Wall clock time and date at job start Mon Mar 30 2020 03:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47006 * 179.97438 * 10 9 7 12 12 C 1.47631 * 111.00053 * 66.04781 * 11 10 9 13 13 C 1.52595 * 111.72950 * 181.83888 * 12 11 10 14 14 C 1.53881 * 111.20116 * 306.32868 * 13 12 11 15 15 C 1.51638 * 106.97125 * 55.02142 * 14 13 12 16 16 H 1.09004 * 109.54665 * 56.41925 * 15 14 13 17 17 N 1.45883 * 117.36862 * 181.25334 * 15 14 13 18 18 C 1.48611 * 107.04460 * 148.61127 * 17 15 14 19 19 C 1.55332 * 106.98432 * 355.01077 * 18 17 15 20 20 C 1.45622 * 110.99704 * 187.06417 * 11 10 9 21 21 H 1.08995 * 110.78409 * 292.11541 * 20 11 10 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 24 24 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 25 25 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 26 26 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 27 27 H 1.09004 * 109.02701 * 302.41480 * 12 11 10 28 28 H 1.08999 * 109.03293 * 61.25305 * 12 11 10 29 29 H 1.09003 * 109.13117 * 66.77393 * 13 12 11 30 30 H 1.09000 * 109.13103 * 185.94495 * 13 12 11 31 31 H 1.09006 * 109.95683 * 174.38564 * 14 13 12 32 32 H 1.08999 * 109.95736 * 295.65805 * 14 13 12 33 33 H 1.00896 * 111.00534 * 269.89372 * 17 15 14 34 34 H 1.09000 * 109.93040 * 235.68634 * 18 17 15 35 35 H 1.08991 * 109.92559 * 114.34310 * 18 17 15 36 36 H 1.08998 * 110.95490 * 219.32784 * 19 18 17 37 37 H 1.09003 * 110.98015 * 95.63229 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 0.7614 -5.1130 -1.2581 13 6 -0.0441 -6.4091 -1.2570 14 6 0.8494 -7.6193 -0.9329 15 6 1.5371 -7.3214 0.3853 16 1 0.7875 -7.1146 1.1492 17 7 2.4698 -8.3202 0.8960 18 6 3.5195 -7.5893 1.6525 19 6 3.2413 -6.0727 1.4648 20 6 2.4185 -6.0607 0.1684 21 1 3.0571 -6.1762 -0.7074 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6242 -2.5567 0.8904 24 1 0.6248 -2.5571 -0.8896 25 1 2.8720 -3.6043 -0.8895 26 1 2.8721 -3.6042 0.8905 27 1 0.0808 -4.2717 -1.3891 28 1 1.4646 -5.1323 -2.0907 29 1 -0.8343 -6.3380 -0.5095 30 1 -0.4938 -6.5511 -2.2397 31 1 0.2393 -8.5178 -0.8394 32 1 1.5931 -7.7536 -1.7183 33 1 1.9971 -8.9878 1.4865 34 1 4.5041 -7.8381 1.2565 35 1 3.4645 -7.8492 2.7096 36 1 4.1715 -5.5181 1.3413 37 1 2.6613 -5.6762 2.2982 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885645413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:50 Heat of formation + Delta-G solvation = -30.444866 kcal Electronic energy + Delta-G solvation = -16035.262776 eV Core-core repulsion = 13617.403522 eV Total energy + Delta-G solvation = -2417.859255 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.21368 -37.58868 -35.79416 -34.52762 -31.54022 -29.87479 -29.66295 -26.49976 -24.70137 -23.33643 -22.39756 -21.33233 -20.79080 -18.98100 -17.63060 -16.49786 -16.31849 -15.89982 -15.69999 -15.51977 -14.94797 -14.79775 -14.54985 -14.24016 -13.69847 -13.44267 -13.08157 -12.88424 -12.69954 -12.32819 -12.23829 -12.16789 -11.93573 -11.85403 -11.75692 -11.47431 -11.10931 -10.70591 -10.55479 -9.49367 -9.38363 -8.72406 -6.42723 1.51061 1.59894 1.79478 2.53732 2.76731 3.13482 3.17883 3.59280 3.67181 3.97450 3.98011 4.10223 4.20618 4.25569 4.31649 4.35927 4.44902 4.59293 4.67481 4.80148 4.83747 4.86792 4.88551 4.99535 5.00965 5.14021 5.15566 5.23480 5.33719 5.38219 5.75153 5.83605 6.09338 6.14589 6.20210 6.46985 6.54289 7.39902 8.68676 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.041881 B = 0.006379 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.394083 B = 4388.483996 C = 4881.988602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.037 4.037 3 Si 1.119 2.881 4 H -0.282 1.282 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.622 4.622 8 H 0.050 0.950 9 C 0.023 3.977 10 C 0.085 3.915 11 N -0.527 5.527 12 C 0.047 3.953 13 C -0.107 4.107 14 C -0.094 4.094 15 C 0.084 3.916 16 H 0.042 0.958 17 N -0.676 5.676 18 C 0.056 3.944 19 C -0.135 4.135 20 C 0.063 3.937 21 H 0.042 0.958 22 H 0.255 0.745 23 H -0.011 1.011 24 H -0.009 1.009 25 H 0.014 0.986 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.351 0.649 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.588 -16.476 0.752 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.235 4.235 3 Si 0.940 3.060 4 H -0.207 1.207 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.661 4.661 8 H 0.068 0.932 9 C -0.015 4.015 10 C -0.043 4.043 11 N -0.251 5.251 12 C -0.081 4.081 13 C -0.146 4.146 14 C -0.133 4.133 15 C -0.027 4.027 16 H 0.060 0.940 17 N -0.307 5.307 18 C -0.073 4.073 19 C -0.173 4.173 20 C -0.047 4.047 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.007 0.993 24 H 0.009 0.991 25 H 0.033 0.967 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.168 0.832 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.431 -14.942 0.561 15.595 hybrid contribution 0.015 -1.046 0.103 1.051 sum 4.446 -15.988 0.664 16.608 Atomic orbital electron populations 1.70910 1.07961 1.29826 1.48534 1.27485 0.96581 1.06864 0.92524 0.82920 0.74125 0.70896 0.78077 1.20707 1.19380 1.19283 1.22440 0.94651 0.93411 1.55570 0.93184 1.19067 0.94813 0.93310 0.94265 1.21843 0.95187 0.88398 0.98861 1.62657 1.25714 1.01585 1.35164 1.22208 0.97096 0.99175 0.89583 1.21576 0.97875 0.92169 1.02948 1.21321 0.98399 0.97859 0.95678 1.21800 0.93600 0.90047 0.97213 0.94003 1.61559 1.14248 1.15746 1.39108 1.22933 0.96463 0.90150 0.97727 1.22621 0.99842 0.98087 0.96766 1.22523 0.93386 0.91284 0.97463 0.94048 0.93606 0.99311 0.99078 0.96730 0.91749 0.92575 0.95651 0.91681 0.89223 0.89574 0.91760 0.83173 0.89817 0.90872 0.90930 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.47 13.65 21.45 0.29 -59.18 16 2 C -0.04 -2.20 5.46 84.65 0.46 -1.74 16 3 Si 1.12 51.02 29.90 68.60 2.05 53.07 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 7 C -0.62 -36.76 9.11 25.60 0.23 -36.52 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.02 1.25 4.21 29.85 0.13 1.37 16 10 C 0.08 3.79 4.76 86.31 0.41 4.20 16 11 N -0.53 -19.88 4.70 -867.12 -4.08 -23.96 16 12 C 0.05 1.65 5.15 86.03 0.44 2.09 16 13 C -0.11 -2.81 5.99 30.76 0.18 -2.63 16 14 C -0.09 -2.19 6.01 30.44 0.18 -2.01 16 15 C 0.08 2.16 2.78 45.47 0.13 2.29 16 16 H 0.04 1.18 8.13 -2.38 -0.02 1.16 16 17 N -0.68 -14.49 7.35 -483.59 -3.55 -18.04 16 18 C 0.06 1.16 7.62 86.77 0.66 1.83 16 19 C -0.13 -3.67 5.63 31.58 0.18 -3.50 16 20 C 0.06 1.96 2.12 46.15 0.10 2.06 16 21 H 0.04 1.37 8.06 -2.39 -0.02 1.35 16 22 H 0.25 16.49 7.22 -92.71 -0.67 15.82 16 23 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 24 H -0.01 -0.52 6.36 -2.39 -0.02 -0.53 16 25 H 0.01 0.66 8.12 -2.39 -0.02 0.64 16 26 H 0.06 2.84 7.19 -2.39 -0.02 2.82 16 27 H 0.06 2.24 6.35 -2.38 -0.02 2.23 16 28 H 0.03 0.88 8.11 -2.39 -0.02 0.86 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 33 H 0.35 5.98 8.90 -89.70 -0.80 5.18 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -66.92 285.08 -1.85 -68.77 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.33 Total: 11.91 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 3.11 Total: -32.57 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -7.34 Total: -101.18 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.07 kcal Total: -66.92 -1.85 -68.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885645413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.329 kcal (2) G-P(sol) polarization free energy of solvation -66.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds