Wall clock time and date at job start Mon Mar 30 2020 03:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99905 * 2 1 4 4 H 1.48501 * 109.47288 * 240.00093 * 3 2 1 5 5 H 1.48502 * 109.47285 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46860 * 120.00238 * 3 2 1 7 7 C 1.37877 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99935 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99761 * 359.97438 * 7 2 1 10 10 C 1.53010 * 109.46813 * 180.02562 * 9 7 2 11 11 N 1.46894 * 109.46923 * 180.02562 * 10 9 7 12 12 C 1.47672 * 112.35802 * 291.95376 * 11 10 9 13 13 C 1.52592 * 112.39965 * 178.94995 * 12 11 10 14 14 C 1.53860 * 111.26672 * 53.14290 * 13 12 11 15 15 C 1.51815 * 106.93522 * 304.67473 * 14 13 12 16 16 H 1.08995 * 110.73252 * 302.64020 * 15 14 13 17 17 N 1.46723 * 116.52169 * 175.91015 * 15 14 13 18 18 C 1.49078 * 104.32164 * 200.73387 * 17 15 14 19 19 C 1.54997 * 106.82323 * 25.81212 * 18 17 15 20 20 C 1.45444 * 110.99855 * 170.00016 * 11 10 9 21 21 H 1.09002 * 109.97842 * 69.34674 * 20 11 10 22 22 H 0.96998 * 119.99986 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47134 * 60.00600 * 9 7 2 24 24 H 1.09001 * 109.47737 * 300.00138 * 9 7 2 25 25 H 1.09002 * 109.47019 * 60.00237 * 10 9 7 26 26 H 1.09001 * 109.46844 * 300.00394 * 10 9 7 27 27 H 1.08999 * 109.04490 * 57.92610 * 12 11 10 28 28 H 1.09000 * 108.31720 * 299.47519 * 12 11 10 29 29 H 1.09004 * 109.12008 * 292.68246 * 13 12 11 30 30 H 1.08996 * 109.11939 * 173.60088 * 13 12 11 31 31 H 1.09003 * 109.96203 * 185.32490 * 14 13 12 32 32 H 1.08995 * 109.96063 * 64.03000 * 14 13 12 33 33 H 1.00900 * 111.00046 * 81.12879 * 17 15 14 34 34 H 1.08994 * 109.99521 * 266.47086 * 18 17 15 35 35 H 1.08998 * 109.98666 * 145.14647 * 18 17 15 36 36 H 1.08996 * 110.52747 * 243.69078 * 19 18 17 37 37 H 1.08994 * 110.52772 * 120.93565 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 0.7873 -5.1657 1.2652 13 6 0.0033 -6.4748 1.2560 14 6 0.9042 -7.6622 0.8744 15 6 1.5402 -7.3232 -0.4618 16 1 0.7763 -7.1253 -1.2136 17 7 2.5210 -8.2821 -0.9826 18 6 3.3235 -7.4941 -1.9612 19 6 3.2381 -6.0107 -1.5201 20 6 2.4083 -6.0541 -0.2370 21 1 3.0611 -6.1960 0.6244 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5566 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.8719 -3.6044 0.8895 26 1 2.8720 -3.6043 -0.8905 27 1 0.0975 -4.3394 1.4369 28 1 1.5156 -5.1934 2.0757 29 1 -0.8110 -6.3982 0.5353 30 1 -0.4143 -6.6478 2.2478 31 1 0.3059 -8.5687 0.7822 32 1 1.6773 -7.8006 1.6300 33 1 2.0625 -9.0594 -1.4339 34 1 2.9083 -7.6095 -2.9623 35 1 4.3610 -7.8279 -1.9468 36 1 2.7346 -5.4141 -2.2807 37 1 4.2330 -5.6140 -1.3185 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885645415.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:55 Heat of formation + Delta-G solvation = -4.124970 kcal Electronic energy + Delta-G solvation = -15990.108764 eV Core-core repulsion = 13573.390826 eV Total energy + Delta-G solvation = -2416.717938 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.86649 -36.04274 -33.90224 -32.65736 -29.99470 -28.59902 -28.35090 -24.96489 -23.00759 -21.96657 -20.75066 -19.78194 -19.40250 -16.71227 -15.97272 -15.29890 -14.69099 -14.54086 -14.30803 -14.12237 -13.65472 -13.15238 -12.67610 -12.51288 -12.09935 -11.90703 -11.75492 -11.17819 -11.13535 -10.92087 -10.73061 -10.70174 -10.52027 -10.46273 -10.02311 -9.75378 -9.27507 -9.10450 -8.55470 -8.31817 -7.69897 -5.98445 -4.00909 3.33993 3.38310 3.40692 4.03031 4.42342 4.57284 4.72936 4.92522 5.14302 5.24324 5.32363 5.37473 5.43396 5.49849 5.59289 5.76007 5.84244 5.91907 6.06475 6.11946 6.17916 6.18654 6.26949 6.29868 6.42558 6.52939 6.56710 6.77423 6.99860 7.30422 7.56398 7.60982 7.83853 7.91535 8.10601 8.45058 9.06251 9.62614 11.12903 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.041494 B = 0.006350 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.628910 B = 4408.347486 C = 4896.680768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.065 3.935 11 N -0.526 5.526 12 C 0.055 3.945 13 C -0.114 4.114 14 C -0.101 4.101 15 C 0.065 3.935 16 H 0.056 0.944 17 N -0.666 5.666 18 C 0.043 3.957 19 C -0.125 4.125 20 C 0.079 3.921 21 H 0.042 0.958 22 H 0.261 0.739 23 H 0.024 0.976 24 H 0.016 0.984 25 H 0.018 0.982 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.333 0.667 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 -15.007 -0.777 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.062 4.062 11 N -0.251 5.251 12 C -0.073 4.073 13 C -0.153 4.153 14 C -0.139 4.139 15 C -0.045 4.045 16 H 0.074 0.926 17 N -0.294 5.294 18 C -0.086 4.086 19 C -0.163 4.163 20 C -0.031 4.031 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.034 0.966 25 H 0.037 0.963 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.148 0.852 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.761 -14.833 -0.591 15.100 hybrid contribution 0.450 1.080 -0.135 1.178 sum 3.211 -13.753 -0.726 14.142 Atomic orbital electron populations 1.69965 1.06017 1.26663 1.50632 1.24989 0.94825 0.99139 0.95311 0.86663 0.79581 0.83178 0.78589 1.20238 1.21265 1.20303 1.21162 0.92934 0.91112 1.50931 0.92890 1.19068 0.93950 0.90073 0.97712 1.22327 0.96672 0.88193 0.99004 1.62075 1.27450 1.02006 1.33559 1.22080 0.97555 0.97712 0.89930 1.21592 0.98450 0.93742 1.01481 1.21367 0.98672 0.97722 0.96110 1.22236 0.93766 0.91840 0.96652 0.92577 1.62987 1.23504 1.09005 1.33900 1.22983 0.98782 0.93103 0.93781 1.22230 1.00335 0.95658 0.98060 1.22045 0.92926 0.91308 0.96804 0.93971 0.92957 0.95789 0.96597 0.96321 0.91874 0.89627 0.95722 0.91433 0.91442 0.92187 0.91587 0.85216 0.93882 0.90635 0.90225 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.77 4.96 -27.88 -0.14 0.63 16 10 C 0.06 1.40 4.82 -3.82 -0.02 1.38 16 11 N -0.53 -9.84 4.67 -225.93 -1.05 -10.89 16 12 C 0.05 0.94 5.23 -3.61 -0.02 0.93 16 13 C -0.11 -1.57 6.00 -26.49 -0.16 -1.72 16 14 C -0.10 -1.28 5.98 -26.88 -0.16 -1.44 16 15 C 0.07 0.91 2.86 -67.14 -0.19 0.72 16 16 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 17 N -0.67 -8.16 7.43 -103.35 -0.77 -8.93 16 18 C 0.04 0.51 7.56 -1.56 -0.01 0.50 16 19 C -0.12 -1.80 5.53 -25.75 -0.14 -1.94 16 20 C 0.08 1.27 2.07 -67.30 -0.14 1.13 16 21 H 0.04 0.73 7.97 -51.93 -0.41 0.31 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.02 0.44 6.68 -51.93 -0.35 0.09 16 25 H 0.02 0.41 8.13 -51.93 -0.42 -0.02 16 26 H 0.06 1.34 6.97 -51.93 -0.36 0.98 16 27 H 0.09 1.63 6.57 -51.93 -0.34 1.29 16 28 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.33 3.39 8.91 -39.29 -0.35 3.04 16 34 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 286.45 15.07 4.32 4.32 Total: -1.00 -30.00 286.45 -9.60 -39.60 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.42 Total: -1.06 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -1.39 Total: -13.48 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -1.09 Total: -46.14 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.00 -9.60 -39.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885645415.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.476 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds