Wall clock time and date at job start Mon Mar 30 2020 03:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.37301 * 2 1 4 4 C 1.49474 * 110.41243 * 237.63888 * 2 1 3 5 5 H 1.09005 * 108.57398 * 317.69229 * 4 2 1 6 6 C 1.49477 * 129.09989 * 92.59550 * 4 2 1 7 7 N 1.49776 * 104.56543 * 148.50677 * 6 4 2 8 8 C 1.50113 * 107.62298 * 353.23782 * 7 6 4 9 9 C 1.51381 * 102.55137 * 334.10153 * 8 7 6 10 10 H 1.08999 * 111.21345 * 288.59656 * 9 8 7 11 11 C 1.51136 * 124.21132 * 150.43226 * 9 8 7 12 12 N 1.49776 * 110.52070 * 122.43926 * 2 1 3 13 13 C 1.46900 * 111.00031 * 3.93446 * 12 2 1 14 14 C 1.52995 * 109.47060 * 190.00262 * 13 12 2 15 15 C 1.50701 * 109.47060 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99800 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99922 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00236 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00236 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46895 * 89.99599 * 19 17 15 21 21 H 1.48502 * 109.47405 * 209.99738 * 19 17 15 22 22 H 1.48502 * 109.46917 * 329.99847 * 19 17 15 23 23 H 1.09005 * 109.47148 * 182.36670 * 1 2 3 24 24 H 1.09000 * 109.46875 * 302.36244 * 1 2 3 25 25 H 1.09000 * 109.47509 * 62.36414 * 1 2 3 26 26 H 1.09000 * 110.41632 * 29.73720 * 6 4 2 27 27 H 1.08997 * 110.51883 * 267.32852 * 6 4 2 28 28 H 1.00892 * 111.00149 * 114.88502 * 7 6 4 29 29 H 1.09002 * 110.82575 * 92.42153 * 8 7 6 30 30 H 1.08996 * 110.82808 * 215.78400 * 8 7 6 31 31 H 1.09000 * 110.65444 * 91.34267 * 11 9 8 32 32 H 1.08994 * 111.03791 * 327.94985 * 11 9 8 33 33 H 1.08999 * 109.47230 * 310.00182 * 13 12 2 34 34 H 1.09004 * 109.46984 * 69.99907 * 13 12 2 35 35 H 1.08999 * 109.47034 * 300.00040 * 14 13 12 36 36 H 1.08999 * 109.47122 * 59.99713 * 14 13 12 37 37 H 0.96996 * 120.00667 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9095 1.0218 0.0000 4 6 2.0514 -0.7498 -1.1833 5 1 1.4563 -1.6541 -1.3110 6 6 2.4294 -0.2341 -2.5344 7 7 3.5352 -1.1375 -2.9866 8 6 3.8850 -2.0379 -1.8376 9 6 3.4657 -1.2169 -0.6368 10 1 4.1381 -0.3732 -0.4816 11 6 2.9940 -1.8061 0.6726 12 7 2.0551 -0.7524 1.1838 13 6 0.9583 -1.3536 1.9543 14 6 1.5019 -1.8958 3.2776 15 6 0.3766 -2.5120 4.0682 16 1 -0.6260 -2.5167 3.6667 17 6 0.6272 -3.0705 5.3035 18 7 -0.3547 -3.6087 5.9934 19 14 2.3615 -3.0629 5.9977 20 1 2.5718 -1.8252 6.7908 21 1 2.5502 -4.2488 6.8714 22 1 3.3411 -3.1088 4.8826 23 1 -0.3634 -1.0268 0.0424 24 1 -0.3633 0.5501 0.8681 25 1 -0.3634 0.4767 -0.9104 26 1 2.7836 0.7943 -2.4634 27 1 1.5829 -0.2975 -3.2181 28 1 3.2564 -1.6739 -3.7944 29 1 3.3190 -2.9681 -1.8878 30 1 4.9561 -2.2387 -1.8147 31 1 3.8317 -1.9434 1.3564 32 1 2.4692 -2.7477 0.5115 33 1 0.1990 -0.5979 2.1558 34 1 0.5163 -2.1690 1.3816 35 1 2.2612 -2.6515 3.0761 36 1 1.9439 -1.0804 3.8502 37 1 -0.1784 -4.0020 6.8623 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085286152.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:33 Heat of formation + Delta-G solvation = 5.313399 kcal Electronic energy + Delta-G solvation = -16023.118285 eV Core-core repulsion = 13606.809625 eV Total energy + Delta-G solvation = -2416.308660 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.75339 -37.76169 -35.27984 -33.18488 -32.73890 -30.08194 -29.15759 -26.44071 -25.64665 -23.42913 -21.75659 -21.51040 -20.10859 -18.95007 -17.56919 -16.79540 -16.51689 -16.10792 -15.76515 -15.34746 -14.83642 -14.73979 -14.38705 -13.80829 -13.57883 -13.34429 -13.16602 -13.05494 -12.70807 -12.47479 -12.32206 -12.18926 -11.93329 -11.79131 -11.64414 -11.52792 -11.28857 -11.04577 -10.78297 -9.56613 -9.24271 -8.31983 -6.36230 1.35180 1.35789 1.48888 2.34687 2.87221 2.92240 3.03651 3.13845 3.59662 3.94291 4.10348 4.22830 4.30908 4.34776 4.44463 4.46428 4.52982 4.53799 4.67368 4.73149 4.77760 4.86826 4.93285 4.97866 5.08947 5.13658 5.20299 5.31742 5.36472 5.44534 5.59697 5.60831 5.95557 6.10208 6.27072 6.39255 6.71089 7.28900 8.84682 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.043032 B = 0.006625 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.516289 B = 4225.107933 C = 4625.805713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.088 3.912 3 H 0.094 0.906 4 C -0.142 4.142 5 H 0.051 0.949 6 C 0.073 3.927 7 N -0.683 5.683 8 C 0.063 3.937 9 C -0.116 4.116 10 H 0.092 0.908 11 C 0.057 3.943 12 N -0.534 5.534 13 C 0.078 3.922 14 C 0.000 4.000 15 C -0.533 4.533 16 H 0.032 0.968 17 C 0.008 3.992 18 N -0.950 5.950 19 Si 0.951 3.049 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.250 1.250 23 H 0.043 0.957 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.348 0.652 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.017 0.983 35 H 0.014 0.986 36 H 0.018 0.982 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.090 6.050 -17.894 20.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.019 4.019 3 H 0.112 0.888 4 C -0.163 4.163 5 H 0.069 0.931 6 C -0.056 4.056 7 N -0.313 5.313 8 C -0.066 4.066 9 C -0.136 4.136 10 H 0.110 0.890 11 C -0.071 4.071 12 N -0.258 5.258 13 C -0.050 4.050 14 C -0.038 4.038 15 C -0.571 4.571 16 H 0.051 0.949 17 C -0.189 4.189 18 N -0.590 5.590 19 Si 0.774 3.226 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.174 1.174 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.164 0.836 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.035 0.965 35 H 0.033 0.967 36 H 0.036 0.964 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.841 6.775 -17.310 20.584 hybrid contribution -1.139 -1.587 0.454 2.006 sum 7.702 5.188 -16.856 19.245 Atomic orbital electron populations 1.22193 0.94968 1.01620 1.02855 1.21490 0.94289 0.98465 0.87677 0.88809 1.22560 0.97133 1.00231 0.96360 0.93054 1.21638 0.93095 0.98138 0.92706 1.63498 1.39155 1.21694 1.06909 1.22202 1.01774 0.93737 0.88868 1.22619 0.97112 1.00261 0.93579 0.88998 1.22332 0.96206 0.93057 0.95467 1.65367 1.16239 1.23921 1.20304 1.22040 0.92781 0.96447 0.93767 1.19414 0.95356 0.95362 0.93637 1.21400 0.95234 1.37527 1.02938 0.94929 1.25949 1.01663 0.94181 0.97080 1.70056 1.34313 1.40585 1.14083 0.85650 0.80001 0.78092 0.78852 1.19174 1.20731 1.17386 0.93822 0.92457 0.89891 0.89966 0.90598 0.83637 0.93308 0.88994 0.90620 0.94213 0.91243 0.96522 0.96730 0.96394 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 7.86 71.98 0.57 -3.55 16 2 C 0.09 2.37 3.86 43.23 0.17 2.54 16 3 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 4 C -0.14 -3.25 2.17 -11.02 -0.02 -3.27 16 5 H 0.05 1.31 7.72 -2.38 -0.02 1.29 16 6 C 0.07 1.31 7.47 84.61 0.63 1.94 16 7 N -0.68 -12.20 7.57 -507.63 -3.84 -16.05 16 8 C 0.06 1.24 7.30 85.14 0.62 1.86 16 9 C -0.12 -2.80 3.32 -9.90 -0.03 -2.83 16 10 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 11 C 0.06 1.76 5.54 85.07 0.47 2.23 16 12 N -0.53 -18.23 5.29 -864.73 -4.57 -22.81 16 13 C 0.08 3.20 3.64 86.30 0.31 3.51 16 14 C 0.00 0.01 4.11 29.85 0.12 0.13 16 15 C -0.53 -31.51 9.66 25.60 0.25 -31.27 16 16 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 17 C 0.01 0.49 5.47 84.65 0.46 0.96 16 18 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 19 Si 0.95 45.54 27.47 68.60 1.88 47.42 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 23 H 0.04 1.27 6.66 -2.38 -0.02 1.25 16 24 H 0.06 1.60 6.97 -2.39 -0.02 1.58 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.35 4.90 8.94 -89.70 -0.80 4.10 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.04 1.30 7.70 -2.39 -0.02 1.28 16 33 H 0.07 2.89 6.10 -2.39 -0.01 2.87 16 34 H 0.02 0.71 7.04 -2.38 -0.02 0.69 16 35 H 0.01 0.70 6.59 -2.39 -0.02 0.69 16 36 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 37 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -65.91 282.18 -2.51 -68.42 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.18 Total: 10.83 kcal Atomic # 6 Polarization: -31.30 SS G_CDS: 3.55 Total: -27.75 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -8.12 Total: -98.92 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.42 kcal Total: -65.91 -2.51 -68.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085286152.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.732 kcal (2) G-P(sol) polarization free energy of solvation -65.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds