Wall clock time and date at job start Mon Mar 30 2020 02:43:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31008 * 1
3 3 C 1.50703 * 119.99856 * 2 1
4 4 C 1.53001 * 109.47085 * 124.99586 * 3 2 1
5 5 C 1.52998 * 109.47037 * 180.02562 * 4 3 2
6 6 N 1.46900 * 109.47355 * 180.02562 * 5 4 3
7 7 C 1.46891 * 111.00538 * 169.99723 * 6 5 4
8 8 C 1.53236 * 109.34490 * 187.25409 * 7 6 5
9 9 N 1.47086 * 108.51747 * 306.17144 * 8 7 6
10 10 C 1.36936 * 120.87786 * 231.18160 * 9 8 7
11 11 H 1.07993 * 120.00304 * 27.13527 * 10 9 8
12 12 C 1.38809 * 119.99955 * 206.85385 * 10 9 8
13 13 N 1.31624 * 119.99882 * 17.16531 * 12 10 9
14 14 Si 1.86805 * 120.00166 * 197.16921 * 12 10 9
15 15 H 1.48494 * 109.47060 * 59.99902 * 14 12 10
16 16 H 1.48503 * 109.46870 * 179.97438 * 14 12 10
17 17 H 1.48497 * 109.46852 * 299.99893 * 14 12 10
18 18 C 1.47083 * 118.23837 * 51.45711 * 9 8 7
19 19 C 1.46900 * 110.99950 * 294.30335 * 6 5 4
20 20 H 1.07995 * 120.00025 * 359.97438 * 1 2 3
21 21 H 1.07993 * 119.99839 * 179.97438 * 1 2 3
22 22 H 1.07995 * 120.00025 * 180.02562 * 2 1 3
23 23 H 1.09010 * 109.47111 * 5.00142 * 3 2 1
24 24 H 1.08995 * 109.47171 * 244.99916 * 3 2 1
25 25 H 1.08998 * 109.46584 * 60.00655 * 4 3 2
26 26 H 1.08995 * 109.47385 * 300.00199 * 4 3 2
27 27 H 1.08998 * 109.47526 * 60.00266 * 5 4 3
28 28 H 1.09005 * 109.46946 * 300.00303 * 5 4 3
29 29 H 1.09002 * 109.49046 * 67.29429 * 7 6 5
30 30 H 1.08998 * 109.52013 * 307.22889 * 7 6 5
31 31 H 1.08998 * 109.63090 * 186.46185 * 8 7 6
32 32 H 1.09001 * 109.62654 * 65.87812 * 8 7 6
33 33 H 0.97001 * 119.99713 * 180.02562 * 13 12 10
34 34 H 1.09000 * 109.62320 * 68.25155 * 18 9 8
35 35 H 1.08997 * 109.62861 * 188.82856 * 18 9 8
36 36 H 1.09000 * 109.49232 * 292.70484 * 19 6 5
37 37 H 1.08999 * 109.49067 * 52.78237 * 19 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3101 0.0000 0.0000
3 6 2.0636 1.3051 0.0000
4 6 3.0350 1.3332 1.1817
5 6 3.7995 2.6585 1.1821
6 7 4.7327 2.6852 2.3162
7 6 5.6485 3.8294 2.2177
8 6 6.7155 3.7213 3.3123
9 7 6.0398 3.5756 4.6106
10 6 6.3630 4.3860 5.6660
11 1 6.7559 5.3757 5.4863
12 6 6.1802 3.9375 6.9668
13 7 6.0260 2.6520 7.2042
14 14 6.1528 5.1582 8.3806
15 1 5.0464 6.1273 8.1764
16 1 5.9439 4.4311 9.6584
17 1 7.4459 5.8866 8.4306
18 6 5.0120 2.5322 4.7469
19 6 4.0081 2.6911 3.5941
20 1 -0.5400 0.9353 0.0004
21 1 -0.5399 -0.9353 -0.0004
22 1 1.8501 -0.9353 -0.0004
23 1 1.3585 2.1317 0.0896
24 1 2.6213 1.4027 -0.9313
25 1 3.7400 0.5067 1.0921
26 1 2.4772 1.2357 2.1130
27 1 3.0943 3.4847 1.2718
28 1 4.3573 2.7564 0.2507
29 1 5.0884 4.7557 2.3460
30 1 6.1295 3.8278 1.2396
31 1 7.3276 4.6232 3.3173
32 1 7.3436 2.8501 3.1265
33 1 5.8979 2.3387 8.1132
34 1 5.4797 1.5489 4.6964
35 1 4.4975 2.6476 5.7009
36 1 3.4708 3.6332 3.7032
37 1 3.2993 1.8633 3.6141
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000070592563.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:43:42
Heat of formation + Delta-G solvation = 39.075043 kcal
Electronic energy + Delta-G solvation = -15591.315888 eV
Core-core repulsion = 13176.471243 eV
Total energy + Delta-G solvation = -2414.844645 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-38.23675 -35.98749 -34.23525 -31.83301 -30.30536 -29.83875 -26.90651 -24.62095
-22.87488 -22.38323 -20.65952 -19.85571 -19.02567 -16.73377 -15.76239 -15.05472
-14.75601 -14.30394 -14.11683 -13.88922 -13.40915 -13.25138 -13.00032 -12.55998
-12.23754 -11.59641 -11.49903 -11.24390 -11.07490 -10.82290 -10.71055 -10.64692
-10.33419 -10.22797 -9.97921 -9.68235 -9.51954 -9.38150 -8.46498 -7.73744
-6.62125 -5.74541 -3.15728 2.19646 3.40516 3.46063 3.47369 4.40463
4.53618 4.83917 4.98488 5.21672 5.38639 5.42642 5.48293 5.52570
5.62945 5.78920 5.84859 5.90016 5.98633 6.02150 6.20718 6.25484
6.31309 6.41239 6.42323 6.54462 6.62667 6.69905 6.75511 6.98254
7.30736 7.68707 7.71717 7.76961 7.87182 8.47522 9.25037 9.88651
10.47767 11.34176
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.043859 B = 0.005549 C = 0.005166
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 638.251051 B = 5044.729107 C = 5418.793147
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.146 4.146
3 C -0.094 4.094
4 C -0.111 4.111
5 C 0.055 3.945
6 N -0.534 5.534
7 C 0.045 3.955
8 C 0.148 3.852
9 N -0.596 5.596
10 C -0.253 4.253
11 H 0.065 0.935
12 C 0.001 3.999
13 N -0.904 5.904
14 Si 0.902 3.098
15 H -0.285 1.285
16 H -0.290 1.290
17 H -0.283 1.283
18 C 0.178 3.822
19 C 0.033 3.967
20 H 0.094 0.906
21 H 0.094 0.906
22 H 0.108 0.892
23 H 0.063 0.937
24 H 0.070 0.930
25 H 0.071 0.929
26 H 0.065 0.935
27 H 0.024 0.976
28 H 0.065 0.935
29 H 0.026 0.974
30 H 0.060 0.940
31 H 0.055 0.945
32 H 0.025 0.975
33 H 0.254 0.746
34 H 0.026 0.974
35 H 0.087 0.913
36 H 0.023 0.977
37 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.423 -2.327 -12.707 14.899
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.240 4.240
2 C -0.164 4.164
3 C -0.132 4.132
4 C -0.149 4.149
5 C -0.074 4.074
6 N -0.259 5.259
7 C -0.085 4.085
8 C 0.022 3.978
9 N -0.319 5.319
10 C -0.382 4.382
11 H 0.083 0.917
12 C -0.197 4.197
13 N -0.548 5.548
14 Si 0.732 3.268
15 H -0.211 1.211
16 H -0.216 1.216
17 H -0.209 1.209
18 C 0.052 3.948
19 C -0.096 4.096
20 H 0.112 0.888
21 H 0.113 0.887
22 H 0.126 0.874
23 H 0.082 0.918
24 H 0.089 0.911
25 H 0.089 0.911
26 H 0.083 0.917
27 H 0.042 0.958
28 H 0.084 0.916
29 H 0.044 0.956
30 H 0.078 0.922
31 H 0.073 0.927
32 H 0.043 0.957
33 H 0.064 0.936
34 H 0.044 0.956
35 H 0.105 0.895
36 H 0.041 0.959
37 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -7.140 -2.816 -12.532 14.696
hybrid contribution -0.570 1.269 0.782 1.596
sum -7.710 -1.546 -11.751 14.139
Atomic orbital electron populations
1.23817 0.96015 1.01610 1.02567 1.23016 0.95989 0.98744 0.98645
1.20763 0.98216 0.95060 0.99141 1.21543 0.97435 0.98243 0.97703
1.22098 0.94345 0.96148 0.94769 1.61953 1.19006 1.42896 1.02041
1.22600 0.95592 0.90865 0.99420 1.20980 0.92389 0.98657 0.85798
1.44139 1.40767 1.39433 1.07597 1.19161 1.39764 0.94516 0.84795
0.91742 1.25018 1.01646 0.95500 0.97526 1.70027 1.53329 1.11865
1.19618 0.86369 0.78078 0.80572 0.81754 1.21141 1.21597 1.20896
1.20955 0.88241 0.90935 0.94643 1.23017 0.97206 0.98701 0.90688
0.88771 0.88744 0.87402 0.91834 0.91107 0.91055 0.91675 0.95819
0.91625 0.95618 0.92160 0.92699 0.95706 0.93593 0.95578 0.89473
0.95899 0.91940
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -1.93 14.32 29.01 0.42 -1.52 16
2 C -0.15 -1.49 9.52 -36.03 -0.34 -1.84 16
3 C -0.09 -1.00 5.66 -27.88 -0.16 -1.16 16
4 C -0.11 -1.45 5.13 -26.73 -0.14 -1.59 16
5 C 0.05 0.81 4.96 -3.83 -0.02 0.79 16
6 N -0.53 -9.91 4.63 -234.04 -1.08 -10.99 16
7 C 0.04 0.84 5.62 -3.71 -0.02 0.82 16
8 C 0.15 3.28 6.69 -3.60 -0.02 3.25 16
9 N -0.60 -15.60 3.03 -171.73 -0.52 -16.12 16
10 C -0.25 -7.13 9.63 -15.06 -0.15 -7.28 16
11 H 0.06 1.78 7.88 -52.49 -0.41 1.36 16
12 C 0.00 0.04 4.93 -17.43 -0.09 -0.04 16
13 N -0.90 -26.70 11.16 55.49 0.62 -26.08 16
14 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16
15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
18 C 0.18 4.45 5.45 -3.37 -0.02 4.43 16
19 C 0.03 0.67 5.48 -3.47 -0.02 0.65 16
20 H 0.09 0.85 7.84 -52.49 -0.41 0.44 16
21 H 0.09 0.78 8.06 -52.49 -0.42 0.36 16
22 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16
23 H 0.06 0.67 7.79 -51.92 -0.40 0.26 16
24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
26 H 0.06 0.92 6.40 -51.93 -0.33 0.59 16
27 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16
28 H 0.07 0.88 7.97 -51.93 -0.41 0.47 16
29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16
30 H 0.06 0.97 7.99 -51.93 -0.41 0.55 16
31 H 0.05 1.16 7.95 -51.93 -0.41 0.74 16
32 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16
33 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16
34 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16
35 H 0.09 2.39 6.12 -51.93 -0.32 2.07 16
36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
37 H 0.06 1.16 6.16 -51.93 -0.32 0.84 16
LS Contribution 294.62 15.07 4.44 4.44
Total: -1.00 -29.82 294.62 -8.51 -38.33
By element:
Atomic # 1 Polarization: 3.34 SS G_CDS: -6.38 Total: -3.04 kcal
Atomic # 6 Polarization: -2.93 SS G_CDS: -0.55 Total: -3.48 kcal
Atomic # 7 Polarization: -52.22 SS G_CDS: -0.98 Total: -53.20 kcal
Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal
Total LS contribution 4.44 Total: 4.44 kcal
Total: -29.82 -8.51 -38.33 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000070592563.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.409 kcal
(2) G-P(sol) polarization free energy of solvation -29.825 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.584 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.075 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds