Wall clock time and date at job start Mon Mar 30 2020 03:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.50581 * 2 1 4 4 C 1.53049 * 109.48406 * 120.04995 * 2 1 3 5 5 N 1.46955 * 109.36640 * 178.36897 * 4 2 1 6 6 C 1.46897 * 111.00601 * 176.81291 * 5 4 2 7 7 C 1.53002 * 109.47380 * 176.80914 * 6 5 4 8 8 C 1.50702 * 115.54704 * 53.70453 * 7 6 5 9 9 H 1.07997 * 119.99708 * 215.51210 * 8 7 6 10 10 C 1.37878 * 119.99853 * 35.24518 * 8 7 6 11 11 N 1.31513 * 120.00325 * 357.72284 * 10 8 7 12 12 Si 1.86799 * 119.99646 * 177.72746 * 10 8 7 13 13 H 1.48498 * 109.47590 * 64.99668 * 12 10 8 14 14 H 1.48507 * 109.46833 * 184.99746 * 12 10 8 15 15 H 1.48505 * 109.47397 * 304.99402 * 12 10 8 16 16 C 1.53001 * 117.49930 * 199.37375 * 7 6 5 17 17 C 1.52998 * 117.49790 * 268.03551 * 7 6 5 18 18 C 1.46957 * 110.87903 * 300.68422 * 5 4 2 19 19 C 1.53049 * 109.36801 * 59.31674 * 18 5 4 20 20 N 1.46950 * 109.49285 * 239.94120 * 2 1 3 21 21 H 1.08998 * 109.47592 * 299.95018 * 1 2 3 22 22 H 1.09005 * 109.47062 * 59.94888 * 1 2 3 23 23 H 1.09000 * 109.47726 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.48941 * 58.40400 * 4 2 1 25 25 H 1.08999 * 109.49389 * 298.33780 * 4 2 1 26 26 H 1.08997 * 109.46850 * 56.81338 * 6 5 4 27 27 H 1.08996 * 109.47164 * 296.81106 * 6 5 4 28 28 H 0.96995 * 119.99874 * 175.00237 * 11 10 8 29 29 H 1.08996 * 117.49735 * 215.00237 * 16 7 6 30 30 H 1.09001 * 117.49801 * 0.02977 * 16 7 6 31 31 H 1.08998 * 117.50016 * 359.97438 * 17 7 6 32 32 H 1.09001 * 117.49352 * 144.97524 * 17 7 6 33 33 H 1.09004 * 109.49346 * 179.28463 * 18 5 4 34 34 H 1.08999 * 109.48963 * 299.34777 * 18 5 4 35 35 H 1.08999 * 109.49389 * 181.63170 * 19 18 5 36 36 H 1.08999 * 109.48941 * 61.56550 * 19 18 5 37 37 H 1.00906 * 110.99937 * 56.84747 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0405 -0.7225 1.2489 5 7 3.5095 -0.7553 1.2267 6 6 4.0409 -1.3751 2.4479 7 6 5.5654 -1.4633 2.3533 8 6 6.2738 -0.1681 2.0502 9 1 7.1584 -0.1686 1.4307 10 6 5.7894 1.0181 2.5595 11 7 4.6842 1.0251 3.2723 12 14 6.7028 2.6152 2.2367 13 1 6.6716 2.9185 0.7834 14 1 6.0506 3.7187 2.9867 15 1 8.1124 2.4784 2.6837 16 6 6.2742 -2.4571 3.2757 17 6 6.1643 -2.7477 1.7768 18 6 3.9998 -1.4491 0.0276 19 6 3.4893 -0.7266 -1.2213 20 7 2.0203 -0.6939 -1.1990 21 1 -0.3634 0.5130 0.8904 22 1 -0.3633 0.5147 -0.8896 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6542 -1.7417 1.2628 25 1 1.7020 -0.1929 2.1394 26 1 3.6252 -2.3767 2.5574 27 1 3.7648 -0.7706 3.3119 28 1 4.3825 1.8463 3.6911 29 1 7.2528 -2.1742 3.6633 30 1 5.6543 -3.0485 3.9496 31 1 5.4723 -3.5301 1.4653 32 1 7.0705 -2.6559 1.1780 33 1 5.0899 -1.4492 0.0276 34 1 3.6359 -2.4765 0.0276 35 1 3.8278 -1.2562 -2.1118 36 1 3.8756 0.2926 -1.2352 37 1 1.6553 -0.2681 -2.0378 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:16 Heat of formation + Delta-G solvation = 20.401404 kcal Electronic energy + Delta-G solvation = -16629.569512 eV Core-core repulsion = 14213.915118 eV Total energy + Delta-G solvation = -2415.654395 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.19940 -38.20142 -34.78779 -34.00673 -33.03972 -28.49321 -27.91131 -27.15203 -24.39006 -23.12365 -22.67347 -20.67601 -20.47867 -18.08481 -17.28754 -16.60692 -15.98829 -15.83298 -15.63558 -15.32046 -14.90580 -14.44734 -14.35531 -13.44216 -13.33677 -13.02056 -12.83645 -12.80045 -12.59753 -12.34109 -12.21717 -12.00334 -11.90457 -11.77211 -11.55175 -11.12754 -10.72210 -10.43466 -9.97021 -9.41971 -8.70161 -7.80667 -5.97939 1.45589 1.47198 1.52830 2.51054 3.10253 3.28539 3.41846 3.73895 4.02918 4.20481 4.26987 4.39347 4.47503 4.49367 4.55919 4.72034 4.73545 4.77454 4.87611 4.90667 4.94222 4.97675 5.07738 5.13367 5.18825 5.29771 5.37533 5.45386 5.55027 5.69892 6.04046 6.11095 6.43106 6.54330 6.69255 6.76292 7.02425 7.63787 9.11580 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.023192 B = 0.011506 C = 0.009460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.004553 B = 2432.847095 C = 2959.131099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.089 3.911 3 H 0.024 0.976 4 C 0.070 3.930 5 N -0.511 5.511 6 C 0.122 3.878 7 C 0.036 3.964 8 C -0.494 4.494 9 H 0.041 0.959 10 C 0.051 3.949 11 N -0.879 5.879 12 Si 0.940 3.060 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.278 1.278 16 C -0.209 4.209 17 C -0.196 4.196 18 C 0.066 3.934 19 C 0.067 3.933 20 N -0.682 5.682 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.019 0.981 25 H 0.060 0.940 26 H -0.023 1.023 27 H 0.091 0.909 28 H 0.253 0.747 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.013 0.987 35 H 0.093 0.907 36 H 0.020 0.980 37 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.421 -2.096 -6.469 9.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.021 4.021 3 H 0.042 0.958 4 C -0.059 4.059 5 N -0.234 5.234 6 C -0.006 4.006 7 C 0.035 3.965 8 C -0.532 4.532 9 H 0.059 0.941 10 C -0.152 4.152 11 N -0.516 5.516 12 Si 0.767 3.233 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.204 1.204 16 C -0.248 4.248 17 C -0.233 4.233 18 C -0.063 4.063 19 C -0.063 4.063 20 N -0.315 5.315 21 H 0.083 0.917 22 H 0.090 0.910 23 H 0.081 0.919 24 H 0.037 0.963 25 H 0.079 0.921 26 H -0.005 1.005 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.031 0.969 35 H 0.111 0.889 36 H 0.038 0.962 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.478 -2.080 -6.153 9.174 hybrid contribution 0.705 0.849 0.012 1.104 sum -5.773 -1.231 -6.141 8.518 Atomic orbital electron populations 1.21693 0.92016 1.02621 1.02599 1.21468 0.96177 0.94519 0.89956 0.95775 1.22065 0.88563 0.97738 0.97526 1.61806 1.06220 1.53655 1.01694 1.21528 0.93158 0.92050 0.93823 1.19077 0.91501 0.88444 0.97476 1.20402 1.10070 0.90834 1.31847 0.94090 1.25304 0.94536 1.00352 0.94959 1.69961 1.21100 1.27171 1.33327 0.85937 0.78782 0.80715 0.77847 1.20657 1.21255 1.20389 1.23023 1.02237 1.07258 0.92247 1.22913 1.02740 1.01990 0.95686 1.22076 1.00208 0.93816 0.90189 1.21925 0.87801 0.98619 0.97945 1.60593 1.08146 1.57887 1.04914 0.91695 0.90986 0.91896 0.96263 0.92140 1.00490 0.89125 0.93727 0.90903 0.90835 0.90528 0.90541 0.90828 0.96890 0.88894 0.96202 0.83163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 9.46 71.98 0.68 -2.50 16 2 C 0.09 2.88 3.19 44.92 0.14 3.02 16 3 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 4 C 0.07 2.72 4.90 86.31 0.42 3.14 16 5 N -0.51 -22.91 4.18 -895.74 -3.74 -26.65 16 6 C 0.12 5.90 4.06 86.30 0.35 6.25 16 7 C 0.04 1.76 1.15 -52.93 -0.06 1.69 16 8 C -0.49 -26.73 8.24 25.60 0.21 -26.52 16 9 H 0.04 2.25 7.81 -2.91 -0.02 2.23 16 10 C 0.05 2.72 5.28 84.66 0.45 3.17 16 11 N -0.88 -48.17 10.18 21.45 0.22 -47.96 16 12 Si 0.94 43.66 29.54 68.60 2.03 45.68 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 14 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 16 C -0.21 -9.46 9.96 30.62 0.30 -9.15 16 17 C -0.20 -8.44 8.25 30.62 0.25 -8.19 16 18 C 0.07 2.67 4.85 86.31 0.42 3.09 16 19 C 0.07 2.26 6.72 86.31 0.58 2.84 16 20 N -0.68 -20.50 6.55 -491.17 -3.21 -23.72 16 21 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H -0.02 -1.07 8.08 -2.39 -0.02 -1.09 16 27 H 0.09 4.88 5.96 -2.39 -0.01 4.87 16 28 H 0.25 13.49 8.32 -92.71 -0.77 12.72 16 29 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 30 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 32 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.07 3.28 5.51 -2.39 -0.01 3.26 16 34 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.35 8.46 8.83 -89.69 -0.79 7.67 16 Total: -1.00 -57.25 288.19 -0.72 -57.98 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.24 Total: 17.81 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 3.75 Total: -23.15 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -6.74 Total: -98.32 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -57.25 -0.72 -57.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.378 kcal (2) G-P(sol) polarization free energy of solvation -57.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds