Wall clock time and date at job start Mon Mar 30 2020 03:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.50640 * 2 1 4 4 C 1.53047 * 109.49071 * 120.05805 * 2 1 3 5 5 N 1.46956 * 109.36367 * 178.37263 * 4 2 1 6 6 C 1.46961 * 110.88105 * 300.67370 * 5 4 2 7 7 C 1.53054 * 109.36077 * 59.31939 * 6 5 4 8 8 N 1.46951 * 109.36846 * 301.60225 * 7 6 5 9 9 C 1.46894 * 111.00092 * 183.18585 * 8 7 6 10 10 C 1.53003 * 109.47274 * 70.93291 * 9 8 7 11 11 C 1.50702 * 115.54886 * 54.63350 * 10 9 8 12 12 H 1.07997 * 119.99976 * 249.68823 * 11 10 9 13 13 C 1.37877 * 120.00117 * 69.68376 * 11 10 9 14 14 N 1.31521 * 119.99717 * 5.31442 * 13 11 10 15 15 Si 1.86793 * 120.00380 * 185.30856 * 13 11 10 16 16 H 1.48507 * 109.47550 * 180.02562 * 15 13 11 17 17 H 1.48506 * 109.47368 * 300.00501 * 15 13 11 18 18 H 1.48504 * 109.47222 * 60.00358 * 15 13 11 19 19 C 1.52999 * 117.52229 * 200.33472 * 10 9 8 20 20 C 1.52997 * 117.49984 * 268.96701 * 10 9 8 21 21 H 1.09006 * 109.46512 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47198 * 300.04975 * 1 2 3 23 23 H 1.09003 * 109.46937 * 60.05498 * 1 2 3 24 24 H 1.08994 * 109.49417 * 58.40218 * 4 2 1 25 25 H 1.08998 * 109.48979 * 298.33111 * 4 2 1 26 26 H 1.00901 * 110.99921 * 176.81060 * 5 4 2 27 27 H 1.09007 * 109.48727 * 299.35875 * 6 5 4 28 28 H 1.08993 * 109.50908 * 179.29859 * 6 5 4 29 29 H 1.09003 * 109.48750 * 181.62906 * 7 6 5 30 30 H 1.09003 * 109.48422 * 61.57085 * 7 6 5 31 31 H 1.09007 * 109.47577 * 310.93785 * 9 8 7 32 32 H 1.08999 * 109.47236 * 190.93664 * 9 8 7 33 33 H 0.97000 * 119.99938 * 355.04923 * 14 13 11 34 34 H 1.08996 * 117.49678 * 214.97309 * 19 10 9 35 35 H 1.08998 * 117.49571 * 359.97438 * 19 10 9 36 36 H 1.09000 * 117.50186 * 359.97438 * 20 10 9 37 37 H 1.09001 * 117.49895 * 144.99671 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0407 -0.7226 1.2487 5 7 3.5097 -0.7552 1.2264 6 6 4.0000 -1.4490 0.0272 7 6 3.4893 -0.7264 -1.2216 8 7 2.0203 -0.6938 -1.1992 9 6 1.4888 -0.0738 -2.4203 10 6 1.7071 -1.0150 -3.6067 11 6 1.1553 -2.4076 -3.4416 12 1 1.8279 -3.2454 -3.3314 13 6 -0.2082 -2.6122 -3.4312 14 7 -1.0254 -1.6096 -3.6695 15 14 -0.8948 -4.3133 -3.0789 16 1 -2.3784 -4.2680 -3.1264 17 1 -0.3963 -5.2696 -4.0999 18 1 -0.4556 -4.7550 -1.7308 19 6 1.6749 -0.4041 -5.0090 20 6 3.0041 -0.8589 -4.4030 21 1 -0.3632 -1.0278 0.0005 22 1 -0.3633 0.5146 0.8895 23 1 -0.3633 0.5130 -0.8905 24 1 1.6545 -1.7418 1.2626 25 1 1.7023 -0.1930 2.1393 26 1 3.8747 -1.1810 2.0651 27 1 3.6360 -2.4765 0.0272 28 1 5.0900 -1.4493 0.0270 29 1 3.8278 -1.2560 -2.1121 30 1 3.8755 0.2928 -1.2354 31 1 2.0055 0.8682 -2.6041 32 1 0.4223 0.1147 -2.2974 33 1 -0.6730 -0.7128 -3.7813 34 1 1.2546 -1.0094 -5.8121 35 1 1.4978 0.6686 -5.0867 36 1 3.7018 -0.0854 -4.0820 37 1 3.4583 -1.7634 -4.8075 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854910.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:12 Heat of formation + Delta-G solvation = 11.690004 kcal Electronic energy + Delta-G solvation = -16689.140864 eV Core-core repulsion = 14273.108714 eV Total energy + Delta-G solvation = -2416.032149 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.45480 -38.32702 -35.07095 -33.93823 -33.15901 -29.01053 -27.61633 -26.84936 -24.62280 -23.40284 -22.64707 -21.12940 -20.50175 -18.49209 -17.46872 -16.43647 -16.15623 -15.75191 -15.62146 -15.47504 -15.08025 -14.67421 -14.25712 -14.08481 -13.67761 -12.98674 -12.80689 -12.74062 -12.64078 -12.51903 -12.22301 -12.03393 -11.95448 -11.92012 -11.48575 -11.07255 -10.62400 -10.27974 -10.04290 -9.49473 -8.96672 -8.37458 -6.05915 1.55611 1.62966 1.80851 2.64549 2.94634 3.26817 3.34717 3.45688 3.90768 4.08043 4.12247 4.22707 4.34271 4.37965 4.41874 4.49188 4.55802 4.60305 4.68826 4.79471 4.81063 4.89128 4.91283 4.97815 5.04366 5.14467 5.17481 5.33811 5.44385 5.52680 5.91083 6.21297 6.32331 6.43220 6.47088 6.56037 6.88059 7.69171 9.01948 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.023332 B = 0.011595 C = 0.009878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.759590 B = 2414.176558 C = 2833.814985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.080 3.920 3 H 0.033 0.967 4 C 0.072 3.928 5 N -0.689 5.689 6 C 0.066 3.934 7 C 0.062 3.938 8 N -0.523 5.523 9 C 0.105 3.895 10 C 0.014 3.986 11 C -0.541 4.541 12 H 0.030 0.970 13 C -0.013 4.013 14 N -0.935 5.935 15 Si 1.102 2.898 16 H -0.288 1.288 17 H -0.279 1.279 18 H -0.280 1.280 19 C -0.194 4.194 20 C -0.176 4.176 21 H 0.042 0.958 22 H 0.083 0.917 23 H 0.040 0.960 24 H 0.026 0.974 25 H 0.099 0.901 26 H 0.355 0.645 27 H 0.026 0.974 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.024 0.976 31 H 0.004 0.996 32 H 0.060 0.940 33 H 0.262 0.738 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.162 2.306 9.057 11.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.051 0.949 4 C -0.058 4.058 5 N -0.322 5.322 6 C -0.064 4.064 7 C -0.066 4.066 8 N -0.247 5.247 9 C -0.023 4.023 10 C 0.013 3.987 11 C -0.579 4.579 12 H 0.049 0.951 13 C -0.212 4.212 14 N -0.573 5.573 15 Si 0.927 3.073 16 H -0.214 1.214 17 H -0.205 1.205 18 H -0.206 1.206 19 C -0.233 4.233 20 C -0.213 4.213 21 H 0.062 0.938 22 H 0.102 0.898 23 H 0.059 0.941 24 H 0.045 0.955 25 H 0.117 0.883 26 H 0.174 0.826 27 H 0.044 0.956 28 H 0.115 0.885 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.022 0.978 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.656 1.568 8.900 10.661 hybrid contribution 1.333 0.830 -0.426 1.627 sum 6.989 2.398 8.474 11.243 Atomic orbital electron populations 1.21768 0.94312 1.01627 1.01597 1.21694 0.95189 0.95211 0.90734 0.94866 1.21959 0.87866 0.98817 0.97128 1.60514 1.08296 1.57993 1.05364 1.21941 1.00042 0.94924 0.89469 1.22114 0.87577 0.98373 0.98530 1.61895 1.07982 1.53744 1.01124 1.21547 0.98543 0.92185 0.90009 1.19160 0.96426 0.95392 0.87731 1.21225 0.93303 0.90932 1.52469 0.95145 1.26613 0.94172 1.07029 0.93430 1.70847 1.38294 1.01294 1.46819 0.83111 0.75303 0.71975 0.76940 1.21351 1.20528 1.20568 1.22810 1.02120 0.98503 0.99825 1.22807 0.90538 1.01439 1.06531 0.93838 0.89776 0.94104 0.95519 0.88278 0.82569 0.95585 0.88451 0.91155 0.95739 0.97815 0.92160 0.92767 0.91972 0.90555 0.89525 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 8.92 71.98 0.64 -4.13 16 2 C 0.08 2.81 2.56 44.92 0.12 2.92 16 3 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 4 C 0.07 2.07 6.00 86.31 0.52 2.59 16 5 N -0.69 -18.13 6.90 -513.43 -3.54 -21.68 16 6 C 0.07 1.94 6.72 86.31 0.58 2.52 16 7 C 0.06 2.24 5.35 86.31 0.46 2.70 16 8 N -0.52 -21.43 4.18 -870.49 -3.63 -25.07 16 9 C 0.11 4.77 4.53 86.31 0.39 5.16 16 10 C 0.01 0.67 0.61 -52.93 -0.03 0.64 16 11 C -0.54 -29.96 8.49 25.60 0.22 -29.74 16 12 H 0.03 1.74 7.82 -2.91 -0.02 1.71 16 13 C -0.01 -0.74 5.43 84.65 0.46 -0.28 16 14 N -0.94 -55.37 13.56 21.45 0.29 -55.08 16 15 Si 1.10 51.37 29.91 68.60 2.05 53.42 16 16 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 C -0.19 -9.03 9.43 30.59 0.29 -8.74 16 20 C -0.18 -7.53 8.33 30.59 0.25 -7.27 16 21 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 22 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.04 1.60 6.06 -2.39 -0.01 1.59 16 24 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.36 7.23 8.90 -89.69 -0.80 6.43 16 27 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.07 2.72 6.08 -2.39 -0.01 2.70 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.00 0.17 8.02 -2.38 -0.02 0.15 16 32 H 0.06 2.98 4.35 -2.39 -0.01 2.97 16 33 H 0.26 15.53 5.81 -92.71 -0.54 14.99 16 34 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.09 3.29 8.08 -2.39 -0.02 3.27 16 37 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -62.13 286.93 -0.47 -62.60 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.47 Total: 19.44 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 3.90 Total: -33.64 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -6.89 Total: -101.82 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.05 Total: 53.42 kcal Total: -62.13 -0.47 -62.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854910.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.287 kcal (2) G-P(sol) polarization free energy of solvation -62.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds