 14.007 hybrid contribution 0.374 -1.407 0.142 1.463 sum 3.704 -15.006 0.565 15.466 Atomic orbital electron populations 1.70770 1.06865 1.30662 1.46559 1.25824 0.96550 1.02634 0.93798 0.83550 0.74888 0.75386 0.76471 1.20739 1.21514 1.21454 1.22011 0.94207 0.92082 1.55929 0.93501 1.19214 0.94607 0.91923 0.96423 1.22211 0.96503 0.87988 0.99235 1.62710 1.25315 1.02036 1.34327 1.22162 0.97442 0.98043 0.90230 1.21612 0.98356 0.93703 1.01634 1.21352 0.98425 0.97658 0.96430 1.21899 0.94071 0.90756 0.96839 0.92934 1.61556 1.14557 1.16152 1.38434 1.22932 0.96248 0.92447 0.96334 1.22592 1.00414 0.95868 0.98226 1.22402 0.93081 0.91480 0.96894 0.93287 0.92034 0.96689 0.97427 0.96096 0.91763 0.89774 0.95443 0.91453 0.91433 0.92025 0.91736 0.84807 0.90763 0.93013 0.90852 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.35 13.65 55.43 0.76 -27.60 16 2 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16 3 Si 1.07 25.59 29.90 -169.99 -5.08 20.51 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.60 -17.50 9.11 -34.44 -0.31 -17.82 16 8 H 0.05 1.33 7.74 -52.48 -0.41 0.93 16 9 C 0.02 0.41 4.21 -27.88 -0.12 0.29 16 10 C 0.07 1.47 4.76 -3.82 -0.02 1.45 16 11 N -0.52 -9.65 4.70 -225.43 -1.06 -10.71 16 12 C 0.05 0.84 5.15 -3.63 -0.02 0.82 16 13 C -0.11 -1.57 5.99 -26.48 -0.16 -1.73 16 14 C -0.10 -1.29 6.01 -26.96 -0.16 -1.45 16 15 C 0.07 1.03 2.78 -67.71 -0.19 0.84 16 16 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 17 N -0.68 -8.24 7.35 -104.20 -0.77 -9.00 16 18 C 0.05 0.58 7.62 -1.64 -0.01 0.57 16 19 C -0.13 -1.88 5.63 -25.21 -0.14 -2.02 16 20 C 0.07 1.14 2.12 -66.87 -0.14 0.99 16 21 H 0.05 0.83 8.06 -51.93 -0.42 0.41 16 22 H 0.27 8.36 7.22 -40.82 -0.29 8.06 16 23 H 0.01 0.42 8.01 -51.93 -0.42 0.00 16 24 H 0.01 0.21 6.36 -51.93 -0.33 -0.12 16 25 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 26 H 0.06 1.39 7.19 -51.93 -0.37 1.02 16 27 H 0.08 1.60 6.35 -51.93 -0.33 1.27 16 28 H 0.03 0.47 8.11 -51.93 -0.42 0.05 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 33 H 0.34 3.43 8.90 -39.29 -0.35 3.08 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 285.08 15.07 4.30 4.30 Total: -1.00 -30.75 285.08 -9.59 -40.34 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.36 Total: -0.15 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -1.37 Total: -17.68 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -1.07 Total: -47.31 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.51 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.75 -9.59 -40.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885645413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.064 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds