Wall clock time and date at job start Mon Mar 30 2020 02:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50703 * 119.99856 * 2 1 4 4 C 1.53001 * 109.47085 * 124.99586 * 3 2 1 5 5 C 1.52998 * 109.47037 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.47355 * 180.02562 * 5 4 3 7 7 C 1.46891 * 111.00538 * 169.99723 * 6 5 4 8 8 C 1.53236 * 109.34490 * 187.25409 * 7 6 5 9 9 N 1.47086 * 108.51747 * 306.17144 * 8 7 6 10 10 C 1.36936 * 120.87786 * 231.18160 * 9 8 7 11 11 H 1.07993 * 120.00304 * 27.13527 * 10 9 8 12 12 C 1.38809 * 119.99955 * 206.85385 * 10 9 8 13 13 N 1.31624 * 119.99882 * 17.16531 * 12 10 9 14 14 Si 1.86805 * 120.00166 * 197.16921 * 12 10 9 15 15 H 1.48494 * 109.47060 * 59.99902 * 14 12 10 16 16 H 1.48503 * 109.46870 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46852 * 299.99893 * 14 12 10 18 18 C 1.47083 * 118.23837 * 51.45711 * 9 8 7 19 19 C 1.46900 * 110.99950 * 294.30335 * 6 5 4 20 20 H 1.07995 * 120.00025 * 359.97438 * 1 2 3 21 21 H 1.07993 * 119.99839 * 179.97438 * 1 2 3 22 22 H 1.07995 * 120.00025 * 180.02562 * 2 1 3 23 23 H 1.09010 * 109.47111 * 5.00142 * 3 2 1 24 24 H 1.08995 * 109.47171 * 244.99916 * 3 2 1 25 25 H 1.08998 * 109.46584 * 60.00655 * 4 3 2 26 26 H 1.08995 * 109.47385 * 300.00199 * 4 3 2 27 27 H 1.08998 * 109.47526 * 60.00266 * 5 4 3 28 28 H 1.09005 * 109.46946 * 300.00303 * 5 4 3 29 29 H 1.09002 * 109.49046 * 67.29429 * 7 6 5 30 30 H 1.08998 * 109.52013 * 307.22889 * 7 6 5 31 31 H 1.08998 * 109.63090 * 186.46185 * 8 7 6 32 32 H 1.09001 * 109.62654 * 65.87812 * 8 7 6 33 33 H 0.97001 * 119.99713 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.62320 * 68.25155 * 18 9 8 35 35 H 1.08997 * 109.62861 * 188.82856 * 18 9 8 36 36 H 1.09000 * 109.49232 * 292.70484 * 19 6 5 37 37 H 1.08999 * 109.49067 * 52.78237 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7995 2.6585 1.1821 6 7 4.7327 2.6852 2.3162 7 6 5.6485 3.8294 2.2177 8 6 6.7155 3.7213 3.3123 9 7 6.0398 3.5756 4.6106 10 6 6.3630 4.3860 5.6660 11 1 6.7559 5.3757 5.4863 12 6 6.1802 3.9375 6.9668 13 7 6.0260 2.6520 7.2042 14 14 6.1528 5.1582 8.3806 15 1 5.0464 6.1273 8.1764 16 1 5.9439 4.4311 9.6584 17 1 7.4459 5.8866 8.4306 18 6 5.0120 2.5322 4.7469 19 6 4.0081 2.6911 3.5941 20 1 -0.5400 0.9353 0.0004 21 1 -0.5399 -0.9353 -0.0004 22 1 1.8501 -0.9353 -0.0004 23 1 1.3585 2.1317 0.0896 24 1 2.6213 1.4027 -0.9313 25 1 3.7400 0.5067 1.0921 26 1 2.4772 1.2357 2.1130 27 1 3.0943 3.4847 1.2718 28 1 4.3573 2.7564 0.2507 29 1 5.0884 4.7557 2.3460 30 1 6.1295 3.8278 1.2396 31 1 7.3276 4.6232 3.3173 32 1 7.3436 2.8501 3.1265 33 1 5.8979 2.3387 8.1132 34 1 5.4797 1.5489 4.6964 35 1 4.4975 2.6476 5.7009 36 1 3.4708 3.6332 3.7032 37 1 3.2993 1.8633 3.6141 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070592563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:41 Heat of formation + Delta-G solvation = 20.898184 kcal Electronic energy + Delta-G solvation = -15592.104095 eV Core-core repulsion = 13176.471243 eV Total energy + Delta-G solvation = -2415.632853 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.79656 -37.19283 -35.76094 -33.52056 -31.71206 -31.61259 -28.52123 -26.11397 -24.52753 -24.10748 -21.88714 -20.87881 -20.56439 -18.71698 -17.10172 -16.52925 -16.30454 -15.73044 -15.46692 -15.30951 -15.21739 -14.91040 -14.46203 -13.96755 -13.47847 -13.14940 -12.94593 -12.65045 -12.58698 -12.42345 -12.37434 -12.02266 -11.96499 -11.76843 -11.65708 -11.49300 -11.15484 -10.58703 -10.16253 -9.24824 -8.68838 -7.88322 -5.33664 1.44542 1.46043 1.48760 1.55817 2.50424 3.02253 3.26937 3.68030 3.93335 4.04204 4.24759 4.32972 4.37348 4.41468 4.52923 4.60603 4.66531 4.70114 4.71938 4.81398 4.87785 4.97725 5.04261 5.10165 5.19643 5.28167 5.36746 5.43520 5.59842 5.66292 5.79697 5.93998 6.20643 6.32701 6.36990 7.12122 7.82854 8.37749 9.18413 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.043859 B = 0.005549 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.251051 B = 5044.729107 C = 5418.793147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C -0.087 4.087 4 C -0.105 4.105 5 C 0.057 3.943 6 N -0.545 5.545 7 C 0.055 3.945 8 C 0.143 3.857 9 N -0.616 5.616 10 C -0.269 4.269 11 H 0.068 0.932 12 C -0.050 4.050 13 N -0.936 5.936 14 Si 0.970 3.030 15 H -0.279 1.279 16 H -0.292 1.292 17 H -0.274 1.274 18 C 0.185 3.815 19 C 0.051 3.949 20 H 0.098 0.902 21 H 0.105 0.895 22 H 0.111 0.889 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.027 0.973 28 H 0.087 0.913 29 H 0.021 0.979 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.016 0.984 33 H 0.251 0.749 34 H -0.002 1.002 35 H 0.056 0.944 36 H 0.015 0.985 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.133 -1.630 -14.234 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.180 4.180 3 C -0.124 4.124 4 C -0.143 4.143 5 C -0.070 4.070 6 N -0.270 5.270 7 C -0.074 4.074 8 C 0.017 3.983 9 N -0.340 5.340 10 C -0.399 4.399 11 H 0.085 0.915 12 C -0.246 4.246 13 N -0.582 5.582 14 Si 0.798 3.202 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.200 1.200 18 C 0.059 3.941 19 C -0.078 4.078 20 H 0.117 0.883 21 H 0.123 0.877 22 H 0.129 0.871 23 H 0.085 0.915 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.105 0.895 29 H 0.039 0.961 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.060 0.940 34 H 0.016 0.984 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.849 -2.110 -14.101 16.276 hybrid contribution -0.324 1.018 1.200 1.607 sum -8.173 -1.091 -12.901 15.311 Atomic orbital electron populations 1.24002 0.95941 1.02425 1.01324 1.23080 0.96361 0.98760 0.99762 1.20686 0.97803 0.95466 0.98460 1.21473 0.97488 0.97124 0.98232 1.22193 0.94015 0.97074 0.93748 1.61912 1.19927 1.42894 1.02244 1.22464 0.94703 0.90695 0.99579 1.21149 0.93472 0.98464 0.85202 1.44433 1.41641 1.39297 1.08612 1.19528 1.39521 0.95038 0.85832 0.91463 1.25820 1.01693 0.97117 0.99950 1.70193 1.54530 1.13696 1.19798 0.85301 0.78357 0.78289 0.78255 1.20477 1.21816 1.19960 1.20713 0.88669 0.89406 0.95273 1.22665 0.95931 0.98954 0.90280 0.88344 0.87652 0.87061 0.91509 0.89880 0.91599 0.93077 0.95484 0.89478 0.96063 0.88620 0.92079 0.96635 0.94007 0.98392 0.92605 0.96682 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.38 14.32 67.77 0.97 -2.41 16 2 C -0.16 -2.97 9.52 25.64 0.24 -2.73 16 3 C -0.09 -1.62 5.66 29.85 0.17 -1.45 16 4 C -0.11 -2.53 5.13 30.59 0.16 -2.37 16 5 C 0.06 1.52 4.96 86.30 0.43 1.95 16 6 N -0.54 -19.31 4.63 -894.35 -4.14 -23.45 16 7 C 0.05 1.94 5.62 86.38 0.49 2.43 16 8 C 0.14 6.24 6.69 86.35 0.58 6.81 16 9 N -0.62 -32.68 3.03 -697.25 -2.11 -34.79 16 10 C -0.27 -15.36 9.63 84.03 0.81 -14.55 16 11 H 0.07 3.71 7.88 -2.91 -0.02 3.68 16 12 C -0.05 -2.89 4.93 84.86 0.42 -2.47 16 13 N -0.94 -56.83 11.16 21.65 0.24 -56.59 16 14 Si 0.97 45.61 29.59 68.60 2.03 47.64 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 16 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 18 C 0.19 9.51 5.45 86.50 0.47 9.99 16 19 C 0.05 2.07 5.48 86.54 0.47 2.54 16 20 H 0.10 1.56 7.84 -2.91 -0.02 1.54 16 21 H 0.11 1.52 8.06 -2.91 -0.02 1.50 16 22 H 0.11 1.94 8.06 -2.91 -0.02 1.92 16 23 H 0.07 1.22 7.79 -2.38 -0.02 1.20 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.05 1.36 6.40 -2.39 -0.02 1.35 16 27 H 0.03 0.72 8.12 -2.39 -0.02 0.70 16 28 H 0.09 1.99 7.97 -2.38 -0.02 1.97 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 2.73 7.99 -2.39 -0.02 2.72 16 31 H 0.06 2.53 7.95 -2.39 -0.02 2.52 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 34 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.06 3.18 6.12 -2.39 -0.01 3.17 16 36 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 2.93 6.16 -2.39 -0.01 2.91 16 Total: -1.00 -64.37 294.62 2.22 -62.15 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.00 Total: 7.30 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 5.20 Total: -2.26 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -6.01 Total: -114.82 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -64.37 2.22 -62.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070592563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.048 kcal (2) G-P(sol) polarization free energy of solvation -64.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds