Wall clock time and date at job start Mon Mar 30 2020 02:43:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31008 * 1
3 3 C 1.50703 * 119.99856 * 2 1
4 4 C 1.53001 * 109.47085 * 124.99586 * 3 2 1
5 5 C 1.52998 * 109.47037 * 180.02562 * 4 3 2
6 6 N 1.46900 * 109.47355 * 180.02562 * 5 4 3
7 7 C 1.46891 * 111.00538 * 169.99723 * 6 5 4
8 8 C 1.53236 * 109.34490 * 187.25409 * 7 6 5
9 9 N 1.47086 * 108.51747 * 306.17144 * 8 7 6
10 10 C 1.36936 * 120.87786 * 231.18160 * 9 8 7
11 11 H 1.07993 * 120.00304 * 27.13527 * 10 9 8
12 12 C 1.38809 * 119.99955 * 206.85385 * 10 9 8
13 13 N 1.31624 * 119.99882 * 17.16531 * 12 10 9
14 14 Si 1.86805 * 120.00166 * 197.16921 * 12 10 9
15 15 H 1.48494 * 109.47060 * 59.99902 * 14 12 10
16 16 H 1.48503 * 109.46870 * 179.97438 * 14 12 10
17 17 H 1.48497 * 109.46852 * 299.99893 * 14 12 10
18 18 C 1.47083 * 118.23837 * 51.45711 * 9 8 7
19 19 C 1.46900 * 110.99950 * 294.30335 * 6 5 4
20 20 H 1.07995 * 120.00025 * 359.97438 * 1 2 3
21 21 H 1.07993 * 119.99839 * 179.97438 * 1 2 3
22 22 H 1.07995 * 120.00025 * 180.02562 * 2 1 3
23 23 H 1.09010 * 109.47111 * 5.00142 * 3 2 1
24 24 H 1.08995 * 109.47171 * 244.99916 * 3 2 1
25 25 H 1.08998 * 109.46584 * 60.00655 * 4 3 2
26 26 H 1.08995 * 109.47385 * 300.00199 * 4 3 2
27 27 H 1.08998 * 109.47526 * 60.00266 * 5 4 3
28 28 H 1.09005 * 109.46946 * 300.00303 * 5 4 3
29 29 H 1.09002 * 109.49046 * 67.29429 * 7 6 5
30 30 H 1.08998 * 109.52013 * 307.22889 * 7 6 5
31 31 H 1.08998 * 109.63090 * 186.46185 * 8 7 6
32 32 H 1.09001 * 109.62654 * 65.87812 * 8 7 6
33 33 H 0.97001 * 119.99713 * 180.02562 * 13 12 10
34 34 H 1.09000 * 109.62320 * 68.25155 * 18 9 8
35 35 H 1.08997 * 109.62861 * 188.82856 * 18 9 8
36 36 H 1.09000 * 109.49232 * 292.70484 * 19 6 5
37 37 H 1.08999 * 109.49067 * 52.78237 * 19 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3101 0.0000 0.0000
3 6 2.0636 1.3051 0.0000
4 6 3.0350 1.3332 1.1817
5 6 3.7995 2.6585 1.1821
6 7 4.7327 2.6852 2.3162
7 6 5.6485 3.8294 2.2177
8 6 6.7155 3.7213 3.3123
9 7 6.0398 3.5756 4.6106
10 6 6.3630 4.3860 5.6660
11 1 6.7559 5.3757 5.4863
12 6 6.1802 3.9375 6.9668
13 7 6.0260 2.6520 7.2042
14 14 6.1528 5.1582 8.3806
15 1 5.0464 6.1273 8.1764
16 1 5.9439 4.4311 9.6584
17 1 7.4459 5.8866 8.4306
18 6 5.0120 2.5322 4.7469
19 6 4.0081 2.6911 3.5941
20 1 -0.5400 0.9353 0.0004
21 1 -0.5399 -0.9353 -0.0004
22 1 1.8501 -0.9353 -0.0004
23 1 1.3585 2.1317 0.0896
24 1 2.6213 1.4027 -0.9313
25 1 3.7400 0.5067 1.0921
26 1 2.4772 1.2357 2.1130
27 1 3.0943 3.4847 1.2718
28 1 4.3573 2.7564 0.2507
29 1 5.0884 4.7557 2.3460
30 1 6.1295 3.8278 1.2396
31 1 7.3276 4.6232 3.3173
32 1 7.3436 2.8501 3.1265
33 1 5.8979 2.3387 8.1132
34 1 5.4797 1.5489 4.6964
35 1 4.4975 2.6476 5.7009
36 1 3.4708 3.6332 3.7032
37 1 3.2993 1.8633 3.6141
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000070592563.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:43:41
Heat of formation + Delta-G solvation = 20.898184 kcal
Electronic energy + Delta-G solvation = -15592.104095 eV
Core-core repulsion = 13176.471243 eV
Total energy + Delta-G solvation = -2415.632853 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.79656 -37.19283 -35.76094 -33.52056 -31.71206 -31.61259 -28.52123 -26.11397
-24.52753 -24.10748 -21.88714 -20.87881 -20.56439 -18.71698 -17.10172 -16.52925
-16.30454 -15.73044 -15.46692 -15.30951 -15.21739 -14.91040 -14.46203 -13.96755
-13.47847 -13.14940 -12.94593 -12.65045 -12.58698 -12.42345 -12.37434 -12.02266
-11.96499 -11.76843 -11.65708 -11.49300 -11.15484 -10.58703 -10.16253 -9.24824
-8.68838 -7.88322 -5.33664 1.44542 1.46043 1.48760 1.55817 2.50424
3.02253 3.26937 3.68030 3.93335 4.04204 4.24759 4.32972 4.37348
4.41468 4.52923 4.60603 4.66531 4.70114 4.71938 4.81398 4.87785
4.97725 5.04261 5.10165 5.19643 5.28167 5.36746 5.43520 5.59842
5.66292 5.79697 5.93998 6.20643 6.32701 6.36990 7.12122 7.82854
8.37749 9.18413
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.043859 B = 0.005549 C = 0.005166
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 638.251051 B = 5044.729107 C = 5418.793147
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.162 4.162
3 C -0.087 4.087
4 C -0.105 4.105
5 C 0.057 3.943
6 N -0.545 5.545
7 C 0.055 3.945
8 C 0.143 3.857
9 N -0.616 5.616
10 C -0.269 4.269
11 H 0.068 0.932
12 C -0.050 4.050
13 N -0.936 5.936
14 Si 0.970 3.030
15 H -0.279 1.279
16 H -0.292 1.292
17 H -0.274 1.274
18 C 0.185 3.815
19 C 0.051 3.949
20 H 0.098 0.902
21 H 0.105 0.895
22 H 0.111 0.889
23 H 0.066 0.934
24 H 0.083 0.917
25 H 0.065 0.935
26 H 0.051 0.949
27 H 0.027 0.973
28 H 0.087 0.913
29 H 0.021 0.979
30 H 0.096 0.904
31 H 0.061 0.939
32 H 0.016 0.984
33 H 0.251 0.749
34 H -0.002 1.002
35 H 0.056 0.944
36 H 0.015 0.985
37 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.133 -1.630 -14.234 16.475
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C -0.180 4.180
3 C -0.124 4.124
4 C -0.143 4.143
5 C -0.070 4.070
6 N -0.270 5.270
7 C -0.074 4.074
8 C 0.017 3.983
9 N -0.340 5.340
10 C -0.399 4.399
11 H 0.085 0.915
12 C -0.246 4.246
13 N -0.582 5.582
14 Si 0.798 3.202
15 H -0.205 1.205
16 H -0.218 1.218
17 H -0.200 1.200
18 C 0.059 3.941
19 C -0.078 4.078
20 H 0.117 0.883
21 H 0.123 0.877
22 H 0.129 0.871
23 H 0.085 0.915
24 H 0.101 0.899
25 H 0.084 0.916
26 H 0.069 0.931
27 H 0.045 0.955
28 H 0.105 0.895
29 H 0.039 0.961
30 H 0.114 0.886
31 H 0.079 0.921
32 H 0.034 0.966
33 H 0.060 0.940
34 H 0.016 0.984
35 H 0.074 0.926
36 H 0.033 0.967
37 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -7.849 -2.110 -14.101 16.276
hybrid contribution -0.324 1.018 1.200 1.607
sum -8.173 -1.091 -12.901 15.311
Atomic orbital electron populations
1.24002 0.95941 1.02425 1.01324 1.23080 0.96361 0.98760 0.99762
1.20686 0.97803 0.95466 0.98460 1.21473 0.97488 0.97124 0.98232
1.22193 0.94015 0.97074 0.93748 1.61912 1.19927 1.42894 1.02244
1.22464 0.94703 0.90695 0.99579 1.21149 0.93472 0.98464 0.85202
1.44433 1.41641 1.39297 1.08612 1.19528 1.39521 0.95038 0.85832
0.91463 1.25820 1.01693 0.97117 0.99950 1.70193 1.54530 1.13696
1.19798 0.85301 0.78357 0.78289 0.78255 1.20477 1.21816 1.19960
1.20713 0.88669 0.89406 0.95273 1.22665 0.95931 0.98954 0.90280
0.88344 0.87652 0.87061 0.91509 0.89880 0.91599 0.93077 0.95484
0.89478 0.96063 0.88620 0.92079 0.96635 0.94007 0.98392 0.92605
0.96682 0.90202
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -3.38 14.32 67.77 0.97 -2.41 16
2 C -0.16 -2.97 9.52 25.64 0.24 -2.73 16
3 C -0.09 -1.62 5.66 29.85 0.17 -1.45 16
4 C -0.11 -2.53 5.13 30.59 0.16 -2.37 16
5 C 0.06 1.52 4.96 86.30 0.43 1.95 16
6 N -0.54 -19.31 4.63 -894.35 -4.14 -23.45 16
7 C 0.05 1.94 5.62 86.38 0.49 2.43 16
8 C 0.14 6.24 6.69 86.35 0.58 6.81 16
9 N -0.62 -32.68 3.03 -697.25 -2.11 -34.79 16
10 C -0.27 -15.36 9.63 84.03 0.81 -14.55 16
11 H 0.07 3.71 7.88 -2.91 -0.02 3.68 16
12 C -0.05 -2.89 4.93 84.86 0.42 -2.47 16
13 N -0.94 -56.83 11.16 21.65 0.24 -56.59 16
14 Si 0.97 45.61 29.59 68.60 2.03 47.64 16
15 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16
16 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16
17 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16
18 C 0.19 9.51 5.45 86.50 0.47 9.99 16
19 C 0.05 2.07 5.48 86.54 0.47 2.54 16
20 H 0.10 1.56 7.84 -2.91 -0.02 1.54 16
21 H 0.11 1.52 8.06 -2.91 -0.02 1.50 16
22 H 0.11 1.94 8.06 -2.91 -0.02 1.92 16
23 H 0.07 1.22 7.79 -2.38 -0.02 1.20 16
24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16
26 H 0.05 1.36 6.40 -2.39 -0.02 1.35 16
27 H 0.03 0.72 8.12 -2.39 -0.02 0.70 16
28 H 0.09 1.99 7.97 -2.38 -0.02 1.97 16
29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16
30 H 0.10 2.73 7.99 -2.39 -0.02 2.72 16
31 H 0.06 2.53 7.95 -2.39 -0.02 2.52 16
32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16
33 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16
34 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16
35 H 0.06 3.18 6.12 -2.39 -0.01 3.17 16
36 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16
37 H 0.08 2.93 6.16 -2.39 -0.01 2.91 16
Total: -1.00 -64.37 294.62 2.22 -62.15
By element:
Atomic # 1 Polarization: 6.30 SS G_CDS: 1.00 Total: 7.30 kcal
Atomic # 6 Polarization: -7.47 SS G_CDS: 5.20 Total: -2.26 kcal
Atomic # 7 Polarization: -108.81 SS G_CDS: -6.01 Total: -114.82 kcal
Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal
Total: -64.37 2.22 -62.15 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000070592563.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.048 kcal
(2) G-P(sol) polarization free energy of solvation -64.374 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.674 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.150 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.898 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds