Wall clock time and date at job start Mon Mar 30 2020 02:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50703 * 119.99856 * 2 1 4 4 C 1.53001 * 109.47085 * 124.99586 * 3 2 1 5 5 C 1.52998 * 109.47037 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.47355 * 180.02562 * 5 4 3 7 7 C 1.46891 * 111.00538 * 169.99723 * 6 5 4 8 8 C 1.53236 * 109.34490 * 187.25409 * 7 6 5 9 9 N 1.47086 * 108.51747 * 306.17144 * 8 7 6 10 10 C 1.36936 * 120.87786 * 231.18160 * 9 8 7 11 11 H 1.07993 * 120.00304 * 27.13527 * 10 9 8 12 12 C 1.38809 * 119.99955 * 206.85385 * 10 9 8 13 13 N 1.31624 * 119.99882 * 17.16531 * 12 10 9 14 14 Si 1.86805 * 120.00166 * 197.16921 * 12 10 9 15 15 H 1.48494 * 109.47060 * 59.99902 * 14 12 10 16 16 H 1.48503 * 109.46870 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46852 * 299.99893 * 14 12 10 18 18 C 1.47083 * 118.23837 * 51.45711 * 9 8 7 19 19 C 1.46900 * 110.99950 * 294.30335 * 6 5 4 20 20 H 1.07995 * 120.00025 * 359.97438 * 1 2 3 21 21 H 1.07993 * 119.99839 * 179.97438 * 1 2 3 22 22 H 1.07995 * 120.00025 * 180.02562 * 2 1 3 23 23 H 1.09010 * 109.47111 * 5.00142 * 3 2 1 24 24 H 1.08995 * 109.47171 * 244.99916 * 3 2 1 25 25 H 1.08998 * 109.46584 * 60.00655 * 4 3 2 26 26 H 1.08995 * 109.47385 * 300.00199 * 4 3 2 27 27 H 1.08998 * 109.47526 * 60.00266 * 5 4 3 28 28 H 1.09005 * 109.46946 * 300.00303 * 5 4 3 29 29 H 1.09002 * 109.49046 * 67.29429 * 7 6 5 30 30 H 1.08998 * 109.52013 * 307.22889 * 7 6 5 31 31 H 1.08998 * 109.63090 * 186.46185 * 8 7 6 32 32 H 1.09001 * 109.62654 * 65.87812 * 8 7 6 33 33 H 0.97001 * 119.99713 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.62320 * 68.25155 * 18 9 8 35 35 H 1.08997 * 109.62861 * 188.82856 * 18 9 8 36 36 H 1.09000 * 109.49232 * 292.70484 * 19 6 5 37 37 H 1.08999 * 109.49067 * 52.78237 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7995 2.6585 1.1821 6 7 4.7327 2.6852 2.3162 7 6 5.6485 3.8294 2.2177 8 6 6.7155 3.7213 3.3123 9 7 6.0398 3.5756 4.6106 10 6 6.3630 4.3860 5.6660 11 1 6.7559 5.3757 5.4863 12 6 6.1802 3.9375 6.9668 13 7 6.0260 2.6520 7.2042 14 14 6.1528 5.1582 8.3806 15 1 5.0464 6.1273 8.1764 16 1 5.9439 4.4311 9.6584 17 1 7.4459 5.8866 8.4306 18 6 5.0120 2.5322 4.7469 19 6 4.0081 2.6911 3.5941 20 1 -0.5400 0.9353 0.0004 21 1 -0.5399 -0.9353 -0.0004 22 1 1.8501 -0.9353 -0.0004 23 1 1.3585 2.1317 0.0896 24 1 2.6213 1.4027 -0.9313 25 1 3.7400 0.5067 1.0921 26 1 2.4772 1.2357 2.1130 27 1 3.0943 3.4847 1.2718 28 1 4.3573 2.7564 0.2507 29 1 5.0884 4.7557 2.3460 30 1 6.1295 3.8278 1.2396 31 1 7.3276 4.6232 3.3173 32 1 7.3436 2.8501 3.1265 33 1 5.8979 2.3387 8.1132 34 1 5.4797 1.5489 4.6964 35 1 4.4975 2.6476 5.7009 36 1 3.4708 3.6332 3.7032 37 1 3.2993 1.8633 3.6141 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070592563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:42 Heat of formation + Delta-G solvation = 39.075043 kcal Electronic energy + Delta-G solvation = -15591.315888 eV Core-core repulsion = 13176.471243 eV Total energy + Delta-G solvation = -2414.844645 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.23675 -35.98749 -34.23525 -31.83301 -30.30536 -29.83875 -26.90651 -24.62095 -22.87488 -22.38323 -20.65952 -19.85571 -19.02567 -16.73377 -15.76239 -15.05472 -14.75601 -14.30394 -14.11683 -13.88922 -13.40915 -13.25138 -13.00032 -12.55998 -12.23754 -11.59641 -11.49903 -11.24390 -11.07490 -10.82290 -10.71055 -10.64692 -10.33419 -10.22797 -9.97921 -9.68235 -9.51954 -9.38150 -8.46498 -7.73744 -6.62125 -5.74541 -3.15728 2.19646 3.40516 3.46063 3.47369 4.40463 4.53618 4.83917 4.98488 5.21672 5.38639 5.42642 5.48293 5.52570 5.62945 5.78920 5.84859 5.90016 5.98633 6.02150 6.20718 6.25484 6.31309 6.41239 6.42323 6.54462 6.62667 6.69905 6.75511 6.98254 7.30736 7.68707 7.71717 7.76961 7.87182 8.47522 9.25037 9.88651 10.47767 11.34176 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.043859 B = 0.005549 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.251051 B = 5044.729107 C = 5418.793147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.094 4.094 4 C -0.111 4.111 5 C 0.055 3.945 6 N -0.534 5.534 7 C 0.045 3.955 8 C 0.148 3.852 9 N -0.596 5.596 10 C -0.253 4.253 11 H 0.065 0.935 12 C 0.001 3.999 13 N -0.904 5.904 14 Si 0.902 3.098 15 H -0.285 1.285 16 H -0.290 1.290 17 H -0.283 1.283 18 C 0.178 3.822 19 C 0.033 3.967 20 H 0.094 0.906 21 H 0.094 0.906 22 H 0.108 0.892 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.024 0.976 28 H 0.065 0.935 29 H 0.026 0.974 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.025 0.975 33 H 0.254 0.746 34 H 0.026 0.974 35 H 0.087 0.913 36 H 0.023 0.977 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.423 -2.327 -12.707 14.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.164 4.164 3 C -0.132 4.132 4 C -0.149 4.149 5 C -0.074 4.074 6 N -0.259 5.259 7 C -0.085 4.085 8 C 0.022 3.978 9 N -0.319 5.319 10 C -0.382 4.382 11 H 0.083 0.917 12 C -0.197 4.197 13 N -0.548 5.548 14 Si 0.732 3.268 15 H -0.211 1.211 16 H -0.216 1.216 17 H -0.209 1.209 18 C 0.052 3.948 19 C -0.096 4.096 20 H 0.112 0.888 21 H 0.113 0.887 22 H 0.126 0.874 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.105 0.895 36 H 0.041 0.959 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.140 -2.816 -12.532 14.696 hybrid contribution -0.570 1.269 0.782 1.596 sum -7.710 -1.546 -11.751 14.139 Atomic orbital electron populations 1.23817 0.96015 1.01610 1.02567 1.23016 0.95989 0.98744 0.98645 1.20763 0.98216 0.95060 0.99141 1.21543 0.97435 0.98243 0.97703 1.22098 0.94345 0.96148 0.94769 1.61953 1.19006 1.42896 1.02041 1.22600 0.95592 0.90865 0.99420 1.20980 0.92389 0.98657 0.85798 1.44139 1.40767 1.39433 1.07597 1.19161 1.39764 0.94516 0.84795 0.91742 1.25018 1.01646 0.95500 0.97526 1.70027 1.53329 1.11865 1.19618 0.86369 0.78078 0.80572 0.81754 1.21141 1.21597 1.20896 1.20955 0.88241 0.90935 0.94643 1.23017 0.97206 0.98701 0.90688 0.88771 0.88744 0.87402 0.91834 0.91107 0.91055 0.91675 0.95819 0.91625 0.95618 0.92160 0.92699 0.95706 0.93593 0.95578 0.89473 0.95899 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.93 14.32 29.01 0.42 -1.52 16 2 C -0.15 -1.49 9.52 -36.03 -0.34 -1.84 16 3 C -0.09 -1.00 5.66 -27.88 -0.16 -1.16 16 4 C -0.11 -1.45 5.13 -26.73 -0.14 -1.59 16 5 C 0.05 0.81 4.96 -3.83 -0.02 0.79 16 6 N -0.53 -9.91 4.63 -234.04 -1.08 -10.99 16 7 C 0.04 0.84 5.62 -3.71 -0.02 0.82 16 8 C 0.15 3.28 6.69 -3.60 -0.02 3.25 16 9 N -0.60 -15.60 3.03 -171.73 -0.52 -16.12 16 10 C -0.25 -7.13 9.63 -15.06 -0.15 -7.28 16 11 H 0.06 1.78 7.88 -52.49 -0.41 1.36 16 12 C 0.00 0.04 4.93 -17.43 -0.09 -0.04 16 13 N -0.90 -26.70 11.16 55.49 0.62 -26.08 16 14 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 C 0.18 4.45 5.45 -3.37 -0.02 4.43 16 19 C 0.03 0.67 5.48 -3.47 -0.02 0.65 16 20 H 0.09 0.85 7.84 -52.49 -0.41 0.44 16 21 H 0.09 0.78 8.06 -52.49 -0.42 0.36 16 22 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 23 H 0.06 0.67 7.79 -51.92 -0.40 0.26 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.92 6.40 -51.93 -0.33 0.59 16 27 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 28 H 0.07 0.88 7.97 -51.93 -0.41 0.47 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.97 7.99 -51.93 -0.41 0.55 16 31 H 0.05 1.16 7.95 -51.93 -0.41 0.74 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.09 2.39 6.12 -51.93 -0.32 2.07 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 1.16 6.16 -51.93 -0.32 0.84 16 LS Contribution 294.62 15.07 4.44 4.44 Total: -1.00 -29.82 294.62 -8.51 -38.33 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -6.38 Total: -3.04 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -0.55 Total: -3.48 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.98 Total: -53.20 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.82 -8.51 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070592563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.409 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds