Wall clock time and date at job start Mon Mar 30 2020 02:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99765 * 2 1 4 4 H 1.48493 * 109.47106 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47120 * 299.99723 * 3 2 1 6 6 H 1.48502 * 109.46908 * 59.99725 * 3 2 1 7 7 C 1.37874 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99875 * 166.95933 * 7 2 1 9 9 C 1.50699 * 120.00523 * 346.96319 * 7 2 1 10 10 C 1.53001 * 115.54567 * 324.63508 * 9 7 2 11 11 N 1.46897 * 109.47308 * 291.33317 * 10 9 7 12 12 C 1.46849 * 111.00056 * 51.66039 * 11 10 9 13 13 C 1.53035 * 109.52222 * 185.83931 * 12 11 10 14 14 C 1.53113 * 109.27781 * 300.81697 * 13 12 11 15 15 N 1.46903 * 109.52211 * 177.56141 * 14 13 12 16 16 C 1.53111 * 109.16151 * 57.65747 * 14 13 12 17 17 C 1.46846 * 110.99734 * 175.86621 * 11 10 9 18 18 C 1.52992 * 117.50033 * 110.30847 * 9 7 2 19 19 C 1.52999 * 117.49839 * 178.96948 * 9 7 2 20 20 H 0.96993 * 120.00132 * 5.01732 * 1 2 3 21 21 H 1.08998 * 109.47030 * 51.33303 * 10 9 7 22 22 H 1.08997 * 109.47025 * 171.33334 * 10 9 7 23 23 H 1.09006 * 109.45626 * 305.85323 * 12 11 10 24 24 H 1.08998 * 109.46261 * 65.81796 * 12 11 10 25 25 H 1.09000 * 109.50341 * 180.87473 * 13 12 11 26 26 H 1.09007 * 109.50444 * 60.75872 * 13 12 11 27 27 H 1.09001 * 109.52152 * 297.74972 * 14 13 12 28 28 H 1.00900 * 111.00152 * 60.31318 * 15 14 13 29 29 H 1.00903 * 111.00318 * 184.27116 * 15 14 13 30 30 H 1.09002 * 109.50539 * 182.40517 * 16 14 13 31 31 H 1.09004 * 109.50838 * 62.28453 * 16 14 13 32 32 H 1.08999 * 109.46380 * 294.17697 * 17 11 10 33 33 H 1.09003 * 109.46625 * 54.15170 * 17 11 10 34 34 H 1.09008 * 117.49648 * 215.00763 * 18 9 7 35 35 H 1.09004 * 117.49876 * 0.02562 * 18 9 7 36 36 H 1.08998 * 117.50271 * 359.97334 * 19 9 7 37 37 H 1.09001 * 117.49484 * 144.97367 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0637 -1.2062 -0.2105 9 6 1.2803 -2.4822 0.2955 10 6 0.1569 -2.3857 1.3297 11 7 0.7327 -2.1212 2.6550 12 6 1.6454 -0.9716 2.6124 13 6 2.3352 -0.8157 3.9695 14 6 1.2750 -0.6094 5.0548 15 7 1.9278 -0.5174 6.3676 16 6 0.3090 -1.7973 5.0458 17 6 -0.3222 -1.9248 3.6574 18 6 1.0948 -3.4687 -0.8591 19 6 2.0960 -3.7760 0.2572 20 1 -0.4850 0.8368 -0.0735 21 1 -0.5180 -1.5740 1.0583 22 1 -0.3958 -3.3248 1.3545 23 1 2.3968 -1.1329 1.8394 24 1 1.0802 -0.0674 2.3862 25 1 3.0009 0.0470 3.9424 26 1 2.9118 -1.7141 4.1900 27 1 0.7240 0.3098 4.8557 28 1 2.5707 0.2596 6.3981 29 1 1.2447 -0.4509 7.1072 30 1 -0.4732 -1.6359 5.7876 31 1 0.8536 -2.7112 5.2832 32 1 -0.8782 -1.0162 3.4264 33 1 -0.9999 -2.7785 3.6436 34 1 0.1723 -4.0490 -0.8820 35 1 1.4970 -3.1862 -1.8320 36 1 3.1565 -3.6956 0.0183 37 1 1.8325 -4.5583 0.9691 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854878.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:13 Heat of formation + Delta-G solvation = 15.256935 kcal Electronic energy + Delta-G solvation = -16713.786113 eV Core-core repulsion = 14297.908637 eV Total energy + Delta-G solvation = -2415.877476 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.23738 -38.12170 -35.26320 -34.29251 -31.57761 -30.89741 -27.82022 -26.47511 -23.80664 -22.92976 -22.75920 -20.81671 -20.36580 -18.15917 -16.78161 -16.52062 -16.35115 -15.99449 -15.76774 -15.65047 -14.77040 -14.58946 -14.09683 -13.67208 -13.42111 -13.17875 -12.85143 -12.71198 -12.61925 -12.28025 -12.04860 -11.93609 -11.83315 -11.42584 -11.28190 -11.05918 -10.70872 -10.46194 -10.05921 -9.62063 -8.85104 -7.97768 -6.05223 1.33329 1.40223 1.48256 2.37353 2.97480 3.29960 3.59922 3.81314 3.94173 4.04738 4.31784 4.36533 4.50442 4.61331 4.69452 4.80215 4.83326 4.87095 4.96565 4.98654 5.04023 5.04695 5.20264 5.23906 5.31960 5.38238 5.53564 5.61145 5.62616 5.78820 6.07052 6.24941 6.47318 6.56745 6.64246 6.68853 6.85567 7.42535 8.89277 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.022624 B = 0.012674 C = 0.009624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.320857 B = 2208.745684 C = 2908.723679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.045 3.955 3 Si 0.924 3.076 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.490 4.490 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.085 3.915 11 N -0.525 5.525 12 C 0.051 3.949 13 C -0.108 4.108 14 C 0.094 3.906 15 N -0.843 5.843 16 C -0.094 4.094 17 C 0.055 3.945 18 C -0.204 4.204 19 C -0.180 4.180 20 H 0.259 0.741 21 H 0.070 0.930 22 H 0.033 0.967 23 H 0.111 0.889 24 H 0.001 0.999 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.015 0.985 28 H 0.346 0.654 29 H 0.348 0.652 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.005 0.995 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.641 -0.437 9.060 9.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.156 4.156 3 Si 0.750 3.250 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.527 4.527 8 H 0.072 0.928 9 C 0.027 3.973 10 C -0.042 4.042 11 N -0.249 5.249 12 C -0.077 4.077 13 C -0.146 4.146 14 C -0.017 4.017 15 N -0.374 5.374 16 C -0.132 4.132 17 C -0.075 4.075 18 C -0.243 4.243 19 C -0.218 4.218 20 H 0.069 0.931 21 H 0.088 0.912 22 H 0.052 0.948 23 H 0.129 0.871 24 H 0.019 0.981 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.033 0.967 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.023 0.977 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.049 -1.426 9.101 9.272 hybrid contribution -0.760 2.573 -0.661 2.763 sum 0.289 1.147 8.440 8.523 Atomic orbital electron populations 1.69898 1.06882 1.26733 1.49760 1.25379 0.95171 1.00866 0.94148 0.86031 0.80135 0.81292 0.77566 1.18661 1.20991 1.20575 1.20560 0.94514 0.90757 1.46907 0.92825 1.19064 0.95721 0.88614 0.93915 1.21709 0.96447 0.99028 0.87033 1.62005 1.17536 1.39245 1.06152 1.22734 0.97288 0.90220 0.97445 1.21679 0.97550 1.01276 0.94098 1.21267 0.94441 0.96198 0.89789 1.58704 1.23071 1.51910 1.03674 1.21473 0.97958 0.98553 0.95218 1.22060 0.93663 0.98787 0.92941 1.22941 0.99838 1.07059 0.94426 1.22744 0.95845 1.01582 1.01581 0.93119 0.91231 0.94835 0.87148 0.98124 0.92559 0.91450 0.96732 0.84130 0.83854 0.90378 0.90939 0.97657 0.90877 0.90813 0.91250 0.90823 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.31 10.54 21.45 0.23 -48.08 16 2 C 0.04 2.33 3.00 84.65 0.25 2.58 16 3 Si 0.92 41.52 29.12 68.60 2.00 43.52 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.49 -25.53 5.91 25.60 0.15 -25.38 16 8 H 0.05 2.83 7.85 -2.91 -0.02 2.81 16 9 C 0.03 1.33 1.62 -52.93 -0.09 1.25 16 10 C 0.09 4.04 4.82 86.30 0.42 4.46 16 11 N -0.53 -22.51 4.77 -896.35 -4.27 -26.78 16 12 C 0.05 2.26 3.76 86.32 0.32 2.58 16 13 C -0.11 -3.91 5.67 30.64 0.17 -3.73 16 14 C 0.09 2.93 3.31 44.99 0.15 3.08 16 15 N -0.84 -20.58 9.25 -168.36 -1.56 -22.14 16 16 C -0.09 -2.86 5.64 30.65 0.17 -2.69 16 17 C 0.05 2.01 5.46 86.33 0.47 2.48 16 18 C -0.20 -9.21 9.91 30.62 0.30 -8.91 16 19 C -0.18 -7.80 9.96 30.62 0.30 -7.49 16 20 H 0.26 13.52 8.32 -92.71 -0.77 12.75 16 21 H 0.07 3.71 5.31 -2.39 -0.01 3.70 16 22 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 23 H 0.11 5.41 4.35 -2.38 -0.01 5.40 16 24 H 0.00 0.03 6.47 -2.39 -0.02 0.01 16 25 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 27 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.35 7.52 9.04 -89.69 -0.81 6.71 16 29 H 0.35 6.90 9.00 -89.69 -0.81 6.10 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 32 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.07 2.50 8.12 -2.39 -0.02 2.48 16 34 H 0.07 3.12 8.14 -2.38 -0.02 3.10 16 35 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 36 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -54.89 282.00 -1.53 -56.43 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -0.56 Total: 28.82 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 2.64 Total: -31.77 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -5.60 Total: -97.00 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.00 Total: 43.52 kcal Total: -54.89 -1.53 -56.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854878.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.682 kcal (2) G-P(sol) polarization free energy of solvation -54.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds