Wall clock time and date at job start Mon Mar 30 2020 03:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.37301 * 2 1 4 4 C 1.49474 * 110.41243 * 237.63888 * 2 1 3 5 5 H 1.09005 * 108.57398 * 317.69229 * 4 2 1 6 6 C 1.49477 * 129.09989 * 92.59550 * 4 2 1 7 7 N 1.49776 * 104.56543 * 148.50677 * 6 4 2 8 8 C 1.50113 * 107.62298 * 353.23782 * 7 6 4 9 9 C 1.51381 * 102.55137 * 334.10153 * 8 7 6 10 10 H 1.08999 * 111.21345 * 288.59656 * 9 8 7 11 11 C 1.51136 * 124.21132 * 150.43226 * 9 8 7 12 12 N 1.49776 * 110.52070 * 122.43926 * 2 1 3 13 13 C 1.46900 * 111.00031 * 3.93446 * 12 2 1 14 14 C 1.52995 * 109.47060 * 190.00262 * 13 12 2 15 15 C 1.50701 * 109.47060 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99800 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99922 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00236 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00236 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46895 * 89.99599 * 19 17 15 21 21 H 1.48502 * 109.47405 * 209.99738 * 19 17 15 22 22 H 1.48502 * 109.46917 * 329.99847 * 19 17 15 23 23 H 1.09005 * 109.47148 * 182.36670 * 1 2 3 24 24 H 1.09000 * 109.46875 * 302.36244 * 1 2 3 25 25 H 1.09000 * 109.47509 * 62.36414 * 1 2 3 26 26 H 1.09000 * 110.41632 * 29.73720 * 6 4 2 27 27 H 1.08997 * 110.51883 * 267.32852 * 6 4 2 28 28 H 1.00892 * 111.00149 * 114.88502 * 7 6 4 29 29 H 1.09002 * 110.82575 * 92.42153 * 8 7 6 30 30 H 1.08996 * 110.82808 * 215.78400 * 8 7 6 31 31 H 1.09000 * 110.65444 * 91.34267 * 11 9 8 32 32 H 1.08994 * 111.03791 * 327.94985 * 11 9 8 33 33 H 1.08999 * 109.47230 * 310.00182 * 13 12 2 34 34 H 1.09004 * 109.46984 * 69.99907 * 13 12 2 35 35 H 1.08999 * 109.47034 * 300.00040 * 14 13 12 36 36 H 1.08999 * 109.47122 * 59.99713 * 14 13 12 37 37 H 0.96996 * 120.00667 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9095 1.0218 0.0000 4 6 2.0514 -0.7498 -1.1833 5 1 1.4563 -1.6541 -1.3110 6 6 2.4294 -0.2341 -2.5344 7 7 3.5352 -1.1375 -2.9866 8 6 3.8850 -2.0379 -1.8376 9 6 3.4657 -1.2169 -0.6368 10 1 4.1381 -0.3732 -0.4816 11 6 2.9940 -1.8061 0.6726 12 7 2.0551 -0.7524 1.1838 13 6 0.9583 -1.3536 1.9543 14 6 1.5019 -1.8958 3.2776 15 6 0.3766 -2.5120 4.0682 16 1 -0.6260 -2.5167 3.6667 17 6 0.6272 -3.0705 5.3035 18 7 -0.3547 -3.6087 5.9934 19 14 2.3615 -3.0629 5.9977 20 1 2.5718 -1.8252 6.7908 21 1 2.5502 -4.2488 6.8714 22 1 3.3411 -3.1088 4.8826 23 1 -0.3634 -1.0268 0.0424 24 1 -0.3633 0.5501 0.8681 25 1 -0.3634 0.4767 -0.9104 26 1 2.7836 0.7943 -2.4634 27 1 1.5829 -0.2975 -3.2181 28 1 3.2564 -1.6739 -3.7944 29 1 3.3190 -2.9681 -1.8878 30 1 4.9561 -2.2387 -1.8147 31 1 3.8317 -1.9434 1.3564 32 1 2.4692 -2.7477 0.5115 33 1 0.1990 -0.5979 2.1558 34 1 0.5163 -2.1690 1.3816 35 1 2.2612 -2.6515 3.0761 36 1 1.9439 -1.0804 3.8502 37 1 -0.1784 -4.0020 6.8623 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085286152.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:34 Heat of formation + Delta-G solvation = 28.395202 kcal Electronic energy + Delta-G solvation = -16022.117383 eV Core-core repulsion = 13606.809625 eV Total energy + Delta-G solvation = -2415.307758 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.64744 -36.56437 -33.27010 -31.74268 -31.28447 -28.61013 -28.12218 -24.81294 -24.44063 -21.89747 -20.46534 -20.35492 -18.81575 -16.81128 -16.44917 -15.79057 -15.09296 -14.56752 -14.28316 -13.91127 -13.48122 -13.28279 -12.73462 -12.58391 -12.48334 -11.96971 -11.82650 -11.56790 -11.39723 -11.11722 -10.98958 -10.85521 -10.64597 -10.10785 -10.01847 -9.70772 -9.66862 -9.18072 -8.72041 -8.52289 -7.87829 -6.03756 -4.01862 3.33655 3.40365 3.45767 3.94160 3.95415 4.20515 4.47286 4.61647 4.96178 5.15921 5.22120 5.31114 5.38828 5.43871 5.54369 5.55366 5.66445 5.74314 5.76769 5.85742 6.00022 6.03473 6.13800 6.22083 6.25469 6.33890 6.44609 6.51594 6.79599 7.10482 7.15810 7.20412 7.49673 7.60127 7.85519 8.53767 9.00074 9.59110 11.09626 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.043032 B = 0.006625 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.516289 B = 4225.107933 C = 4625.805713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.089 3.911 3 H 0.083 0.917 4 C -0.153 4.153 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.682 5.682 8 C 0.059 3.941 9 C -0.122 4.122 10 H 0.094 0.906 11 C 0.060 3.940 12 N -0.521 5.521 13 C 0.061 3.939 14 C -0.007 4.007 15 C -0.521 4.521 16 H 0.070 0.930 17 C 0.068 3.932 18 N -0.905 5.905 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.265 1.265 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.335 0.665 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.026 0.974 35 H 0.013 0.987 36 H 0.020 0.980 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.269 5.244 -16.339 18.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.019 4.019 3 H 0.101 0.899 4 C -0.174 4.174 5 H 0.081 0.919 6 C -0.060 4.060 7 N -0.310 5.310 8 C -0.070 4.070 9 C -0.141 4.141 10 H 0.112 0.888 11 C -0.068 4.068 12 N -0.245 5.245 13 C -0.066 4.066 14 C -0.044 4.044 15 C -0.559 4.559 16 H 0.088 0.912 17 C -0.134 4.134 18 N -0.544 5.544 19 Si 0.709 3.291 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.190 1.190 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.150 0.850 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.032 0.968 36 H 0.038 0.962 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.020 5.961 -15.722 18.221 hybrid contribution -0.489 -1.345 0.001 1.431 sum 6.531 4.616 -15.721 17.639 Atomic orbital electron populations 1.22245 0.95392 1.02558 1.01864 1.21429 0.93910 0.98361 0.88183 0.89876 1.22652 0.97965 1.00973 0.95788 0.91918 1.21620 0.92456 0.98082 0.93878 1.63511 1.39099 1.21587 1.06807 1.22225 1.01146 0.93918 0.89727 1.22733 0.96758 1.00236 0.94398 0.88765 1.22348 0.96862 0.93677 0.93916 1.65466 1.17082 1.23678 1.18300 1.22402 0.92174 0.96900 0.95162 1.19539 0.96954 0.95755 0.92198 1.21087 0.95416 1.37212 1.02210 0.91217 1.24992 0.96948 0.94707 0.96705 1.69914 1.31707 1.39387 1.13384 0.86750 0.85584 0.77581 0.79219 1.20213 1.21518 1.18959 0.92148 0.91403 0.92724 0.90354 0.92429 0.85022 0.93491 0.89908 0.90022 0.93177 0.90808 0.95543 0.96830 0.96207 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 7.86 37.16 0.29 -1.91 16 2 C 0.09 1.27 3.86 -67.84 -0.26 1.01 16 3 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 4 C -0.15 -1.91 2.17 -90.97 -0.20 -2.11 16 5 H 0.06 0.85 7.72 -51.93 -0.40 0.45 16 6 C 0.07 0.73 7.47 -3.95 -0.03 0.70 16 7 N -0.68 -7.16 7.57 -111.80 -0.85 -8.01 16 8 C 0.06 0.65 7.30 -2.84 -0.02 0.63 16 9 C -0.12 -1.58 3.32 -89.24 -0.30 -1.88 16 10 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 11 C 0.06 0.95 5.54 -2.96 -0.02 0.93 16 12 N -0.52 -9.10 5.29 -224.67 -1.19 -10.28 16 13 C 0.06 1.24 3.64 -3.83 -0.01 1.23 16 14 C -0.01 -0.16 4.11 -27.88 -0.11 -0.28 16 15 C -0.52 -15.01 9.66 -34.44 -0.33 -15.35 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 19 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 23 H 0.06 0.89 6.66 -51.93 -0.35 0.54 16 24 H 0.07 0.96 6.97 -51.93 -0.36 0.60 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.34 2.91 8.94 -39.30 -0.35 2.56 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.05 0.83 7.70 -51.93 -0.40 0.43 16 33 H 0.07 1.50 6.10 -51.93 -0.32 1.19 16 34 H 0.03 0.55 7.04 -51.93 -0.37 0.18 16 35 H 0.01 0.33 6.59 -51.93 -0.34 -0.01 16 36 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 282.18 15.07 4.25 4.25 Total: -1.00 -30.54 282.18 -9.01 -39.55 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.25 Total: -0.48 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -1.09 Total: -15.14 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -1.26 Total: -45.67 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.54 -9.01 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085286152.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.943 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds