Wall clock time and date at job start Mon Mar 30 2020 03:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.50640 * 2 1 4 4 C 1.53047 * 109.49071 * 120.05805 * 2 1 3 5 5 N 1.46956 * 109.36367 * 178.37263 * 4 2 1 6 6 C 1.46961 * 110.88105 * 300.67370 * 5 4 2 7 7 C 1.53054 * 109.36077 * 59.31939 * 6 5 4 8 8 N 1.46951 * 109.36846 * 301.60225 * 7 6 5 9 9 C 1.46894 * 111.00092 * 183.18585 * 8 7 6 10 10 C 1.53003 * 109.47274 * 70.93291 * 9 8 7 11 11 C 1.50702 * 115.54886 * 54.63350 * 10 9 8 12 12 H 1.07997 * 119.99976 * 249.68823 * 11 10 9 13 13 C 1.37877 * 120.00117 * 69.68376 * 11 10 9 14 14 N 1.31521 * 119.99717 * 5.31442 * 13 11 10 15 15 Si 1.86793 * 120.00380 * 185.30856 * 13 11 10 16 16 H 1.48507 * 109.47550 * 180.02562 * 15 13 11 17 17 H 1.48506 * 109.47368 * 300.00501 * 15 13 11 18 18 H 1.48504 * 109.47222 * 60.00358 * 15 13 11 19 19 C 1.52999 * 117.52229 * 200.33472 * 10 9 8 20 20 C 1.52997 * 117.49984 * 268.96701 * 10 9 8 21 21 H 1.09006 * 109.46512 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47198 * 300.04975 * 1 2 3 23 23 H 1.09003 * 109.46937 * 60.05498 * 1 2 3 24 24 H 1.08994 * 109.49417 * 58.40218 * 4 2 1 25 25 H 1.08998 * 109.48979 * 298.33111 * 4 2 1 26 26 H 1.00901 * 110.99921 * 176.81060 * 5 4 2 27 27 H 1.09007 * 109.48727 * 299.35875 * 6 5 4 28 28 H 1.08993 * 109.50908 * 179.29859 * 6 5 4 29 29 H 1.09003 * 109.48750 * 181.62906 * 7 6 5 30 30 H 1.09003 * 109.48422 * 61.57085 * 7 6 5 31 31 H 1.09007 * 109.47577 * 310.93785 * 9 8 7 32 32 H 1.08999 * 109.47236 * 190.93664 * 9 8 7 33 33 H 0.97000 * 119.99938 * 355.04923 * 14 13 11 34 34 H 1.08996 * 117.49678 * 214.97309 * 19 10 9 35 35 H 1.08998 * 117.49571 * 359.97438 * 19 10 9 36 36 H 1.09000 * 117.50186 * 359.97438 * 20 10 9 37 37 H 1.09001 * 117.49895 * 144.99671 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0407 -0.7226 1.2487 5 7 3.5097 -0.7552 1.2264 6 6 4.0000 -1.4490 0.0272 7 6 3.4893 -0.7264 -1.2216 8 7 2.0203 -0.6938 -1.1992 9 6 1.4888 -0.0738 -2.4203 10 6 1.7071 -1.0150 -3.6067 11 6 1.1553 -2.4076 -3.4416 12 1 1.8279 -3.2454 -3.3314 13 6 -0.2082 -2.6122 -3.4312 14 7 -1.0254 -1.6096 -3.6695 15 14 -0.8948 -4.3133 -3.0789 16 1 -2.3784 -4.2680 -3.1264 17 1 -0.3963 -5.2696 -4.0999 18 1 -0.4556 -4.7550 -1.7308 19 6 1.6749 -0.4041 -5.0090 20 6 3.0041 -0.8589 -4.4030 21 1 -0.3632 -1.0278 0.0005 22 1 -0.3633 0.5146 0.8895 23 1 -0.3633 0.5130 -0.8905 24 1 1.6545 -1.7418 1.2626 25 1 1.7023 -0.1930 2.1393 26 1 3.8747 -1.1810 2.0651 27 1 3.6360 -2.4765 0.0272 28 1 5.0900 -1.4493 0.0270 29 1 3.8278 -1.2560 -2.1121 30 1 3.8755 0.2928 -1.2354 31 1 2.0055 0.8682 -2.6041 32 1 0.4223 0.1147 -2.2974 33 1 -0.6730 -0.7128 -3.7813 34 1 1.2546 -1.0094 -5.8121 35 1 1.4978 0.6686 -5.0867 36 1 3.7018 -0.0854 -4.0820 37 1 3.4583 -1.7634 -4.8075 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854910.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:13 Heat of formation + Delta-G solvation = 31.438558 kcal Electronic energy + Delta-G solvation = -16688.284502 eV Core-core repulsion = 14273.108714 eV Total energy + Delta-G solvation = -2415.175788 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.94072 -36.59558 -33.64918 -31.94479 -31.61749 -27.49516 -26.13071 -24.76189 -23.09587 -21.82467 -21.00043 -19.19407 -19.06063 -16.55637 -16.12067 -14.90075 -14.54178 -14.37288 -13.85700 -13.65548 -13.57182 -13.09587 -12.62881 -12.25745 -11.94051 -11.57663 -11.39892 -11.04342 -10.89749 -10.67412 -10.57863 -10.46306 -10.38741 -10.07316 -9.94048 -9.29089 -8.58815 -8.36148 -8.26453 -8.02906 -7.38555 -6.17988 -3.86647 3.49904 3.52979 3.70148 4.45255 4.49422 4.63348 5.16383 5.30282 5.44932 5.51024 5.57630 5.70182 5.76598 5.81672 6.00606 6.03535 6.10031 6.16031 6.28656 6.30925 6.35335 6.43049 6.44563 6.59167 6.63968 6.80911 6.86208 6.93655 7.18114 7.29835 7.34515 7.52457 7.91713 8.01875 8.44530 8.57168 9.03934 9.83035 11.20654 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.023332 B = 0.011595 C = 0.009878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.759590 B = 2414.176558 C = 2833.814985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.083 3.917 3 H 0.033 0.967 4 C 0.066 3.934 5 N -0.694 5.694 6 C 0.060 3.940 7 C 0.062 3.938 8 N -0.503 5.503 9 C 0.092 3.908 10 C 0.039 3.961 11 C -0.536 4.536 12 H 0.046 0.954 13 C 0.029 3.971 14 N -0.913 5.913 15 Si 1.063 2.937 16 H -0.285 1.285 17 H -0.292 1.292 18 H -0.289 1.289 19 C -0.191 4.191 20 C -0.201 4.201 21 H 0.067 0.933 22 H 0.049 0.951 23 H 0.062 0.938 24 H 0.040 0.960 25 H 0.070 0.930 26 H 0.335 0.665 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.022 0.978 31 H -0.001 1.001 32 H 0.082 0.918 33 H 0.270 0.730 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.994 2.192 7.580 9.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.026 4.026 3 H 0.050 0.950 4 C -0.063 4.063 5 N -0.325 5.325 6 C -0.070 4.070 7 C -0.066 4.066 8 N -0.227 5.227 9 C -0.035 4.035 10 C 0.038 3.962 11 C -0.574 4.574 12 H 0.064 0.936 13 C -0.176 4.176 14 N -0.549 5.549 15 Si 0.893 3.107 16 H -0.211 1.211 17 H -0.219 1.219 18 H -0.216 1.216 19 C -0.229 4.229 20 C -0.238 4.238 21 H 0.086 0.914 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.152 0.848 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.041 0.959 31 H 0.017 0.983 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.457 1.455 7.410 8.768 hybrid contribution 1.652 0.839 0.042 1.854 sum 6.109 2.295 7.451 9.905 Atomic orbital electron populations 1.21843 0.94102 1.03157 1.00992 1.21587 0.95292 0.95038 0.90679 0.94956 1.22007 0.87260 0.99598 0.97460 1.60553 1.08976 1.58058 1.04883 1.22009 0.98547 0.96258 0.90179 1.22110 0.88816 0.98162 0.97544 1.61919 1.06598 1.53163 1.01023 1.21824 0.99635 0.92419 0.89638 1.19095 0.94409 0.96072 0.86657 1.21049 0.93403 0.89824 1.53166 0.93552 1.25541 0.93440 1.04791 0.93782 1.70756 1.38045 1.01257 1.44851 0.83629 0.75983 0.74774 0.76332 1.21107 1.21895 1.21608 1.22879 1.00957 0.98033 1.01059 1.22831 0.91154 1.01126 1.08711 0.91370 0.93238 0.91891 0.94130 0.91194 0.84797 0.94107 0.91221 0.89583 0.95943 0.98292 0.90011 0.91857 0.89990 0.91996 0.91863 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.92 37.16 0.33 -2.23 16 2 C 0.08 1.51 2.56 -67.65 -0.17 1.34 16 3 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 4 C 0.07 1.04 6.00 -3.77 -0.02 1.02 16 5 N -0.69 -10.22 6.90 -113.64 -0.78 -11.00 16 6 C 0.06 0.95 6.72 -3.76 -0.03 0.92 16 7 C 0.06 1.16 5.35 -3.77 -0.02 1.14 16 8 N -0.50 -10.45 4.18 -226.49 -0.95 -11.39 16 9 C 0.09 2.09 4.53 -3.83 -0.02 2.07 16 10 C 0.04 0.94 0.61 -155.66 -0.09 0.84 16 11 C -0.54 -14.69 8.49 -34.44 -0.29 -14.98 16 12 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16 13 C 0.03 0.80 5.43 -17.82 -0.10 0.70 16 14 N -0.91 -26.54 13.56 55.43 0.75 -25.79 16 15 Si 1.06 25.35 29.91 -169.99 -5.08 20.27 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 C -0.19 -4.44 9.43 -26.73 -0.25 -4.69 16 20 C -0.20 -4.39 8.33 -26.73 -0.22 -4.61 16 21 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.22 6.06 -51.93 -0.31 0.91 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.34 4.03 8.90 -39.29 -0.35 3.68 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.09 1.71 6.08 -51.93 -0.32 1.39 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.00 -0.02 8.02 -51.93 -0.42 -0.44 16 32 H 0.08 1.97 4.35 -51.93 -0.23 1.75 16 33 H 0.27 7.80 5.81 -40.82 -0.24 7.56 16 34 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 37 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 LS Contribution 286.93 15.07 4.32 4.32 Total: -1.00 -29.06 286.93 -8.76 -37.82 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.14 Total: 4.26 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -0.89 Total: -18.48 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.98 Total: -48.19 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.27 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.06 -8.76 -37.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854910.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.255 kcal (2) G-P(sol) polarization free energy of solvation -29.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds