Wall clock time and date at job start Mon Mar 30 2020 03:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00056 * 2 1 4 4 H 1.48500 * 109.46872 * 269.99835 * 3 2 1 5 5 H 1.48490 * 109.47448 * 29.99931 * 3 2 1 6 6 H 1.48506 * 109.46878 * 150.00166 * 3 2 1 7 7 C 1.37878 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00250 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47511 * 180.02562 * 9 7 2 11 11 C 1.46894 * 111.00059 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.30457 * 32.83293 * 11 10 9 13 13 C 1.55326 * 110.33787 * 155.00219 * 11 10 9 14 14 C 1.53923 * 102.09092 * 141.07574 * 13 11 10 15 15 H 1.09000 * 110.99719 * 78.65588 * 14 13 11 16 16 C 1.52365 * 113.27472 * 204.91180 * 14 13 11 17 17 C 1.53636 * 107.59202 * 174.94441 * 16 14 13 18 18 C 1.52834 * 110.65432 * 303.62435 * 17 16 14 19 19 C 1.53634 * 110.64627 * 53.77628 * 18 17 16 20 20 N 1.45537 * 107.90737 * 302.95424 * 19 18 17 21 21 C 1.46333 * 117.20931 * 185.50184 * 20 19 18 22 22 H 0.97009 * 120.00143 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46967 * 59.99824 * 9 7 2 24 24 H 1.09003 * 109.47168 * 300.00547 * 9 7 2 25 25 H 1.00896 * 110.99501 * 303.95468 * 10 9 7 26 26 H 1.08997 * 110.91183 * 22.87429 * 13 11 10 27 27 H 1.09000 * 110.93812 * 259.28414 * 13 11 10 28 28 H 1.08992 * 109.83409 * 294.46542 * 16 14 13 29 29 H 1.09000 * 109.83036 * 55.36018 * 16 14 13 30 30 H 1.09001 * 109.24793 * 63.88376 * 17 16 14 31 31 H 1.09004 * 109.24896 * 183.33385 * 17 16 14 32 32 H 1.09006 * 109.19490 * 293.50418 * 18 17 16 33 33 H 1.08995 * 109.28952 * 174.10978 * 18 17 16 34 34 H 1.09002 * 109.78391 * 183.33531 * 19 18 17 35 35 H 1.09002 * 109.78301 * 62.57441 * 19 18 17 36 36 H 1.08992 * 110.15912 * 327.21122 * 21 20 19 37 37 H 1.09004 * 110.15077 * 88.96759 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5051 -4.9070 -0.0011 12 1 0.5699 -4.8298 -0.5557 13 6 2.4083 -6.0107 -0.6166 14 6 2.0990 -7.2199 0.2842 15 1 1.1509 -7.6809 0.0072 16 6 3.2259 -8.2445 0.3245 17 6 2.8385 -9.3208 1.3502 18 6 2.5625 -8.6904 2.7148 19 6 1.5193 -7.5693 2.5927 20 7 2.0179 -6.5968 1.6315 21 6 1.2355 -5.3736 1.4501 22 1 -0.4851 0.8401 -0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6245 -2.5571 0.8896 25 1 2.8403 -3.5487 -0.7819 26 1 3.4605 -5.7346 -0.5494 27 1 2.1265 -6.2133 -1.6499 28 1 3.3487 -8.6981 -0.6590 29 1 4.1547 -7.7610 0.6272 30 1 1.9430 -9.8386 1.0068 31 1 3.6542 -10.0377 1.4443 32 1 3.4894 -8.2770 3.1126 33 1 2.1898 -9.4553 3.3960 34 1 1.3768 -7.0907 3.5616 35 1 0.5732 -7.9822 2.2427 36 1 0.1746 -5.5826 1.5864 37 1 1.5624 -4.6105 2.1566 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885645421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:57 Heat of formation + Delta-G solvation = -5.814308 kcal Electronic energy + Delta-G solvation = -15707.461216 eV Core-core repulsion = 13290.670023 eV Total energy + Delta-G solvation = -2416.791193 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.73334 -35.91348 -33.52617 -32.26513 -31.66693 -28.22843 -27.02533 -25.59885 -22.73460 -21.97832 -21.06939 -20.09787 -19.33942 -16.38777 -15.73757 -15.49242 -14.78578 -14.65674 -14.35770 -13.78846 -13.40357 -13.23206 -12.80318 -12.44477 -12.08793 -12.01090 -11.52846 -11.48269 -11.09454 -10.87236 -10.73944 -10.65719 -10.59570 -10.50904 -10.25975 -10.14185 -9.77045 -9.12180 -8.46632 -8.01963 -7.26206 -6.01069 -4.02765 3.33628 3.39600 3.44738 4.16716 4.45126 4.72240 4.76924 4.92103 5.07263 5.21289 5.32302 5.35069 5.36538 5.45444 5.53473 5.63489 5.75230 5.83757 5.88872 5.95380 6.03244 6.05955 6.14498 6.21128 6.28456 6.38248 6.47462 6.61631 7.23459 7.30538 7.44210 7.55354 7.82990 8.16720 8.44142 8.65661 9.07020 9.62215 11.10125 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.059443 B = 0.005176 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.928590 B = 5407.954029 C = 5516.889457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.677 5.677 11 C 0.081 3.919 12 H 0.041 0.959 13 C -0.118 4.118 14 C 0.067 3.933 15 H 0.047 0.953 16 C -0.104 4.104 17 C -0.119 4.119 18 C -0.113 4.113 19 C 0.060 3.940 20 N -0.531 5.531 21 C 0.063 3.937 22 H 0.261 0.739 23 H -0.015 1.015 24 H 0.027 0.973 25 H 0.330 0.670 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.599 -17.114 1.462 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.308 5.308 11 C -0.031 4.031 12 H 0.058 0.942 13 C -0.156 4.156 14 C -0.042 4.042 15 H 0.065 0.935 16 C -0.142 4.142 17 C -0.156 4.156 18 C -0.151 4.151 19 C -0.069 4.069 20 N -0.256 5.256 21 C -0.065 4.065 22 H 0.070 0.930 23 H 0.003 0.997 24 H 0.045 0.955 25 H 0.148 0.852 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.972 -16.824 2.383 17.450 hybrid contribution -0.953 0.728 -1.086 1.618 sum 3.019 -16.096 1.297 16.428 Atomic orbital electron populations 1.69966 1.06107 1.26738 1.51062 1.24990 0.94860 0.99365 0.95370 0.86485 0.79836 0.83021 0.77999 1.20754 1.21276 1.19730 1.21199 0.93549 0.90245 1.50142 0.91924 1.19610 0.90627 0.87517 0.95615 1.60718 1.20732 1.00582 1.48782 1.22524 0.95554 0.91033 0.93994 0.94151 1.22605 1.01404 0.94222 0.97372 1.22500 0.97309 0.94538 0.89809 0.93466 1.21497 0.98778 0.95569 0.98308 1.21563 1.00820 0.97733 0.95515 1.21580 0.99822 0.96812 0.96905 1.21922 0.95480 0.92833 0.96653 1.62753 1.51975 1.05003 1.05857 1.22616 0.93874 0.91452 0.98586 0.92960 0.99744 0.95482 0.85215 0.89793 0.91781 0.91967 0.90684 0.92767 0.92171 0.91209 0.92114 0.90956 0.95524 0.95429 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.72 9.32 -34.44 -0.32 -15.05 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.13 5.29 -4.98 -0.03 5.11 16 10 N -0.68 -14.82 6.21 -105.69 -0.66 -15.48 16 11 C 0.08 1.48 3.36 -65.53 -0.22 1.26 16 12 H 0.04 0.78 7.82 -51.93 -0.41 0.38 16 13 C -0.12 -1.75 6.05 -25.02 -0.15 -1.90 16 14 C 0.07 0.91 2.63 -66.58 -0.17 0.73 16 15 H 0.05 0.64 8.06 -51.93 -0.42 0.22 16 16 C -0.10 -1.17 5.68 -26.73 -0.15 -1.33 16 17 C -0.12 -1.19 5.94 -26.49 -0.16 -1.35 16 18 C -0.11 -1.21 6.07 -26.49 -0.16 -1.37 16 19 C 0.06 0.76 5.85 -4.23 -0.02 0.74 16 20 N -0.53 -8.08 4.65 -225.05 -1.05 -9.13 16 21 C 0.06 1.11 6.64 -3.18 -0.02 1.09 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H -0.02 -0.43 8.07 -51.93 -0.42 -0.85 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.33 6.89 8.33 -39.29 -0.33 6.57 16 26 H 0.08 1.28 7.95 -51.93 -0.41 0.87 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.03 0.33 8.05 -51.93 -0.42 -0.08 16 36 H 0.03 0.47 8.04 -51.93 -0.42 0.05 16 37 H 0.09 1.84 7.95 -51.93 -0.41 1.43 16 LS Contribution 290.94 15.07 4.38 4.38 Total: -1.00 -29.94 290.94 -9.69 -39.63 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.58 Total: 0.68 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.51 Total: -10.56 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.97 Total: -51.04 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.94 -9.69 -39.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885645421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.818 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds