Wall clock time and date at job start Mon Mar 30 2020 03:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 119.99885 * 2 1 4 4 H 1.48497 * 109.47029 * 240.00022 * 3 2 1 5 5 H 1.48496 * 109.47199 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47134 * 120.00138 * 3 2 1 7 7 C 1.37874 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00559 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99712 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47017 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47155 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99808 * 179.97438 * 11 10 9 13 13 H 1.09002 * 110.33869 * 34.29970 * 12 11 10 14 14 C 1.54063 * 110.38139 * 272.02953 * 12 11 10 15 15 N 1.48244 * 106.69781 * 242.07641 * 14 12 11 16 16 C 1.48807 * 105.17544 * 332.52105 * 15 14 12 17 17 C 1.54991 * 110.37733 * 156.57192 * 12 11 10 18 18 H 1.09007 * 113.20296 * 265.40889 * 17 12 11 19 19 C 1.54011 * 107.05883 * 31.51356 * 17 12 11 20 20 C 1.53157 * 108.50309 * 45.88395 * 19 17 12 21 21 C 1.47678 * 108.91332 * 88.17275 * 15 14 12 22 22 H 0.96998 * 119.99748 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46910 * 60.00404 * 9 7 2 24 24 H 1.08996 * 109.46872 * 299.99966 * 9 7 2 25 25 H 1.08998 * 109.47164 * 59.99842 * 10 9 7 26 26 H 1.09006 * 109.47169 * 300.00199 * 10 9 7 27 27 H 1.00895 * 111.00033 * 303.95133 * 11 10 9 28 28 H 1.08999 * 110.01205 * 1.38557 * 14 12 11 29 29 H 1.09000 * 110.01261 * 122.71972 * 14 12 11 30 30 H 1.09000 * 110.92984 * 160.89565 * 16 15 14 31 31 H 1.09001 * 110.93138 * 284.55694 * 16 15 14 32 32 H 1.08994 * 109.63771 * 165.59121 * 19 17 12 33 33 H 1.08998 * 109.63078 * 286.18769 * 19 17 12 34 34 H 1.09000 * 109.36623 * 174.18878 * 20 19 17 35 35 H 1.08993 * 109.36784 * 293.93838 * 20 19 17 36 36 H 1.09005 * 109.50045 * 72.86058 * 21 15 14 37 37 H 1.08996 * 109.49860 * 192.97036 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 -0.0012 12 6 2.4353 -6.0759 -0.0018 13 1 3.3299 -5.8392 0.5742 14 6 2.8126 -6.4599 -1.4453 15 7 2.3285 -7.8448 -1.6580 16 6 2.3315 -8.4702 -0.3077 17 6 1.7389 -7.3346 0.5753 18 1 1.9218 -7.4762 1.6405 19 6 0.2460 -7.2318 0.2114 20 6 0.1314 -6.8292 -1.2618 21 6 0.9325 -7.7956 -2.1373 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6248 -2.5570 0.8897 25 1 2.8720 -3.6044 0.8894 26 1 2.8720 -3.6044 -0.8905 27 1 0.8742 -4.9846 0.7800 28 1 2.3290 -5.7833 -2.1498 29 1 3.8945 -6.4187 -1.5716 30 1 1.6927 -9.3532 -0.2862 31 1 3.3461 -8.7177 0.0046 32 1 -0.2360 -8.1971 0.3658 33 1 -0.2319 -6.4766 0.8355 34 1 -0.9161 -6.8526 -1.5625 35 1 0.5225 -5.8202 -1.3923 36 1 0.9147 -7.4502 -3.1710 37 1 0.4922 -8.7909 -2.0779 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926131101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:28 Heat of formation + Delta-G solvation = 10.276974 kcal Electronic energy + Delta-G solvation = -16074.936697 eV Core-core repulsion = 13658.843274 eV Total energy + Delta-G solvation = -2416.093423 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.81850 -35.41060 -32.95688 -32.01520 -31.17283 -29.40679 -27.05237 -24.37723 -23.58839 -22.63394 -20.75178 -19.71652 -19.08186 -16.62753 -16.29529 -15.41633 -14.88159 -14.38064 -14.26141 -13.98177 -13.52292 -12.72398 -12.56108 -12.36460 -12.20895 -12.14224 -11.57521 -11.36511 -11.15374 -10.93928 -10.89209 -10.56657 -10.50108 -10.32107 -10.16355 -9.94063 -9.36155 -9.17499 -8.42250 -8.34827 -7.72805 -6.01262 -4.04034 3.32546 3.37007 3.39340 4.12930 4.41494 4.57671 4.64015 4.97558 5.07687 5.27539 5.33667 5.34723 5.43690 5.49745 5.59946 5.64055 5.73755 5.89926 5.94190 6.10069 6.16322 6.21102 6.25212 6.28086 6.32285 6.43868 6.83724 6.96135 7.01980 7.08034 7.46851 7.69891 7.78942 7.90995 8.05377 8.41558 9.02953 9.59945 11.10060 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.053292 B = 0.005670 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.285120 B = 4937.233220 C = 5060.799771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.061 3.939 11 N -0.675 5.675 12 C 0.060 3.940 13 H 0.047 0.953 14 C 0.037 3.963 15 N -0.499 5.499 16 C 0.034 3.966 17 C -0.134 4.134 18 H 0.085 0.915 19 C -0.101 4.101 20 C -0.179 4.179 21 C 0.037 3.963 22 H 0.261 0.739 23 H 0.025 0.975 24 H 0.012 0.988 25 H 0.016 0.984 26 H 0.058 0.942 27 H 0.339 0.661 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.128 0.872 36 H 0.072 0.928 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 -15.570 -0.219 15.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.067 4.067 11 N -0.306 5.306 12 C -0.052 4.052 13 H 0.065 0.935 14 C -0.092 4.092 15 N -0.220 5.220 16 C -0.095 4.095 17 C -0.154 4.154 18 H 0.104 0.896 19 C -0.138 4.138 20 C -0.218 4.218 21 C -0.092 4.092 22 H 0.071 0.929 23 H 0.043 0.957 24 H 0.031 0.969 25 H 0.034 0.966 26 H 0.077 0.923 27 H 0.158 0.842 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.146 0.854 36 H 0.091 0.909 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.417 -15.759 -1.349 16.000 hybrid contribution 0.196 1.446 1.611 2.174 sum 2.613 -14.313 0.261 14.552 Atomic orbital electron populations 1.69963 1.06033 1.26721 1.50559 1.24998 0.94839 0.99210 0.95255 0.86646 0.79569 0.83104 0.78604 1.20203 1.21255 1.20306 1.21139 0.92943 0.91043 1.51032 0.92838 1.19052 0.93965 0.90456 0.97604 1.22262 0.97061 0.88661 0.98709 1.60916 1.19040 1.01794 1.48900 1.22845 0.94659 0.91101 0.96606 0.93527 1.23169 1.00126 0.89729 0.96148 1.66424 1.18983 1.14713 1.21857 1.23526 1.00779 0.96522 0.88718 1.23333 0.96879 0.95596 0.99563 0.89629 1.21575 0.94407 1.00326 0.97527 1.22740 1.00306 1.04742 0.93993 1.22545 0.88438 0.99148 0.99042 0.92929 0.95702 0.96937 0.96611 0.92298 0.84200 0.89557 0.90943 0.90628 0.90433 0.93085 0.91638 0.92786 0.85441 0.90945 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.68 5.23 -27.88 -0.15 0.54 16 10 C 0.06 1.25 5.47 -3.82 -0.02 1.23 16 11 N -0.67 -11.39 3.26 -105.03 -0.34 -11.73 16 12 C 0.06 0.86 2.96 -66.11 -0.20 0.66 16 13 H 0.05 0.70 7.84 -51.93 -0.41 0.29 16 14 C 0.04 0.53 6.05 -2.53 -0.02 0.52 16 15 N -0.50 -6.56 6.07 -228.75 -1.39 -7.95 16 16 C 0.03 0.39 6.42 -1.39 -0.01 0.38 16 17 C -0.13 -1.63 4.18 -87.67 -0.37 -1.99 16 18 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 19 C -0.10 -1.25 5.04 -26.12 -0.13 -1.38 16 20 C -0.18 -2.42 5.44 -26.63 -0.14 -2.56 16 21 C 0.04 0.46 5.85 -3.37 -0.02 0.45 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.02 0.32 8.08 -51.93 -0.42 -0.10 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.34 5.67 6.81 -39.29 -0.27 5.40 16 28 H 0.09 1.36 6.77 -51.93 -0.35 1.01 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.08 0.79 7.70 -51.93 -0.40 0.39 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.57 8.07 -51.93 -0.42 0.15 16 33 H 0.06 0.86 6.81 -51.93 -0.35 0.50 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.13 2.06 4.12 -51.93 -0.21 1.84 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.71 7.87 -51.93 -0.41 0.30 16 LS Contribution 279.93 15.07 4.22 4.22 Total: -1.00 -28.90 279.93 -9.42 -38.32 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.16 Total: 2.33 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -1.46 Total: -15.69 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.99 Total: -45.83 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.90 -9.42 -38.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926131101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.595 kcal (2) G-P(sol) polarization free energy of solvation -28.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds