Wall clock time and date at job start Mon Mar 30 2020 03:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99905 * 2 1 4 4 H 1.48501 * 109.47288 * 240.00093 * 3 2 1 5 5 H 1.48502 * 109.47285 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46860 * 120.00238 * 3 2 1 7 7 C 1.37877 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99935 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99761 * 359.97438 * 7 2 1 10 10 C 1.53010 * 109.46813 * 180.02562 * 9 7 2 11 11 N 1.46894 * 109.46923 * 180.02562 * 10 9 7 12 12 C 1.47672 * 112.35802 * 291.95376 * 11 10 9 13 13 C 1.52592 * 112.39965 * 178.94995 * 12 11 10 14 14 C 1.53860 * 111.26672 * 53.14290 * 13 12 11 15 15 C 1.51815 * 106.93522 * 304.67473 * 14 13 12 16 16 H 1.08995 * 110.73252 * 302.64020 * 15 14 13 17 17 N 1.46723 * 116.52169 * 175.91015 * 15 14 13 18 18 C 1.49078 * 104.32164 * 200.73387 * 17 15 14 19 19 C 1.54997 * 106.82323 * 25.81212 * 18 17 15 20 20 C 1.45444 * 110.99855 * 170.00016 * 11 10 9 21 21 H 1.09002 * 109.97842 * 69.34674 * 20 11 10 22 22 H 0.96998 * 119.99986 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47134 * 60.00600 * 9 7 2 24 24 H 1.09001 * 109.47737 * 300.00138 * 9 7 2 25 25 H 1.09002 * 109.47019 * 60.00237 * 10 9 7 26 26 H 1.09001 * 109.46844 * 300.00394 * 10 9 7 27 27 H 1.08999 * 109.04490 * 57.92610 * 12 11 10 28 28 H 1.09000 * 108.31720 * 299.47519 * 12 11 10 29 29 H 1.09004 * 109.12008 * 292.68246 * 13 12 11 30 30 H 1.08996 * 109.11939 * 173.60088 * 13 12 11 31 31 H 1.09003 * 109.96203 * 185.32490 * 14 13 12 32 32 H 1.08995 * 109.96063 * 64.03000 * 14 13 12 33 33 H 1.00900 * 111.00046 * 81.12879 * 17 15 14 34 34 H 1.08994 * 109.99521 * 266.47086 * 18 17 15 35 35 H 1.08998 * 109.98666 * 145.14647 * 18 17 15 36 36 H 1.08996 * 110.52747 * 243.69078 * 19 18 17 37 37 H 1.08994 * 110.52772 * 120.93565 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 0.7873 -5.1657 1.2652 13 6 0.0033 -6.4748 1.2560 14 6 0.9042 -7.6622 0.8744 15 6 1.5402 -7.3232 -0.4618 16 1 0.7763 -7.1253 -1.2136 17 7 2.5210 -8.2821 -0.9826 18 6 3.3235 -7.4941 -1.9612 19 6 3.2381 -6.0107 -1.5201 20 6 2.4083 -6.0541 -0.2370 21 1 3.0611 -6.1960 0.6244 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5566 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.8719 -3.6044 0.8895 26 1 2.8720 -3.6043 -0.8905 27 1 0.0975 -4.3394 1.4369 28 1 1.5156 -5.1934 2.0757 29 1 -0.8110 -6.3982 0.5353 30 1 -0.4143 -6.6478 2.2478 31 1 0.3059 -8.5687 0.7822 32 1 1.6773 -7.8006 1.6300 33 1 2.0625 -9.0594 -1.4339 34 1 2.9083 -7.6095 -2.9623 35 1 4.3610 -7.8279 -1.9468 36 1 2.7346 -5.4141 -2.2807 37 1 4.2330 -5.6140 -1.3185 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885645415.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:55 Heat of formation + Delta-G solvation = -25.670478 kcal Electronic energy + Delta-G solvation = -15991.043047 eV Core-core repulsion = 13573.390826 eV Total energy + Delta-G solvation = -2417.652222 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.10216 -37.40213 -35.52835 -34.43804 -31.69406 -29.85923 -29.68258 -26.80948 -24.55500 -23.24953 -22.16709 -21.16698 -20.74043 -18.62825 -17.45138 -16.56379 -16.46672 -15.98881 -15.68121 -15.48347 -14.86512 -14.61511 -14.30490 -13.97782 -13.80877 -13.17651 -13.04485 -12.95877 -12.79709 -12.48263 -12.22824 -12.10439 -11.87691 -11.72633 -11.65515 -11.45655 -11.26318 -10.89055 -10.54867 -9.53502 -9.22919 -8.21218 -6.33085 1.39087 1.42479 1.50491 2.39057 2.84114 3.11848 3.26271 3.65023 3.77587 4.04920 4.06966 4.19777 4.25325 4.33500 4.36744 4.47715 4.60801 4.67022 4.73260 4.88868 4.95615 4.98591 5.00222 5.06183 5.07944 5.15244 5.22147 5.38203 5.43476 5.63339 5.70638 5.78807 6.07883 6.30237 6.32521 6.49044 6.83495 7.36054 8.90769 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.041494 B = 0.006350 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.628910 B = 4408.347486 C = 4896.680768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.040 3.960 10 C 0.082 3.918 11 N -0.536 5.536 12 C 0.053 3.947 13 C -0.107 4.107 14 C -0.094 4.094 15 C 0.074 3.926 16 H 0.046 0.954 17 N -0.664 5.664 18 C 0.049 3.951 19 C -0.128 4.128 20 C 0.072 3.928 21 H 0.033 0.967 22 H 0.264 0.736 23 H -0.008 1.008 24 H -0.008 1.008 25 H 0.014 0.986 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.349 0.651 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.798 -16.173 -0.935 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.002 3.998 10 C -0.045 4.045 11 N -0.260 5.260 12 C -0.074 4.074 13 C -0.146 4.146 14 C -0.132 4.132 15 C -0.036 4.036 16 H 0.064 0.936 17 N -0.294 5.294 18 C -0.080 4.080 19 C -0.166 4.166 20 C -0.038 4.038 21 H 0.051 0.949 22 H 0.073 0.927 23 H 0.010 0.990 24 H 0.010 0.990 25 H 0.032 0.968 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.166 0.834 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.786 -16.033 -0.754 16.491 hybrid contribution 0.104 1.423 -0.087 1.429 sum 3.890 -14.610 -0.841 15.142 Atomic orbital electron populations 1.70106 1.07831 1.27891 1.51273 1.25966 0.95759 1.03317 0.94514 0.85481 0.78274 0.77959 0.79204 1.19081 1.20655 1.19207 1.21587 0.93467 0.92323 1.51199 0.92308 1.18874 0.94102 0.91861 0.94938 1.21945 0.95330 0.88425 0.98809 1.62012 1.27882 1.01698 1.34446 1.22131 0.97144 0.98904 0.89264 1.21559 0.97983 0.92141 1.02872 1.21333 0.98634 0.98011 0.95227 1.22144 0.93322 0.91019 0.97150 0.93579 1.62977 1.23018 1.08988 1.34410 1.22977 0.99802 0.90966 0.94278 1.22268 0.99883 0.97653 0.96819 1.22157 0.93191 0.91221 0.97228 0.94877 0.92698 0.98975 0.98952 0.96809 0.91623 0.92523 0.95900 0.91684 0.89174 0.89541 0.91644 0.83432 0.92399 0.89110 0.91688 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -32.01 9.11 25.60 0.23 -31.78 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.04 2.19 4.96 29.85 0.15 2.34 16 10 C 0.08 3.68 4.82 86.31 0.42 4.09 16 11 N -0.54 -20.47 4.67 -868.71 -4.05 -24.52 16 12 C 0.05 1.87 5.23 86.02 0.45 2.32 16 13 C -0.11 -2.82 6.00 30.75 0.18 -2.63 16 14 C -0.09 -2.17 5.98 30.49 0.18 -1.99 16 15 C 0.07 1.92 2.86 45.38 0.13 2.05 16 16 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 17 N -0.66 -14.42 7.43 -480.89 -3.57 -17.99 16 18 C 0.05 1.04 7.56 86.56 0.65 1.70 16 19 C -0.13 -3.58 5.53 31.23 0.17 -3.40 16 20 C 0.07 2.26 2.07 45.97 0.10 2.36 16 21 H 0.03 1.12 7.97 -2.39 -0.02 1.10 16 22 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 23 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 24 H -0.01 -0.46 6.68 -2.39 -0.02 -0.48 16 25 H 0.01 0.62 8.13 -2.39 -0.02 0.60 16 26 H 0.07 2.86 6.97 -2.39 -0.02 2.84 16 27 H 0.06 2.29 6.57 -2.39 -0.02 2.27 16 28 H 0.02 0.80 8.10 -2.39 -0.02 0.78 16 29 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.56 8.08 -2.39 -0.02 1.54 16 33 H 0.35 5.92 8.91 -89.69 -0.80 5.12 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 2.00 8.03 -2.39 -0.02 1.98 16 37 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -65.42 286.45 -1.96 -67.38 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.23 Total: 10.03 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 3.13 Total: -24.33 kcal Atomic # 7 Polarization: -92.56 SS G_CDS: -7.34 Total: -99.90 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -65.42 -1.96 -67.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885645415.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.710 kcal (2) G-P(sol) polarization free energy of solvation -65.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds